Miyakogusa Predicted Gene

Lj4g3v1833610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1833610.1 Non Characterized Hit- tr|I3SJI8|I3SJI8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.45,0,FAMILY
NOT NAMED,NULL; Rab subfamily of small GTPases,Small GTPase
superfamily, Rab type; Ran (Ras-r,CUFF.49761.1
         (129 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g107707.1 | GTP-binding nuclear Ran-like protein | HC | ch...   243   3e-65
Medtr3g107713.1 | GTP-binding nuclear Ran-like protein | HC | ch...   243   3e-65
Medtr3g107717.1 | GTP-binding nuclear Ran-like protein | HC | ch...   240   2e-64
Medtr4g113620.1 | GTP-binding nuclear protein Ran1 | HC | chr4:4...   223   3e-59
Medtr8g031870.1 | RAB GTPase-like protein A1D | HC | chr8:119315...    48   3e-06
Medtr6g021790.1 | small GTPase family RAB protein | HC | chr6:75...    47   3e-06
Medtr1g097420.1 | RAB GTPase-like protein A1D | HC | chr1:439465...    47   4e-06
Medtr1g097420.2 | RAB GTPase-like protein A1D | HC | chr1:439465...    47   4e-06
Medtr8g031680.1 | RAB GTPase-like protein C2B | LC | chr8:119074...    47   5e-06
Medtr8g092020.1 | RAB GTPase-like protein A1D | HC | chr8:384078...    47   6e-06
Medtr4g088090.1 | RAB GTPase-like protein A1D | HC | chr4:346993...    47   7e-06

>Medtr3g107707.1 | GTP-binding nuclear Ran-like protein | HC |
           chr3:49686750-49683969 | 20130731
          Length = 221

 Score =  243 bits (620), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 115/129 (89%), Positives = 122/129 (94%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLAKKLAGDPGLHFVEMPALAPPDVVLDLTSQQMNEQELLIAANQP 120
           ISAKSNYNFEKPFLYLA+KLAGDP LHFVE PALAPP+V +DL +QQ++E ELL AANQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQVHENELLQAANQP 211

Query: 121 LPDDDDEIF 129
           LPDDDD+ F
Sbjct: 212 LPDDDDDAF 220


>Medtr3g107713.1 | GTP-binding nuclear Ran-like protein | HC |
           chr3:49692352-49689734 | 20130731
          Length = 221

 Score =  243 bits (620), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 115/129 (89%), Positives = 121/129 (93%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLAKKLAGDPGLHFVEMPALAPPDVVLDLTSQQMNEQELLIAANQP 120
           ISAKSNYNFEKPFLYLA+KLAGDP LHFVE PALAPP+V +DL +QQ+ E ELL AANQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQVQENELLQAANQP 211

Query: 121 LPDDDDEIF 129
           LPDDDD+ F
Sbjct: 212 LPDDDDDTF 220


>Medtr3g107717.1 | GTP-binding nuclear Ran-like protein | HC |
           chr3:49697497-49694259 | 20130731
          Length = 221

 Score =  240 bits (613), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/129 (88%), Positives = 120/129 (93%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLAKKLAGDPGLHFVEMPALAPPDVVLDLTSQQMNEQELLIAANQP 120
           ISAKSNYNFEKPFLYLA+KLAGDP LHFVE PALAPP+V +DL +QQ +E EL  AANQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLVAQQQHENELQQAANQP 211

Query: 121 LPDDDDEIF 129
           LPDDDD+ F
Sbjct: 212 LPDDDDDAF 220


>Medtr4g113620.1 | GTP-binding nuclear protein Ran1 | HC |
           chr4:46721599-46724489 | 20130731
          Length = 212

 Score =  223 bits (569), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 114/129 (88%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWH D+ RVCENIPIVLCGNKVDVKNRQ+KAKQV FHRKKNLQYYE
Sbjct: 83  MFDVTARLTYKNVPTWHGDITRVCENIPIVLCGNKVDVKNRQIKAKQVIFHRKKNLQYYE 142

Query: 61  ISAKSNYNFEKPFLYLAKKLAGDPGLHFVEMPALAPPDVVLDLTSQQMNEQELLIAANQP 120
           ISAKSNYNFEKPFLYLAKKLAG+  LHFVEMPALAPP+V  D+ +Q+  EQE+ + A QP
Sbjct: 143 ISAKSNYNFEKPFLYLAKKLAGNMNLHFVEMPALAPPEVAFDIAAQESIEQEICMPAFQP 202

Query: 121 LPDDDDEIF 129
           LPD DDE F
Sbjct: 203 LPDGDDEAF 211


>Medtr8g031870.1 | RAB GTPase-like protein A1D | HC |
           chr8:11931504-11930682 | 20130731
          Length = 189

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQ 57
           ++D+T R T+ ++ TW  D  +    ++ I+L GNK D+  NR V  ++   F ++  L 
Sbjct: 85  VYDITRRETFDHMATWLEDARQHASSDMIIMLVGNKSDLAGNRLVSTEEGEKFAKENGLM 144

Query: 58  YYEISAKSNYNFEKPFLYLAKKL 80
           + E+SAKS  N E+ F+  A+++
Sbjct: 145 FMEVSAKSRENIEEAFVKTAERM 167


>Medtr6g021790.1 | small GTPase family RAB protein | HC |
           chr6:7514453-7508570 | 20130731
          Length = 211

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQ 57
           ++D+T R T+ ++ +W  D  +    N+ I L GNK D+ +R+  +K+    F ++  L 
Sbjct: 85  VYDITRRETFNHLASWLEDARQHANPNMTITLIGNKCDLSHRRAVSKEEGEQFAKENGLL 144

Query: 58  YYEISAKSNYNFEKPFLYLAKKL 80
           + E SAK+  N E+ F+  A K+
Sbjct: 145 FMEASAKTAQNVEEAFIKTAAKI 167


>Medtr1g097420.1 | RAB GTPase-like protein A1D | HC |
           chr1:43946590-43951820 | 20130731
          Length = 207

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 13/108 (12%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FH 51
           +DV    ++ ++ TWH +  +          P +L GNK+D+    +R V  K+      
Sbjct: 88  YDVNVMRSFDSLDTWHEEFLKQANPPDTRAFPFILLGNKIDIDGGNSRVVSEKKANDWCA 147

Query: 52  RKKNLQYYEISAKSNYNFEKPFLYLAKKLAG---DPGLHFVEMPALAP 96
            K N+ Y+E SAK +YN +  FL +AK       +  ++F  +P   P
Sbjct: 148 SKGNIPYFETSAKEDYNVDAAFLCIAKTALANEREQDIYFQGIPEAVP 195


>Medtr1g097420.2 | RAB GTPase-like protein A1D | HC |
           chr1:43946590-43951820 | 20130731
          Length = 234

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 13/108 (12%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FH 51
           +DV    ++ ++ TWH +  +          P +L GNK+D+    +R V  K+      
Sbjct: 115 YDVNVMRSFDSLDTWHEEFLKQANPPDTRAFPFILLGNKIDIDGGNSRVVSEKKANDWCA 174

Query: 52  RKKNLQYYEISAKSNYNFEKPFLYLAKKLAG---DPGLHFVEMPALAP 96
            K N+ Y+E SAK +YN +  FL +AK       +  ++F  +P   P
Sbjct: 175 SKGNIPYFETSAKEDYNVDAAFLCIAKTALANEREQDIYFQGIPEAVP 222


>Medtr8g031680.1 | RAB GTPase-like protein C2B | LC |
           chr8:11907473-11906841 | 20130731
          Length = 210

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQ 57
           ++D+T R T+ ++ TW  D  +    ++ I+L GNK D+  NR V  K+   F ++  L 
Sbjct: 85  VYDITKRETFNHLATWLEDARQHASSDMIIMLIGNKSDLACNRVVSTKEGEKFAKENGLM 144

Query: 58  YYEISAKSNYNFEKPFLYLAKKL 80
           + E+SAKS  N E+ F+  A+ +
Sbjct: 145 FMEVSAKSRENIEEAFVKTAESI 167


>Medtr8g092020.1 | RAB GTPase-like protein A1D | HC |
           chr8:38407885-38409949 | 20130731
          Length = 209

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCEN-----IPIVLCGNKVDV---KNRQVKAKQVT--F 50
           ++DV    T+  +  WH D  +  +       P VL GNKVDV    +R+V  K+     
Sbjct: 91  VYDVNIHKTFDTLNNWHDDFLKQADTGNPDAFPFVLLGNKVDVDGGNSRRVTEKKAREWC 150

Query: 51  HRKKNLQYYEISAKSNYNFEKPFLYLAK 78
             + ++ Y+E SAK  YN +  FL +AK
Sbjct: 151 ASRGSIPYFETSAKEGYNVDDAFLCVAK 178


>Medtr4g088090.1 | RAB GTPase-like protein A1D | HC |
           chr4:34699316-34702141 | 20130731
          Length = 217

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 6/112 (5%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNLQ 57
           ++DVT  +T++NV  W ++L    + NI ++L GNK D+++ R V  +  T F  ++N  
Sbjct: 92  VYDVTRHVTFENVERWLKELRDHTDANIVVMLVGNKADLRHLRAVSTEDATSFSERENTY 151

Query: 58  YYEISAKSNYNFEKPF---LYLAKKLAGDPGLHFVEMPALAPPDVVLDLTSQ 106
           + E SA  + N E  F   L    ++     L   + PA  P    +++ S+
Sbjct: 152 FMETSALESLNVESAFTEVLTQIYRVVSKKALEIGDDPAALPKGQTINVGSR 203