Miyakogusa Predicted Gene

Lj4g3v1786990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1786990.1 CUFF.49741.1
         (600 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1091s0010.1 | transcription initiation factor TFIID subunit...   217   2e-56
Medtr0268s0020.1 | transcription initiation factor TFIID protein...   147   3e-35
Medtr3g104720.1 | puromycin-sensitive aminopeptidase-like protei...    56   1e-07

>Medtr1091s0010.1 | transcription initiation factor TFIID
           subunit-like protein | HC | scaffold1091:2528-101 |
           20130731
          Length = 115

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/115 (87%), Positives = 107/115 (93%)

Query: 400 ANCAVCKVDNSGATALSCSASCKDLYGTQSIGLYGKIRSWKSVAVLQMLEKQMGPESFRR 459
           ANCAVCK D+SGAT LSC ASCKDLYGTQ IGLYG+IR+WKSVAV+QMLEKQMGPESFRR
Sbjct: 1   ANCAVCKADDSGATILSCPASCKDLYGTQCIGLYGRIRAWKSVAVVQMLEKQMGPESFRR 60

Query: 460 ILQTIVARAQDKSRSMKTLSTKEFRHFANKVGNLERPFLKDFFPRWVGSCGCPDL 514
           ILQ IV RAQDK+R +KTLSTKEFRHFANKVGNLERPFLKDFFPRWV SCGCPDL
Sbjct: 61  ILQAIVTRAQDKTRFVKTLSTKEFRHFANKVGNLERPFLKDFFPRWVSSCGCPDL 115


>Medtr0268s0020.1 | transcription initiation factor TFIID protein |
           HC | scaffold0268:4297-3690 | 20130731
          Length = 83

 Score =  147 bits (371), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/76 (84%), Positives = 70/76 (92%)

Query: 152 NVRSVRIDYWVEKAETGIHFRDNLLHTDNQIRRARCWFPCIDDNSQRCCYDLEFTVAHNL 211
           NVR VRI+Y +EKAETG+HFRD++LHTDNQIRRARCWFPCIDDN Q+CCYDLEFTVAHNL
Sbjct: 7   NVRLVRINYSIEKAETGVHFRDSVLHTDNQIRRARCWFPCIDDNIQQCCYDLEFTVAHNL 66

Query: 212 VAVSTGSLLYQVLSKD 227
           VAVSTGSLLYQV   D
Sbjct: 67  VAVSTGSLLYQVEMND 82


>Medtr3g104720.1 | puromycin-sensitive aminopeptidase-like protein |
           HC | chr3:48281753-48275276 | 20130731
          Length = 876

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 121/300 (40%), Gaps = 11/300 (3%)

Query: 172 RDNLLHTDNQIRRARCWFPCIDDNSQRCCYDLEFTVAHNLVAVSTGSLLYQVLSKDNPPR 231
           + N+  T  +   AR  FPC D+ + +  + +   V  +LVA+S   +  + + ++    
Sbjct: 129 KKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSDLVALSNMPIAEEKIDRN---I 185

Query: 232 KTYVYKLDVPVAARWISLAVAPFEILPDH--QFSLVSHMCLPPNLSKMRNTVDFFHSAFS 289
           KT  Y+    ++   +++ V  F+ + DH      V   C     ++ +  +D       
Sbjct: 186 KTVSYQESPIMSTYLVAVVVGLFDYVEDHTPDGVKVRVYCQVGKANQGKFALDVAVKTLG 245

Query: 290 CYKDYLSLDFPFDSYKQVFIEPEMAVXXXXXXXXXXXXXXQVLFDEKVIDQTIDTRVKL- 348
            YKDY    +       + I P+ A                +L+D++        RV + 
Sbjct: 246 LYKDYFDTPYTLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVAVV 304

Query: 349 -AYALARQWFGVYISPEAPNDEWLLEGLAGFLTDFFIKKHLGNNEARYLRYKANCAVCKV 407
            A+ LA QWFG  ++ E     WL EG A +++   +       +        +    K+
Sbjct: 305 VAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAVDGLFPEWKIWAQFLNESTEGLKL 364

Query: 408 DNSGATALSCSASCKDLYGTQSIGLYGKIRSWKSVAVLQMLEKQMGPESFRRILQTIVAR 467
           D     A S     +  +  +   ++  I   K  +V++ML+  +G ESF++ L + + R
Sbjct: 365 D---GLAESHPIEVEINHAREIDEIFDAISYRKGASVIRMLQSYLGAESFQKSLASYIKR 421