Miyakogusa Predicted Gene

Lj4g3v1845710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1845710.1 Non Characterized Hit- tr|D7TBX8|D7TBX8_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,64.06,2e-16,
,CUFF.49766.1
         (104 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g113750.1 | transmembrane protein, putative | HC | chr4:46...   176   6e-45

>Medtr4g113750.1 | transmembrane protein, putative | HC |
           chr4:46812896-46813400 | 20130731
          Length = 107

 Score =  176 bits (445), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 81/104 (77%), Positives = 90/104 (86%)

Query: 1   MNRGLGTWANGAVVILGGVFTLNIASTATLKALHFASEKKRKKVALPCLVCRGKGFYICK 60
           + R   TW  GA V+LGG+ TLN+AST TLK LHFASE KRKK ALPC  CRGKGFYICK
Sbjct: 4   IRRRFPTWITGAFVVLGGIATLNVASTLTLKGLHFASENKRKKTALPCKSCRGKGFYICK 63

Query: 61  LCNGNATIAWSPMYDPIAINPCLCPTCEGNRVQRCLNCLGKGYD 104
           LC+GN+TIAWSPMYDP+AINPC+CPTC+GNRVQRCLNCLGKGYD
Sbjct: 64  LCSGNSTIAWSPMYDPVAINPCVCPTCDGNRVQRCLNCLGKGYD 107