Miyakogusa Predicted Gene

Lj4g3v1784860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1784860.1 Non Characterized Hit- tr|I1LB73|I1LB73_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,37.3,3e-19,Nucleic
acid-binding proteins,Nucleic acid-binding, OB-fold-like; no
description,Nucleic acid-bindin,CUFF.49779.1
         (210 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g111750.1 | single-stranded DNA-binding protein | HC | chr...   254   5e-68
Medtr1g083740.2 | single-stranded DNA-binding protein | HC | chr...    99   3e-21
Medtr1g083740.1 | single-stranded DNA-binding protein | HC | chr...    97   1e-20

>Medtr4g111750.1 | single-stranded DNA-binding protein | HC |
           chr4:46174748-46178738 | 20130731
          Length = 239

 Score =  254 bits (648), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 131/157 (83%), Positives = 142/157 (90%)

Query: 54  QTERTIFDRPLENGLDVGIYRAILVGKVGQTPLQKKLKSGTVVTLLSLGTGGIRNNRRPL 113
           QTERT FDRPLENGLD G+YRAILVGK GQ PLQKKLKSGTVVTLLS+GTGGIRNNRRPL
Sbjct: 83  QTERTFFDRPLENGLDPGVYRAILVGKAGQKPLQKKLKSGTVVTLLSIGTGGIRNNRRPL 142

Query: 114 DNESPRDYANRCAVQWHRVTIYPERLGTLVMKHATPGSTLYVEGNLESKVFSDPTTGLVR 173
           D+E+PR+YANRCAVQWHRVT+YPERLG L+MK   PGSTLYVEGNLE+KVFSDP TGLVR
Sbjct: 143 DHENPREYANRCAVQWHRVTVYPERLGNLLMKTVLPGSTLYVEGNLETKVFSDPVTGLVR 202

Query: 174 RIREVSVRRNGRVVFLGQGGDADADTQQNDLKAVGYY 210
           R+REV+VRRNGRVVFLG G D    TQQNDL+AVGYY
Sbjct: 203 RVREVAVRRNGRVVFLGPGDDPKQQTQQNDLRAVGYY 239


>Medtr1g083740.2 | single-stranded DNA-binding protein | HC |
           chr1:37273508-37271490 | 20130731
          Length = 204

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 77/119 (64%), Gaps = 6/119 (5%)

Query: 71  GIYRAILVGKVGQTPLQKKLKSGTVVTLLSLGTGGIRNNRRPLDNESPRDYANRCAVQWH 130
           G+++AI+ GKVGQ P+QK L++G  VT+ ++GTGG+ + R     + P+        QWH
Sbjct: 81  GVHKAIICGKVGQAPVQKILRNGKNVTIFTVGTGGMYDQRIVGSKDLPK------PAQWH 134

Query: 131 RVTIYPERLGTLVMKHATPGSTLYVEGNLESKVFSDPTTGLVRRIREVSVRRNGRVVFL 189
           R+ ++ E LG   ++     S++YVEG +E++V++D   G V+ I E+ VRR+G VV++
Sbjct: 135 RIAVHNEVLGAYAVQQLFKNSSVYVEGEIETRVYNDSINGEVKSIPEICVRRDGTVVYM 193


>Medtr1g083740.1 | single-stranded DNA-binding protein | HC |
           chr1:37273508-37270161 | 20130731
          Length = 212

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 78/126 (61%), Gaps = 6/126 (4%)

Query: 71  GIYRAILVGKVGQTPLQKKLKSGTVVTLLSLGTGGIRNNRRPLDNESPRDYANRCAVQWH 130
           G+++AI+ GKVGQ P+QK L++G  VT+ ++GTGG+ + R     + P+        QWH
Sbjct: 81  GVHKAIICGKVGQAPVQKILRNGKNVTIFTVGTGGMYDQRIVGSKDLPK------PAQWH 134

Query: 131 RVTIYPERLGTLVMKHATPGSTLYVEGNLESKVFSDPTTGLVRRIREVSVRRNGRVVFLG 190
           R+ ++ E LG   ++     S++YVEG +E++V++D   G V+ I E+ VRR+G++  + 
Sbjct: 135 RIAVHNEVLGAYAVQQLFKNSSVYVEGEIETRVYNDSINGEVKSIPEICVRRDGKLRLIR 194

Query: 191 QGGDAD 196
            G   D
Sbjct: 195 SGESVD 200