Miyakogusa Predicted Gene

Lj4g3v1813520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1813520.1 Non Characterized Hit- tr|I3T6H9|I3T6H9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RING/U-box,NULL; The RING-variant domain is a C4HC3
zinc-fing,Zinc finger, RING-CH-type; no
descript,NODE_46722_length_892_cov_103.239914.path2.1
         (253 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g113520.1 | zinc finger protein | HC | chr4:46675210-46679...   382   e-106
Medtr3g087920.1 | zinc finger protein | HC | chr3:39850047-39844...   138   4e-33
Medtr2g105850.1 | zinc finger protein | HC | chr2:45699219-45696...   117   1e-26
Medtr2g105850.2 | zinc finger protein | HC | chr2:45699264-45697...    59   4e-09

>Medtr4g113520.1 | zinc finger protein | HC | chr4:46675210-46679677
           | 20130731
          Length = 312

 Score =  382 bits (982), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/258 (73%), Positives = 196/258 (75%), Gaps = 5/258 (1%)

Query: 1   MKGEVQLQPPPIMQNXXXXXXXXXXXXXXXXXXXXA-----EIKDEEDVEAGSLPCCRIC 55
           M GEVQLQPPPI QN                          EIKD+ED+EAGSLPCCRIC
Sbjct: 1   MLGEVQLQPPPIQQNPSDSDPLLAHQDEVEDDDSHGSGNSNEIKDQEDIEAGSLPCCRIC 60

Query: 56  LESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYED 115
           LESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE+YED
Sbjct: 61  LESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVETYED 120

Query: 116 NSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPI 175
           NSWRKIKFRLFVARDVFLVF+AVQTVIAAIGGFAYIMDKDG FRNSFDDGWDRILS+HPI
Sbjct: 121 NSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGNFRNSFDDGWDRILSRHPI 180

Query: 176 PFYYCIXXXXXXXXXXXXXXXXHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACXXX 235
           PFYYCI                HCSSLNSNDPRMAGCQNCCYGWGILDCFPAS+EAC   
Sbjct: 181 PFYYCIGVVAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFAL 240

Query: 236 XXXXXXXXXXXXXXYGFL 253
                         YGFL
Sbjct: 241 VVVFVVIFAILGVAYGFL 258


>Medtr3g087920.1 | zinc finger protein | HC | chr3:39850047-39844555
           | 20130731
          Length = 325

 Score =  138 bits (348), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 89/141 (63%), Gaps = 14/141 (9%)

Query: 43  DVEAG--SLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCT 100
           D+EAG      CRICLE+D     + I+PC CKGT ++VHR CLDHWRSVKEGFAF+HCT
Sbjct: 25  DLEAGPSEQIQCRICLETDGR---DFIAPCKCKGTSKYVHRECLDHWRSVKEGFAFAHCT 81

Query: 101 TCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRN 160
           TCKA +HLRV    D  WR +KFR FV RD+  +F+AVQ +I ++    Y++D       
Sbjct: 82  TCKAPYHLRVHVAADRKWRTLKFRFFVTRDILSIFLAVQLIITSLAYLVYLID------- 134

Query: 161 SFDDGWDRIL--SKHPIPFYY 179
            +   W RIL      + FYY
Sbjct: 135 GYQQNWLRILWGFDSALSFYY 155


>Medtr2g105850.1 | zinc finger protein | HC | chr2:45699219-45696892
           | 20130731
          Length = 246

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 10/129 (7%)

Query: 50  PCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLR 109
           P CRICL+   +   +LI+PC CKGTQ++VHRSCLD+WRS KEGFAFSHCT C+A F +R
Sbjct: 57  PQCRICLDLGGE---DLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRALFIIR 113

Query: 110 VESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRI 169
               +D  W ++KF+  VARD   +F+ VQ V+A +G   Y    D   R  F  G++  
Sbjct: 114 PNVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGD-ELREMF--GYE-- 168

Query: 170 LSKHPIPFY 178
             +HP  FY
Sbjct: 169 --EHPYGFY 175


>Medtr2g105850.2 | zinc finger protein | HC |
          chr2:45699264-45697009 | 20130731
          Length = 197

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%), Gaps = 3/42 (7%)

Query: 50 PCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVK 91
          P CRICL+   +   +LI+PC CKGTQ++VHRSCLD+WRS K
Sbjct: 57 PQCRICLDLGGE---DLIAPCHCKGTQKYVHRSCLDNWRSTK 95