Miyakogusa Predicted Gene

Lj4g3v1876850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1876850.1 Non Characterized Hit- tr|K4C8J1|K4C8J1_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,58.33,4e-17,CYTOPLASMIC DYNEIN LIGHT CHAIN,NULL; DYNEIN LIGHT
CHAIN,Dynein light chain, type 1/2; Dynein_light,D,gene.g55628.t1.1
         (264 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g114060.2 | dynein light chain type 1 family protein | HC ...   261   5e-70
Medtr4g114060.1 | dynein light chain type 1 family protein | HC ...   261   5e-70
Medtr4g107350.1 | dynein light chain type 1 family protein | HC ...    83   3e-16
Medtr8g104900.1 | dynein light chain type 1 family protein | HC ...    69   6e-12
Medtr1g031880.1 | dynein light chain type 1 family protein | HC ...    58   1e-08

>Medtr4g114060.2 | dynein light chain type 1 family protein | HC |
           chr4:46940344-46937870 | 20130731
          Length = 245

 Score =  261 bits (667), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 162/229 (70%), Gaps = 36/229 (15%)

Query: 1   MYIYKVGIGNGNQRNKELEHAVEKEKK-SKSRSWLQRIRNPTRTLNNVEKSGNRNLEVGG 59
           MYIYK  IG GNQR K+ E  VEKEKK S SRSWLQR+RNPTR+ NN E      L  GG
Sbjct: 13  MYIYK--IGTGNQRKKDSEQGVEKEKKLSSSRSWLQRLRNPTRSYNNKE------LNNGG 64

Query: 60  FVEARKSTSCLEL-GLRGGFVEGRKSVSSMIEASSSPAVK-GIIVEVGRKSVSSMIEASS 117
           FVEAR STSC EL  ++GG+VEGR SVS  IEASSSPA+K GIIV               
Sbjct: 65  FVEARNSTSCFELESIKGGYVEGRNSVSC-IEASSSPAIKRGIIV--------------- 108

Query: 118 SPAVKGIIVEEGRKSVSHIETKYAAAEKARGGFDEGRKSVSQIETFSSVAAYLQVKVLVS 177
                    EEGRKSVS+++    AAE+  G F E RKSVS IET SSV   LQVKVLVS
Sbjct: 109 ---------EEGRKSVSYVDETKLAAEEKVGKFVEARKSVSHIETLSSVIEKLQVKVLVS 159

Query: 178 DMPSFMQVHAFRCARRTHDSQEKFSSKHIAHNIKKEFDKAYGPVWHCIV 226
           DMPSFMQVHAFRCARRT+DS E+FSSKHIAHNIKKEFDKAYGP WHCIV
Sbjct: 160 DMPSFMQVHAFRCARRTYDSLEEFSSKHIAHNIKKEFDKAYGPAWHCIV 208


>Medtr4g114060.1 | dynein light chain type 1 family protein | HC |
           chr4:46940344-46937870 | 20130731
          Length = 245

 Score =  261 bits (667), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 162/229 (70%), Gaps = 36/229 (15%)

Query: 1   MYIYKVGIGNGNQRNKELEHAVEKEKK-SKSRSWLQRIRNPTRTLNNVEKSGNRNLEVGG 59
           MYIYK  IG GNQR K+ E  VEKEKK S SRSWLQR+RNPTR+ NN E      L  GG
Sbjct: 13  MYIYK--IGTGNQRKKDSEQGVEKEKKLSSSRSWLQRLRNPTRSYNNKE------LNNGG 64

Query: 60  FVEARKSTSCLEL-GLRGGFVEGRKSVSSMIEASSSPAVK-GIIVEVGRKSVSSMIEASS 117
           FVEAR STSC EL  ++GG+VEGR SVS  IEASSSPA+K GIIV               
Sbjct: 65  FVEARNSTSCFELESIKGGYVEGRNSVSC-IEASSSPAIKRGIIV--------------- 108

Query: 118 SPAVKGIIVEEGRKSVSHIETKYAAAEKARGGFDEGRKSVSQIETFSSVAAYLQVKVLVS 177
                    EEGRKSVS+++    AAE+  G F E RKSVS IET SSV   LQVKVLVS
Sbjct: 109 ---------EEGRKSVSYVDETKLAAEEKVGKFVEARKSVSHIETLSSVIEKLQVKVLVS 159

Query: 178 DMPSFMQVHAFRCARRTHDSQEKFSSKHIAHNIKKEFDKAYGPVWHCIV 226
           DMPSFMQVHAFRCARRT+DS E+FSSKHIAHNIKKEFDKAYGP WHCIV
Sbjct: 160 DMPSFMQVHAFRCARRTYDSLEEFSSKHIAHNIKKEFDKAYGPAWHCIV 208


>Medtr4g107350.1 | dynein light chain type 1 family protein | HC |
           chr4:44373665-44370969 | 20130731
          Length = 307

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 173 KVLVSDMPSFMQVHAFRCARRTHDSQEKFSSKHIAHNIKKEFDKAYGPVWHCIV 226
           K++ +DMP FMQ+HA  CAR+  DS EKF+SK +A ++KKEFD  YGP WHCIV
Sbjct: 217 KMVSADMPPFMQIHAVDCARKAFDSMEKFTSKTLALSLKKEFDGVYGPAWHCIV 270


>Medtr8g104900.1 | dynein light chain type 1 family protein | HC |
           chr8:44226350-44232514 | 20130731
          Length = 133

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 172 VKVLVSDMPSFMQVHAFRCARRTHDSQ--EKFSSKHIAHNIKKEFDKAYGPVWHCIV 226
           VK+   DMP  +Q HAFRCAR   DS   +K  +K +A  +KKEFD  YGP WHCIV
Sbjct: 39  VKIRACDMPLTLQNHAFRCARHLLDSMPPKKLHTKRLALTLKKEFDSTYGPAWHCIV 95


>Medtr1g031880.1 | dynein light chain type 1 family protein | HC |
           chr1:11198739-11201405 | 20130731
          Length = 146

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 172 VKVLVSDMPSFMQVHAFRCARRTHDSQ--EKFSSKHIAHNIKKEFDKAYGPVWHCIV 226
           + V   DM   +Q HAF+ AR   DS   +K  SKH+A ++KKEFD  YGP WHCIV
Sbjct: 53  IHVKACDMSLPLQKHAFQFARDHLDSMPTKKPDSKHLALSLKKEFDSCYGPAWHCIV 109