Miyakogusa Predicted Gene

Lj4g3v1721930.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1721930.1 tr|Q9FZ82|Q9FZ82_ARATH F25I16.5 protein
OS=Arabidopsis thaliana GN=F25I16.5 PE=4
SV=1,39.38,2e-17,seg,NULL,CUFF.49641.1
         (300 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g109680.1 | acyl-CoA-binding domain protein | HC | chr4:45...   322   3e-88

>Medtr4g109680.1 | acyl-CoA-binding domain protein | HC |
           chr4:45603316-45596881 | 20130731
          Length = 609

 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/306 (60%), Positives = 212/306 (69%), Gaps = 20/306 (6%)

Query: 1   MYYLHTGIARGSEQRPEKLSLRKQLKLKCQE-QNLNPGQNQGLARYGMGADTSPIMTVLK 59
           MYYLHTGI+R SE RPEKLS++K LKLKCQE QNL PGQNQ + RYG+G D   + T++ 
Sbjct: 318 MYYLHTGISRESELRPEKLSMKKILKLKCQEDQNLIPGQNQDMGRYGVGNDAGQVTTMMN 377

Query: 60  YTQPGRQNIPVNQSLLHSGKKMFEAKVSENISDGGLTIETVIDGKPLRGVLFLNKPNSLN 119
           Y+QP R NIP NQSL   GKK FEAKV+ENIS+G  TIETVIDGKPLRG+LFLNK NSL+
Sbjct: 378 YSQPSRPNIPANQSLPLHGKKTFEAKVTENISEG-YTIETVIDGKPLRGILFLNKQNSLH 436

Query: 120 PAGLAFSRKRTASEIDGVISNGTHPNIFKTPKVLKQNQMENRQXXXXXXXXXXXXXXXXX 179
            +  AF+RKRTA EIDGVISNGTH N  KT KV   NQMENR                  
Sbjct: 437 SSAHAFNRKRTAGEIDGVISNGTHSNKLKTHKV---NQMENRH------SESLYHSSEAV 487

Query: 180 XALTPNNPITATASDTYKVSANPEPEGALLNQNDEKRETPTLGENLRSDGAND--SSKGE 237
            AL   NP+TA AS  +KV  NP  E A LN+N EK ETPTLG NL++D AND  +S+ E
Sbjct: 488 VALAARNPMTANASVNHKVPTNPGLEAASLNRNAEKIETPTLGVNLKNDRANDVTNSRVE 547

Query: 238 AQTNYQTIVPISNLEVPTDDKKSDAPNGKTEFLEPAPTAC---FSNQGAVADSSIPRTGE 294
           AQ+N    +PISN EV   DK SD  N  TEF++PA        SNQGA+ DS+IPRTGE
Sbjct: 548 AQSN----MPISNSEVSRLDKNSDPSNCNTEFMKPATAESAVNLSNQGALVDSTIPRTGE 603

Query: 295 CSEPAK 300
           CSEPAK
Sbjct: 604 CSEPAK 609