Miyakogusa Predicted Gene
- Lj4g3v1787010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1787010.1 Non Characterized Hit- tr|J3MXC7|J3MXC7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB09G1,51.75,2e-18,seg,NULL; coiled-coil,NULL,CUFF.49740.1
(397 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g029065.1 | transcription initiation factor TFIID subunit-... 441 e-124
Medtr4g113360.1 | transcription initiation factor TFIID subunit-... 113 3e-25
Medtr4g113495.1 | transcription initiation factor TFIID subunit-... 104 1e-22
Medtr4g113340.1 | transcription initiation factor TFIID subunit-... 74 2e-13
Medtr4g113340.2 | transcription initiation factor TFIID subunit-... 74 2e-13
Medtr4g113485.1 | hypothetical protein | LC | chr4:46653239-4665... 58 1e-08
>Medtr7g029065.1 | transcription initiation factor TFIID
subunit-like protein, putative | HC |
chr7:10158682-10164491 | 20130731
Length = 538
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/369 (63%), Positives = 263/369 (71%), Gaps = 4/369 (1%)
Query: 6 RPPTLHGIPRENRTLHMSLTEACNSQRNILVLDLENKPLEMPSSTLNITQDLAMTEGLSD 65
RPPTLHGIPRE+RTLHMSLT A N QRN+ V+D ++KPLE+PSST N+TQDL +TEGL D
Sbjct: 53 RPPTLHGIPRESRTLHMSLTGASNYQRNLFVIDSDSKPLELPSSTQNLTQDLIITEGLRD 112
Query: 66 ALVESPKDQTCEAPKQADVEALKEAPLEIPKEVLIEFQHEAPIEAPNEVSKEADTVSNSH 125
AL E+PKDQT EAPK+ VE LK+ PLE KE L EAPIEAPNE+SKE DTVSNSH
Sbjct: 113 ALNEAPKDQTVEAPKEVHVEVLKDVPLETSKEDLTGLPPEAPIEAPNEISKETDTVSNSH 172
Query: 126 ERKRPIKIKVKQSSATSRADTDNQMVERSLGARNEMDHGASSSVSVDAPQRNFVETLSIS 185
ERKR KIKVKQSSATSRADTDNQ++ERSLG RNE DHGASSSVSVDAPQRNF ET+SIS
Sbjct: 173 ERKRLFKIKVKQSSATSRADTDNQLIERSLGGRNETDHGASSSVSVDAPQRNFAETVSIS 232
Query: 186 NHNIEEVNSCHDHCSRMTASIGSAKFLSNGDELVKELQCTADSSVVHXXXXXXXXXXXXX 245
NHNIEEVNSC++ SRMTASIGSAK LS+GDELVKELQCTADSSVV+
Sbjct: 233 NHNIEEVNSCYNPGSRMTASIGSAKILSDGDELVKELQCTADSSVVYSQVQPEDPSPSSI 292
Query: 246 XXXXXXXXXARRYVSLQTLSASRFDVDGGSLGKEISARGXXXXXXXXXX----XXXXXXX 301
ARR+ SLQTLS +RFD G S GKE+ ARG
Sbjct: 293 IQDNNIDDDARRFASLQTLSVTRFDQAGESCGKEVPARGKHKHKDKDKKRKRESHKGQQN 352
Query: 302 DPEYXXXXXXXXXXXXXXXXMAKLQGDAAKRSSVDLSSKKEEPEVDVAKQLKSVEPSGYN 361
DPEY +AKL + AKRSS+DLS KKEEPEV+ AKQLKSVEPS YN
Sbjct: 353 DPEYLERKRLKKEKKRKEKELAKLLSNEAKRSSIDLSCKKEEPEVNDAKQLKSVEPSCYN 412
Query: 362 SQSEFRRID 370
S SE R+D
Sbjct: 413 SVSEIGRVD 421
>Medtr4g113360.1 | transcription initiation factor TFIID
subunit-like protein | HC | chr4:46599761-46601154 |
20130731
Length = 162
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 69/106 (65%)
Query: 177 NFVETLSISNHNIEEVNSCHDHCSRMTASIGSAKFLSNGDELVKELQCTADSSVVHXXXX 236
NF E++SI NHNIEEVN+C+ SRMT IGSAK LS+GDELVKELQCTADSSVV+
Sbjct: 26 NFAESVSIDNHNIEEVNACYGPGSRMTTIIGSAKILSDGDELVKELQCTADSSVVYSQPQ 85
Query: 237 XXXXXXXXXXXXXXXXXXARRYVSLQTLSASRFDVDGGSLGKEISA 282
ARR+ SLQT+S +RFD DG S KE+ A
Sbjct: 86 PEDPSLSSIIQDNKIDADARRFASLQTVSVARFDHDGESYRKEVPA 131
>Medtr4g113495.1 | transcription initiation factor TFIID
subunit-like protein | HC | chr4:46655762-46655354 |
20130731
Length = 105
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 60/75 (80%)
Query: 158 RNEMDHGASSSVSVDAPQRNFVETLSISNHNIEEVNSCHDHCSRMTASIGSAKFLSNGDE 217
+ + + GASS VS+DAPQRNF E+ NHNIEEVNSC+ SR+TA IGSA+FLS GDE
Sbjct: 8 KEKANQGASSLVSIDAPQRNFGESDRFDNHNIEEVNSCYGPGSRLTAIIGSAQFLSPGDE 67
Query: 218 LVKELQCTADSSVVH 232
LVKELQCT DSSVV+
Sbjct: 68 LVKELQCTTDSSVVY 82
>Medtr4g113340.1 | transcription initiation factor TFIID
subunit-like protein | HC | chr4:46586982-46587308 |
20130731
Length = 108
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 47/82 (57%)
Query: 202 MTASIGSAKFLSNGDELVKELQCTADSSVVHXXXXXXXXXXXXXXXXXXXXXXARRYVSL 261
MTA IGSAK LS+GDE VKELQCT DSSVV+ ARR+ L
Sbjct: 1 MTAIIGSAKILSDGDESVKELQCTDDSSVVYSQPQPEDPSLSSIIQYNNIDADARRFAIL 60
Query: 262 QTLSASRFDVDGGSLGKEISAR 283
QT+S +RFD DG S G E+ A
Sbjct: 61 QTVSVARFDHDGESCGNEVPAW 82
>Medtr4g113340.2 | transcription initiation factor TFIID
subunit-like protein | HC | chr4:46586982-46587308 |
20130731
Length = 108
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 47/82 (57%)
Query: 202 MTASIGSAKFLSNGDELVKELQCTADSSVVHXXXXXXXXXXXXXXXXXXXXXXARRYVSL 261
MTA IGSAK LS+GDE VKELQCT DSSVV+ ARR+ L
Sbjct: 1 MTAIIGSAKILSDGDESVKELQCTDDSSVVYSQPQPEDPSLSSIIQYNNIDADARRFAIL 60
Query: 262 QTLSASRFDVDGGSLGKEISAR 283
QT+S +RFD DG S G E+ A
Sbjct: 61 QTVSVARFDHDGESCGNEVPAW 82
>Medtr4g113485.1 | hypothetical protein | LC |
chr4:46653239-46652807 | 20130731
Length = 92
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 322 MAKLQGDAAKRSSVDLSSKKEEPEVDVAKQLKSVEPSGYNSQSEFRRIDATKP 374
+AKL D AKRS +LS KKEEPEVD AKQLK EPS YN SE + ID TKP
Sbjct: 12 LAKLPSDEAKRSFTNLSCKKEEPEVDDAKQLK-FEPSSYNPISEIKGID-TKP 62