Miyakogusa Predicted Gene

Lj4g3v1876880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1876880.1 tr|A9T2C9|A9T2C9_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,54.55,0.011,seg,NULL,
NODE_48014_length_844_cov_46.382702.path2.1
         (86 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g114105.3 | transmembrane protein, putative | HC | chr4:46...   117   2e-27
Medtr4g114105.2 | transmembrane protein, putative | HC | chr4:46...   117   2e-27
Medtr4g114105.1 | transmembrane protein, putative | HC | chr4:46...   117   2e-27
Medtr4g114105.4 | transmembrane protein, putative | HC | chr4:46...   117   2e-27

>Medtr4g114105.3 | transmembrane protein, putative | HC |
          chr4:46966742-46969290 | 20130731
          Length = 182

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 58/74 (78%)

Query: 13 MRQRHSQGYGSSGDDLEDDACXXXXXXXXXXXXXXTWIEMLENFLWLASAAFVLYYGDQH 72
          MRQRHSQGY SSGDDLEDDAC              TWIE+LENFLWLASAAF+LY+GDQH
Sbjct: 1  MRQRHSQGYASSGDDLEDDACSRQRAFLPPSPPKKTWIELLENFLWLASAAFILYFGDQH 60

Query: 73 SNMIYLLCYDDRIR 86
          SN IYLLC+DDRIR
Sbjct: 61 SNFIYLLCHDDRIR 74


>Medtr4g114105.2 | transmembrane protein, putative | HC |
          chr4:46966742-46969290 | 20130731
          Length = 182

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 58/74 (78%)

Query: 13 MRQRHSQGYGSSGDDLEDDACXXXXXXXXXXXXXXTWIEMLENFLWLASAAFVLYYGDQH 72
          MRQRHSQGY SSGDDLEDDAC              TWIE+LENFLWLASAAF+LY+GDQH
Sbjct: 1  MRQRHSQGYASSGDDLEDDACSRQRAFLPPSPPKKTWIELLENFLWLASAAFILYFGDQH 60

Query: 73 SNMIYLLCYDDRIR 86
          SN IYLLC+DDRIR
Sbjct: 61 SNFIYLLCHDDRIR 74


>Medtr4g114105.1 | transmembrane protein, putative | HC |
          chr4:46966742-46969290 | 20130731
          Length = 182

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 58/74 (78%)

Query: 13 MRQRHSQGYGSSGDDLEDDACXXXXXXXXXXXXXXTWIEMLENFLWLASAAFVLYYGDQH 72
          MRQRHSQGY SSGDDLEDDAC              TWIE+LENFLWLASAAF+LY+GDQH
Sbjct: 1  MRQRHSQGYASSGDDLEDDACSRQRAFLPPSPPKKTWIELLENFLWLASAAFILYFGDQH 60

Query: 73 SNMIYLLCYDDRIR 86
          SN IYLLC+DDRIR
Sbjct: 61 SNFIYLLCHDDRIR 74


>Medtr4g114105.4 | transmembrane protein, putative | HC |
          chr4:46966742-46969290 | 20130731
          Length = 182

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 58/74 (78%)

Query: 13 MRQRHSQGYGSSGDDLEDDACXXXXXXXXXXXXXXTWIEMLENFLWLASAAFVLYYGDQH 72
          MRQRHSQGY SSGDDLEDDAC              TWIE+LENFLWLASAAF+LY+GDQH
Sbjct: 1  MRQRHSQGYASSGDDLEDDACSRQRAFLPPSPPKKTWIELLENFLWLASAAFILYFGDQH 60

Query: 73 SNMIYLLCYDDRIR 86
          SN IYLLC+DDRIR
Sbjct: 61 SNFIYLLCHDDRIR 74