Miyakogusa Predicted Gene

Lj4g3v1736180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1736180.1 Non Characterized Hit- tr|I1IR12|I1IR12_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,44.26,1e-18,coiled-coil,NULL; seg,NULL,CUFF.49674.1
         (319 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g109960.1 | TMV-MP30 binding protein 2C, putative | HC | c...   401   e-112

>Medtr4g109960.1 | TMV-MP30 binding protein 2C, putative | HC |
           chr4:45752766-45748808 | 20130731
          Length = 326

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/328 (65%), Positives = 244/328 (74%), Gaps = 11/328 (3%)

Query: 1   MQHFVD---SGGFADPSSA------AANANLDRVLFNDLVEIVPLVQSLIDQDRKASRSF 51
           MQHF D   S  F DP S+      A N+NL+R LFNDLVEIVPLV+SL+D  RKASRSF
Sbjct: 1   MQHFADLQNSSEFGDPDSSTNAVSSAPNSNLNRDLFNDLVEIVPLVESLMD--RKASRSF 58

Query: 52  TRRGSMVYTKTPTREALFKRATDSKSRNTSQSIPAKKKRDPEDKEQGKNGCNXXXXXXXX 111
           TRRGSM+YTK P RE+L+K+A DSK+RN +QSIP+ K  D   KEQGKN  +        
Sbjct: 59  TRRGSMIYTKAPARESLYKKAIDSKTRNVAQSIPSGKINDHGAKEQGKNDNSNSDADSFS 118

Query: 112 XXXXRALTSEKDREELAILKEQVEVLQKQLWEKGELLKSAENSRDQMNAFNAKLDELKHQ 171
               RA TSEKD EELA LKEQVE LQ +L EK ELLKSAENS+DQMN+ NAKLDE+KHQ
Sbjct: 119 MFSGRAFTSEKDNEELAKLKEQVEELQLKLREKDELLKSAENSKDQMNSVNAKLDEMKHQ 178

Query: 172 VSEKDSLLKYTQQQLSDAKIKLADKQAAFEKIQWETMTSNKKVEKLQGELDSIQADISTF 231
           VSEK+  LKY QQQLSDAKIKLADKQAA EKI WE MTSNKKVEKLQ ELDS+QAD+STF
Sbjct: 179 VSEKEYSLKYAQQQLSDAKIKLADKQAALEKIHWEMMTSNKKVEKLQVELDSVQADVSTF 238

Query: 232 TLLLESLXXXXXXXXXXXXXXXXXXFNQRADIDDLDEIELQKMEEARKAYISAVAVVKEK 291
           TLLLES                   FN   DIDD+DE+E QK+EEARKAYI+AVAV  EK
Sbjct: 239 TLLLESFAKTDTAKYTDDYDTKPYVFNHVPDIDDMDEMECQKIEEARKAYIAAVAVCDEK 298

Query: 292 RDEESIAAAASARLHLQSFIFKSKSCNL 319
           RDEES+AA+A+ARLHLQS +FKSK+ N+
Sbjct: 299 RDEESVAASANARLHLQSLLFKSKNFNM 326