Miyakogusa Predicted Gene

Lj4g3v1879170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1879170.1 tr|A9RWM8|A9RWM8_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,65.08,7e-18,DnaJ/Hsp40 cysteine-rich domain,Heat shock
protein DnaJ, cysteine-rich domain; no description,Heat s,CUFF.49791.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g114180.1 | chaperon protein P13.9, putative | HC | chr4:4...   196   3e-51
Medtr3g107397.1 | chaperon protein P13.9, putative | HC | chr3:4...   112   7e-26

>Medtr4g114180.1 | chaperon protein P13.9, putative | HC |
           chr4:47039776-47042488 | 20130731
          Length = 133

 Score =  196 bits (499), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 107/126 (84%), Gaps = 3/126 (2%)

Query: 1   MAHSLSFAPICSLKSSNR--IVTGNSVARTAFPMKEACQNSKARNFQSLEVKATDDKTP- 57
           MA SLSFAPICSLKSSN    V GNSV R AFPMKE C NSKA NFQSL VKAT+D +  
Sbjct: 1   MAQSLSFAPICSLKSSNTPGAVIGNSVVRKAFPMKEVCLNSKAGNFQSLVVKATEDSSKG 60

Query: 58  STKARSIVCADCDGNGAILCTQCQGNGVNLVDHFNGRYKAGGLCWLCRGKKDILCGSCNG 117
           +TK +SIVCADC GNGA  CTQCQG+GVNL+DHFNGR+KAGGLCWLCRGKKDILCGSCNG
Sbjct: 61  TTKVKSIVCADCTGNGAKECTQCQGSGVNLIDHFNGRFKAGGLCWLCRGKKDILCGSCNG 120

Query: 118 AGFIGG 123
           AGFIGG
Sbjct: 121 AGFIGG 126


>Medtr3g107397.1 | chaperon protein P13.9, putative | HC |
           chr3:49547475-49546235 | 20130731
          Length = 140

 Score =  112 bits (280), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 72/105 (68%)

Query: 19  IVTGNSVARTAFPMKEACQNSKARNFQSLEVKATDDKTPSTKARSIVCADCDGNGAILCT 78
           I +  +  R  F +    Q      +  +  KAT+D   +TK  S++CADCDGNGAI+C+
Sbjct: 29  ITSHTNTNRKHFRVNYGFQGPPTEKYCLVTAKATNDNQQNTKPNSVICADCDGNGAIVCS 88

Query: 79  QCQGNGVNLVDHFNGRYKAGGLCWLCRGKKDILCGSCNGAGFIGG 123
           QC+G+GVN VD F+G +KAG  CWLC G+K++LCG+CNGAGFIGG
Sbjct: 89  QCKGSGVNSVDIFDGLFKAGASCWLCGGRKEMLCGNCNGAGFIGG 133