Miyakogusa Predicted Gene
- Lj4g3v1812480.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1812480.1 tr|I3S6W2|I3S6W2_LOTJA Histone H2A OS=Lotus
japonicus PE=2 SV=1,98.5,0,HISTONEH2A,Histone H2A; no
description,Histone-fold; Histone 2A,Histone H2A; seg,NULL;
Histone-fold,,CUFF.49747.1
(133 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g011850.1 | core histone H2A/H2B/H3/H4 | HC | chr1:2226797... 225 8e-60
Medtr1g011750.1 | core histone H2A/H2B/H3/H4 | HC | chr1:2219316... 225 8e-60
Medtr1g071040.1 | core histone H2A/H2B/H3/H4 | HC | chr1:3145290... 209 8e-55
Medtr1g114050.1 | core histone H2A/H2B/H3/H4 | HC | chr1:5144884... 192 7e-50
Medtr2g082510.1 | histone H2A 6 | HC | chr2:34622134-34623149 | ... 129 9e-31
Medtr7g108320.1 | histone H2A 6 | HC | chr7:44072343-44071492 | ... 129 9e-31
Medtr2g082220.1 | histone H2A 6 | HC | chr2:34614712-34616095 | ... 129 1e-30
Medtr7g114060.1 | histone H2A 6 | HC | chr7:47039016-47040106 | ... 127 2e-30
Medtr7g114040.1 | histone H2A 6 | HC | chr7:47032712-47033690 | ... 127 2e-30
Medtr4g048490.1 | core histone H2A/H2B/H3/H4 | HC | chr4:1720005... 125 1e-29
Medtr7g093910.1 | core histone H2A/H2B/H3/H4 | HC | chr7:3736816... 124 2e-29
Medtr2g096610.1 | core histone H2A/H2B/H3/H4 | HC | chr2:4125742... 118 1e-27
Medtr7g113160.1 | histone H2A 6 | HC | chr7:46584129-46584929 | ... 118 1e-27
Medtr8g086640.1 | core histone H2A/H2B/H3/H4 | HC | chr8:3596133... 118 1e-27
Medtr4g071150.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2682761... 118 2e-27
Medtr4g064967.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2429793... 117 2e-27
Medtr4g064005.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2387506... 117 3e-27
Medtr2g096570.1 | core histone H2A/H2B/H3/H4 | HC | chr2:4124501... 117 3e-27
Medtr4g063280.1 | histone H2A 6 | HC | chr4:23448360-23447582 | ... 117 3e-27
Medtr4g063410.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2342389... 115 1e-26
Medtr7g027610.1 | core histone H2A/H2B/H3/H4 | HC | chr7:9280293... 105 2e-23
Medtr7g114050.1 | core histone H2A/H2B/H3/H4 | HC | chr7:4703594... 100 6e-22
Medtr0653s0030.1 | core histone H2A/H2B/H3/H4 | LC | scaffold065... 87 4e-18
Medtr4g063300.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2344685... 79 1e-15
Medtr6g005150.1 | core histone H2A/H2B/H3/H4 | HC | chr6:630102-... 79 1e-15
Medtr7g427690.1 | homeobox leucine zipper HDG11-like protein | H... 62 1e-10
Medtr7g010440.1 | histone H2A, putative | LC | chr7:2581222-2576... 54 5e-08
Medtr1g069770.1 | core histone H2A/H2B/H3/H4 | LC | chr1:3043622... 53 7e-08
Medtr4g005910.1 | histone H2A | HC | chr4:420323-420040 | 20130731 52 2e-07
>Medtr1g011850.1 | core histone H2A/H2B/H3/H4 | HC |
chr1:2226797-2223509 | 20130731
Length = 134
Score = 225 bits (574), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/134 (88%), Positives = 118/134 (88%), Gaps = 1/134 (0%)
Query: 1 MSGKGAKGLITSANNXX-XXXXXXXPTSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATA 59
MSGKGAKGL T PTSRSSRAGLQFPVGRIHRLLKSRT AHGRVGATA
Sbjct: 1 MSGKGAKGLTTGKTPANLKDKDKKKPTSRSSRAGLQFPVGRIHRLLKSRTMAHGRVGATA 60
Query: 60 AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 119
AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61 AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
Query: 120 PHIHKSLINKSSKE 133
PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134
>Medtr1g011750.1 | core histone H2A/H2B/H3/H4 | HC |
chr1:2219316-2215483 | 20130731
Length = 134
Score = 225 bits (574), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/134 (88%), Positives = 118/134 (88%), Gaps = 1/134 (0%)
Query: 1 MSGKGAKGLITSANNXX-XXXXXXXPTSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATA 59
MSGKGAKGL T PTSRSSRAGLQFPVGRIHRLLKSRT AHGRVGATA
Sbjct: 1 MSGKGAKGLTTGKTPANLKDKDKKKPTSRSSRAGLQFPVGRIHRLLKSRTMAHGRVGATA 60
Query: 60 AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 119
AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61 AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
Query: 120 PHIHKSLINKSSKE 133
PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134
>Medtr1g071040.1 | core histone H2A/H2B/H3/H4 | HC |
chr1:31452900-31454806 | 20130731
Length = 134
Score = 209 bits (531), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 109/136 (80%), Positives = 117/136 (86%), Gaps = 5/136 (3%)
Query: 1 MSGKGAKGLI---TSANNXXXXXXXXXPTSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGA 57
M+GKG KGL+ T+A N PTSRSSRAG+QFPVGRIHR LK R A+GRVGA
Sbjct: 1 MAGKGGKGLVAAKTTAANKDKDKKK--PTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGA 58
Query: 58 TAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 117
TAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 59 TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 118
Query: 118 VIPHIHKSLINKSSKE 133
VIPHIHKSLINK++KE
Sbjct: 119 VIPHIHKSLINKTAKE 134
>Medtr1g114050.1 | core histone H2A/H2B/H3/H4 | HC |
chr1:51448842-51449237 | 20130731
Length = 131
Score = 192 bits (488), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 109/133 (81%), Gaps = 2/133 (1%)
Query: 1 MSGKGAKGLITSANNXXXXXXXXXPTSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAA 60
M+GKG T +N P SRSSRAG+QFPVGRIHR LK R A+GRVGATAA
Sbjct: 1 MAGKGLVAAKTIGDNKDRDKKE--PISRSSRAGIQFPVGRIHRQLKHRVQANGRVGATAA 58
Query: 61 VYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIP 120
VY A+ILEYLT EVLELAGNAS+DL VKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIP
Sbjct: 59 VYLASILEYLTTEVLELAGNASRDLNVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIP 118
Query: 121 HIHKSLINKSSKE 133
+IHKSLINK++KE
Sbjct: 119 NIHKSLINKTAKE 131
>Medtr2g082510.1 | histone H2A 6 | HC | chr2:34622134-34623149 |
20130731
Length = 132
Score = 129 bits (323), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
TSRSS+AGLQFPVGRI R LK+ A RVGA A VY AA+LEYL AEVLELAGNA++D
Sbjct: 17 TSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 131
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ K +
Sbjct: 76 KKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
>Medtr7g108320.1 | histone H2A 6 | HC | chr7:44072343-44071492 |
20130731
Length = 142
Score = 129 bits (323), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 86/125 (68%), Gaps = 2/125 (1%)
Query: 6 AKGLITSANNXXXXXXXXXPTSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAA 65
+KG T+ SRSS+AGLQFPVGRI R LK+ A RVGA A VY +A
Sbjct: 3 SKGATTTTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSA 61
Query: 66 ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHK 124
+LEYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH+
Sbjct: 62 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQ 121
Query: 125 SLINK 129
+L+ K
Sbjct: 122 TLLPK 126
>Medtr2g082220.1 | histone H2A 6 | HC | chr2:34614712-34616095 |
20130731
Length = 131
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
TSRSS+AGLQFPVGRI R LK+ A RVGA A VY AA+LEYL AEVLELAGNA++D
Sbjct: 17 TSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 131
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ K +
Sbjct: 76 KKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
>Medtr7g114060.1 | histone H2A 6 | HC | chr7:47039016-47040106 |
20130731
Length = 139
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
SRSS+AGLQFPVGRI R LK+ A RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 20 VSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDN 78
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 129
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 79 KKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTLLPK 123
>Medtr7g114040.1 | histone H2A 6 | HC | chr7:47032712-47033690 |
20130731
Length = 139
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
SRSS+AGLQFPVGRI R LK+ A RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 20 VSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDN 78
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 129
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 79 KKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTLLPK 123
>Medtr4g048490.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:17200059-17200463 | 20130731
Length = 105
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 85/136 (62%), Gaps = 34/136 (25%)
Query: 1 MSGKGAKGLI---TSANNXXXXXXXXXPTSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGA 57
M+G+G KGL+ T A N TSRSSRAG+QF V
Sbjct: 1 MAGEGGKGLVDAKTIAANKDKDKKKS--TSRSSRAGIQFHV------------------- 39
Query: 58 TAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 117
EYLT EVLE A NA+ DLK+KRITPRHLQLAIRGDEELDTL+KGTIAGGG
Sbjct: 40 ----------EYLTTEVLEPAENATNDLKLKRITPRHLQLAIRGDEELDTLVKGTIAGGG 89
Query: 118 VIPHIHKSLINKSSKE 133
VIP+IHKSLINK+ KE
Sbjct: 90 VIPNIHKSLINKTIKE 105
>Medtr7g093910.1 | core histone H2A/H2B/H3/H4 | HC |
chr7:37368164-37367294 | 20130731
Length = 142
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
Query: 27 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 86
SRSS+AGLQFPVGRI R LK+ + RVG+ + VY +A+LEYL AEVLELAGNA++D K
Sbjct: 24 SRSSKAGLQFPVGRIARFLKAGRYSQ-RVGSGSPVYLSAVLEYLCAEVLELAGNAARDNK 82
Query: 87 VKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINK 129
RI PRHLQLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 83 KTRIVPRHLQLAVRNDEELSKLLGHVTIANGGVLPNIHQTLLPK 126
>Medtr2g096610.1 | core histone H2A/H2B/H3/H4 | HC |
chr2:41257422-41258284 | 20130731
Length = 148
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 80/108 (74%), Gaps = 2/108 (1%)
Query: 27 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 86
+RS+RAGLQFPVGRI R LK A RVG A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 24 TRSTRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 82
Query: 87 VKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 133
RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K +++
Sbjct: 83 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEK 130
>Medtr7g113160.1 | histone H2A 6 | HC | chr7:46584129-46584929 |
20130731
Length = 144
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
S+SS+AGLQFPVGRI R +K + RVG A +Y AA+LEYL AEVLELAGNA++D
Sbjct: 27 VSKSSKAGLQFPVGRIARFMKKGRYSQ-RVGTGAPIYLAAVLEYLAAEVLELAGNAARDN 85
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 131
K RI PRH+ LA+R D+EL L++G TIA GGV+P+I+ L+ K +
Sbjct: 86 KKNRINPRHVCLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKT 132
>Medtr8g086640.1 | core histone H2A/H2B/H3/H4 | HC |
chr8:35961338-35962088 | 20130731
Length = 150
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 79/109 (72%), Gaps = 2/109 (1%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
+RS RAGLQFPVGRI R LK A RVG A VY AA+LEYL AEVLELAGNA++D
Sbjct: 25 VTRSIRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDN 83
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 133
K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K S++
Sbjct: 84 KKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEK 132
>Medtr4g071150.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:26827610-26828386 | 20130731
Length = 152
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 27 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 86
+RS RAGLQFPVGRI R LK A RVG A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 26 TRSIRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 84
Query: 87 VKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 132
RI PRHL LA+R DEEL L+ G TIA GGV+P+I+ L+ K ++
Sbjct: 85 KNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKTE 131
>Medtr4g064967.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:24297934-24298514 | 20130731
Length = 148
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 79/109 (72%), Gaps = 2/109 (1%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
+RS RAGLQFPVGRI R LK A RVG A VY AA+LEYL AEVLELAGNA++D
Sbjct: 25 VTRSIRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDN 83
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 133
K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K +++
Sbjct: 84 KKNRIIPRHVLLAVRNDEELGKLLNGVTIAHGGVLPNINPILLPKKNEK 132
>Medtr4g064005.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:23875068-23875767 | 20130731
Length = 148
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 79/108 (73%), Gaps = 2/108 (1%)
Query: 27 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 86
+RS RAGLQFPVGRI R LK A RVG A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 26 TRSIRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 84
Query: 87 VKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 133
RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K +++
Sbjct: 85 KNRIIPRHVLLAVRNDEELGKLLNGVTIAHGGVLPNINPILLPKKNEK 132
>Medtr2g096570.1 | core histone H2A/H2B/H3/H4 | HC |
chr2:41245010-41243919 | 20130731
Length = 153
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 78/108 (72%), Gaps = 2/108 (1%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
+RS RAGLQFPVGRI R LK A RVG A VY AA+LEYL AEVLELAGNA++D
Sbjct: 24 VTRSIRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDN 82
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 132
K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K ++
Sbjct: 83 KKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTE 130
>Medtr4g063280.1 | histone H2A 6 | HC | chr4:23448360-23447582 |
20130731
Length = 145
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 78/109 (71%), Gaps = 2/109 (1%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
+RS RAGLQFPVGRI R LK A RVG A VY AA+LEYL AEVLELAGNA++D
Sbjct: 19 VTRSIRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDN 77
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 133
K RI PRH+ LA+R DEEL L+ G TIA GGV P+I+ L+ K +++
Sbjct: 78 KKNRIIPRHVLLAVRNDEELGKLLNGVTIAHGGVFPNINPILLPKKTEK 126
>Medtr4g063410.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:23423893-23423177 | 20130731
Length = 148
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 76/105 (72%), Gaps = 2/105 (1%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
+RS RAGLQFPVGRI R LK A RVG A VY AA+LEYL AEVLELAGNA++D
Sbjct: 25 VTRSIRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDN 83
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 129
K RI PRH+ LA+R DE+L L+ G TIA GGV+P+I+ L+ K
Sbjct: 84 KKNRIIPRHVLLAVRNDEDLGKLLNGVTIAHGGVLPNINPILLPK 128
>Medtr7g027610.1 | core histone H2A/H2B/H3/H4 | HC |
chr7:9280293-9279572 | 20130731
Length = 111
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 68/108 (62%), Gaps = 24/108 (22%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
TSR SRA +Q VGRIH+ LK R + RVGA AVY A+ILEYLTAEVLELAGNA
Sbjct: 15 TSRYSRARIQIHVGRIHKQLKQRVQYNRRVGAITAVYLASILEYLTAEVLELAGNAG--- 71
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 133
TLIKGTI GGGVI +IHKSLINK++KE
Sbjct: 72 ---------------------TLIKGTIVGGGVISNIHKSLINKTAKE 98
>Medtr7g114050.1 | core histone H2A/H2B/H3/H4 | HC |
chr7:47035942-47035278 | 20130731
Length = 130
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 73/107 (68%), Gaps = 13/107 (12%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
SRSS+AGLQFPVGRI R LK+ A RVGA A VY +A+LEYL AEV GNA++D
Sbjct: 22 VSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEV----GNAARDN 76
Query: 86 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 131
K +QLA+R DEEL L+ TIA GGV+P+IH++L+ K S
Sbjct: 77 K-------KIQLAVRNDEELSKLLGAVTIANGGVLPNIHQTLLPKKS 116
>Medtr0653s0030.1 | core histone H2A/H2B/H3/H4 | LC |
scaffold0653:5256-6768 | 20130731
Length = 155
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 45/51 (88%)
Query: 61 VYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 111
+ A EYLTAEVLELAGN++KDLKVKRITPR LQLAIRGDEELDTLIKG
Sbjct: 47 FHVAQTAEYLTAEVLELAGNSNKDLKVKRITPRQLQLAIRGDEELDTLIKG 97
>Medtr4g063300.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:23446851-23446510 | 20130731
Length = 113
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 54 RVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-T 112
RVG A VY AA+LEYL AEVLELAGNA++D K RI PRHL A+ DEEL L+ G T
Sbjct: 17 RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLFAVMNDEELGKLLVGVT 76
Query: 113 IAGGGVI 119
IA GG++
Sbjct: 77 IAHGGIL 83
>Medtr6g005150.1 | core histone H2A/H2B/H3/H4 | HC |
chr6:630102-630726 | 20130731
Length = 139
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 11/108 (10%)
Query: 26 TSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 85
S+SS+ GLQFP+GRI R +K + R+G A +Y AEVLELAGN ++D
Sbjct: 27 VSKSSKVGLQFPIGRIARFMKKGHYSQ-RIGTGAPIY--------LAEVLELAGNVARDN 77
Query: 86 KVKRIT-PRHLQLAIRGDEELDTLIKGT-IAGGGVIPHIHKSLINKSS 131
K I PRH+ LA R +EL L++G IA GGV+P+I+ L+ K +
Sbjct: 78 KKNIINPPRHVCLAARNVDELGKLLQGVAIASGGVLPNINPVLLPKKN 125
>Medtr7g427690.1 | homeobox leucine zipper HDG11-like protein | HC |
chr7:9275572-9279371 | 20130731
Length = 458
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/38 (78%), Positives = 30/38 (78%)
Query: 95 LQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSK 132
LAIRGDEE DTLIKGTI GG VIPHI KSLINK K
Sbjct: 412 FNLAIRGDEEFDTLIKGTIPGGCVIPHIDKSLINKLPK 449
>Medtr7g010440.1 | histone H2A, putative | LC | chr7:2581222-2576825
| 20130731
Length = 295
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 80 NASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 129
NA++D K RI PRH+QL +R DEEL L+ TIA GGV+ +IH L+ K
Sbjct: 122 NAARDRKKIRIVPRHIQLVVRNDEELSKLLGDVTIANGGVMQNIHNLLLPK 172
>Medtr1g069770.1 | core histone H2A/H2B/H3/H4 | LC |
chr1:30436227-30437199 | 20130731
Length = 106
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 69 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 127
YL +V L GNA+ D + RI PRH+ L IR +EEL+ L G TIA GGV+ I+ L+
Sbjct: 32 YLATKVFRLVGNAAHDNRKTRIIPRHMLLVIRINEELEKLHAGVTIAHGGVLLDINHVLL 91
Query: 128 NKSSKE 133
+K+
Sbjct: 92 FMKTKK 97
>Medtr4g005910.1 | histone H2A | HC | chr4:420323-420040 | 20130731
Length = 57
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 89 RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 131
RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ K +
Sbjct: 4 RIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 47