Miyakogusa Predicted Gene
- Lj4g3v1720810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1720810.1 Non Characterized Hit- tr|I1JZI1|I1JZI1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.25632 PE,78.68,0,Nucleic
acid-binding proteins,Nucleic acid-binding, OB-fold-like; seg,NULL;
rpa1: replication factor,CUFF.49630.1
(621 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g109580.1 | replication protein A 70 kDa protein | HC | ch... 949 0.0
Medtr4g109580.2 | replication protein A 70 kDa protein | HC | ch... 835 0.0
Medtr4g109590.1 | replication factor-A carboxy-terminal domain p... 308 1e-83
Medtr2g041270.1 | replication protein A 70 kDa protein | HC | ch... 295 8e-80
Medtr3g047950.1 | replication factor A1 | HC | chr3:15999174-160... 240 2e-63
Medtr2g055970.1 | F-box protein interaction domain protein | LC ... 103 4e-22
Medtr1g095050.1 | replication factor-A carboxy-terminal domain p... 76 1e-13
Medtr5g027390.1 | replication factor-A-like protein | LC | chr5:... 73 7e-13
Medtr4g070090.1 | replication factor-A-like protein | HC | chr4:... 73 1e-12
Medtr8g062030.1 | replication factor-A carboxy-terminal domain p... 70 4e-12
Medtr8g076570.1 | FHA domain protein | HC | chr8:32446773-324395... 64 4e-10
Medtr0030s0160.1 | hypothetical protein | LC | scaffold0030:5867... 62 2e-09
Medtr2g048560.1 | replication factor-A carboxy-terminal domain p... 59 2e-08
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p... 55 1e-07
Medtr1g105785.1 | replication factor-A carboxy-terminal domain p... 55 3e-07
>Medtr4g109580.1 | replication protein A 70 kDa protein | HC |
chr4:45544168-45547694 | 20130731
Length = 618
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/622 (74%), Positives = 534/622 (85%), Gaps = 5/622 (0%)
Query: 1 MAKSITPNAVSTLIXXXXXXXXXXLPELIVQVLDLKQSGMNRYMFAANDGKLKLKAILPS 60
MAKS++PNA+STL+ LP+++VQVLDLK SG NRY F+A+DGK KLK I+PS
Sbjct: 1 MAKSVSPNAISTLLSNPSPDSSSDLPDIVVQVLDLKSSG-NRYSFSASDGKKKLKGIIPS 59
Query: 61 SMYSEVLSGNIQNLGLIRILDYTVNDIPNKPEKYLIVTKCEAVSPALEMEIKTEQTAAGI 120
+ YSEVLSG IQNLGLIRILDYT+N IPNK EKYL++ KCE VSPALE EIK+EQ+ GI
Sbjct: 60 NQYSEVLSGKIQNLGLIRILDYTLNVIPNKSEKYLMLIKCEPVSPALETEIKSEQS--GI 117
Query: 121 VLKPREDGGVKSEAA-AGIVLKPKQEMVTKSAAQIVHEQHGNVAPAARMAMTRRVRPLVS 179
LKP+ED VK E + AGIVLKPK +MV+KSAAQI+HEQH N APA R+AMTRRVRPLVS
Sbjct: 118 TLKPKEDDVVKREGSTAGIVLKPKLDMVSKSAAQILHEQHANSAPA-RLAMTRRVRPLVS 176
Query: 180 LNPYQANWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDK 239
LNPY WTIKVSVTSKG MRTYKNARGEGCVFNVELTDE+GTQIQATMFNDAARKFYDK
Sbjct: 177 LNPYMGGWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDK 236
Query: 240 FVLGKVYYISKGTLKVANKQFKTVQNDYEMTLXXXXXXXXXXXXXXFVPETKFNFVQIDQ 299
F +GKVYYISKG+LKVANK FKTV NDYEMTL FVPETKFNFV IDQ
Sbjct: 237 FAMGKVYYISKGSLKVANKNFKTVVNDYEMTLNENSEVEEVANEAAFVPETKFNFVPIDQ 296
Query: 300 LGPFVNKNELVDVVGVVQNVSASTSIRRKINNETIPKRDITIADETKKTVVVSLWNDLAT 359
LGP+VNK+ELVD+VGVV+NVS++ SIRRK NNET+PKRDITIADETKKTVVVSLW DLAT
Sbjct: 297 LGPYVNKSELVDLVGVVKNVSSTMSIRRKSNNETVPKRDITIADETKKTVVVSLWGDLAT 356
Query: 360 NIGQELLDMADKSPVVAIKALRVGDFQGVSLSTISKSLVLINPDIPEAKRLKCWYDAEGK 419
NIGQELLDMADKSPVVAIK+L+VGDFQG+SLS IS+SLVL+NP++PEA++L+CWYD+EGK
Sbjct: 357 NIGQELLDMADKSPVVAIKSLKVGDFQGISLSAISRSLVLVNPEVPEAQKLRCWYDSEGK 416
Query: 420 DAPLASVGSGSSATSPNGARSVYADRVPLSHITTNTSLGQDKPVFFSVRGHIRFIKPDQT 479
DA +A++ SGS ++S +G+RSVY+DRVPLS+IT+N SLG +KP FFS+RG+I FIK DQ
Sbjct: 417 DAAMAAISSGSISSSNSGSRSVYSDRVPLSYITSNLSLGAEKPAFFSIRGNISFIKADQA 476
Query: 480 MTYRACKNSNKKVTESFGAGYWCEACQKNDEQCSLRYIMVVKVSDASGEAYISVFNDEAE 539
M YRACK NKKVTE AGYWCE+CQKND +C+ RYIMV KVSDASGEA++S FN+EAE
Sbjct: 477 MWYRACKTCNKKVTEDMDAGYWCESCQKNDAECNFRYIMVAKVSDASGEAFVSTFNEEAE 536
Query: 540 KIVGCSADELDNLKQQEGEDNPYQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITARAVV 599
KI+GC A+ELDNLK Q+GE+NPY +KLK+ATW+PHL RVSVSQNEYN EKRQRITARAVV
Sbjct: 537 KIIGCPAEELDNLKSQDGEENPYDMKLKKATWIPHLLRVSVSQNEYNGEKRQRITARAVV 596
Query: 600 PVDFAAESRLLLEEISKMKAAQ 621
P+DFAAES+ LLE+ISKM A+
Sbjct: 597 PIDFAAESKFLLEDISKMVASH 618
>Medtr4g109580.2 | replication protein A 70 kDa protein | HC |
chr4:45544168-45547694 | 20130731
Length = 560
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/556 (73%), Positives = 474/556 (85%), Gaps = 5/556 (0%)
Query: 1 MAKSITPNAVSTLIXXXXXXXXXXLPELIVQVLDLKQSGMNRYMFAANDGKLKLKAILPS 60
MAKS++PNA+STL+ LP+++VQVLDLK SG NRY F+A+DGK KLK I+PS
Sbjct: 1 MAKSVSPNAISTLLSNPSPDSSSDLPDIVVQVLDLKSSG-NRYSFSASDGKKKLKGIIPS 59
Query: 61 SMYSEVLSGNIQNLGLIRILDYTVNDIPNKPEKYLIVTKCEAVSPALEMEIKTEQTAAGI 120
+ YSEVLSG IQNLGLIRILDYT+N IPNK EKYL++ KCE VSPALE EIK+EQ+ GI
Sbjct: 60 NQYSEVLSGKIQNLGLIRILDYTLNVIPNKSEKYLMLIKCEPVSPALETEIKSEQS--GI 117
Query: 121 VLKPREDGGVKSEAA-AGIVLKPKQEMVTKSAAQIVHEQHGNVAPAARMAMTRRVRPLVS 179
LKP+ED VK E + AGIVLKPK +MV+KSAAQI+HEQH N APA R+AMTRRVRPLVS
Sbjct: 118 TLKPKEDDVVKREGSTAGIVLKPKLDMVSKSAAQILHEQHANSAPA-RLAMTRRVRPLVS 176
Query: 180 LNPYQANWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDK 239
LNPY WTIKVSVTSKG MRTYKNARGEGCVFNVELTDE+GTQIQATMFNDAARKFYDK
Sbjct: 177 LNPYMGGWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDK 236
Query: 240 FVLGKVYYISKGTLKVANKQFKTVQNDYEMTLXXXXXXXXXXXXXXFVPETKFNFVQIDQ 299
F +GKVYYISKG+LKVANK FKTV NDYEMTL FVPETKFNFV IDQ
Sbjct: 237 FAMGKVYYISKGSLKVANKNFKTVVNDYEMTLNENSEVEEVANEAAFVPETKFNFVPIDQ 296
Query: 300 LGPFVNKNELVDVVGVVQNVSASTSIRRKINNETIPKRDITIADETKKTVVVSLWNDLAT 359
LGP+VNK+ELVD+VGVV+NVS++ SIRRK NNET+PKRDITIADETKKTVVVSLW DLAT
Sbjct: 297 LGPYVNKSELVDLVGVVKNVSSTMSIRRKSNNETVPKRDITIADETKKTVVVSLWGDLAT 356
Query: 360 NIGQELLDMADKSPVVAIKALRVGDFQGVSLSTISKSLVLINPDIPEAKRLKCWYDAEGK 419
NIGQELLDMADKSPVVAIK+L+VGDFQG+SLS IS+SLVL+NP++PEA++L+CWYD+EGK
Sbjct: 357 NIGQELLDMADKSPVVAIKSLKVGDFQGISLSAISRSLVLVNPEVPEAQKLRCWYDSEGK 416
Query: 420 DAPLASVGSGSSATSPNGARSVYADRVPLSHITTNTSLGQDKPVFFSVRGHIRFIKPDQT 479
DA +A++ SGS ++S +G+RSVY+DRVPLS+IT+N SLG +KP FFS+RG+I FIK DQ
Sbjct: 417 DAAMAAISSGSISSSNSGSRSVYSDRVPLSYITSNLSLGAEKPAFFSIRGNISFIKADQA 476
Query: 480 MTYRACKNSNKKVTESFGAGYWCEACQKNDEQCSLRYIMVVKVSDASGEAYISVFNDEAE 539
M YRACK NKKVTE AGYWCE+CQKND +C+ RYIMV KVSDASGEA++S FN+EAE
Sbjct: 477 MWYRACKTCNKKVTEDMDAGYWCESCQKNDAECNFRYIMVAKVSDASGEAFVSTFNEEAE 536
Query: 540 KIVGCSADELDNLKQQ 555
KI+GC A+ELDNLK Q
Sbjct: 537 KIIGCPAEELDNLKSQ 552
>Medtr4g109590.1 | replication factor-A carboxy-terminal domain
protein | HC | chr4:45550465-45552007 | 20130731
Length = 267
Score = 308 bits (788), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/276 (56%), Positives = 197/276 (71%), Gaps = 38/276 (13%)
Query: 339 ITIADETKKTVVVSLWNDLATNIGQELLDMADKSPVVAIKALRVGDFQGVSLSTISKSLV 398
+T+ KKTVVV+LW DLATNIG ELL++ADKSPVVAIK+++V DF GVSLS + +SLV
Sbjct: 10 LTVGCRGKKTVVVTLWGDLATNIGNELLEIADKSPVVAIKSVKVWDFGGVSLSAMHRSLV 69
Query: 399 LINPDIPEAKRLKC---------WYDAEGKDAPLASVGSGSSATSPNGARSVYADRVPLS 449
+INPD+PEA++L+ YD+EGKDA + ++ SGS +S +G RS
Sbjct: 70 MINPDVPEARKLRSSEAGIPLSPRYDSEGKDAAMVALRSGSIPSSNSGIRSFLF------ 123
Query: 450 HITTNTSLGQDKPVFFSVRGHIRFIKPDQTMTYRACKNSNKKVTESFGAGYWCEACQKND 509
L ++P FFS+RG+I FI+PDQ M Y ACK NKK+TES G GY
Sbjct: 124 -------LYFEQPAFFSIRGYISFIRPDQEMWYCACKTCNKKLTESMGDGY--------- 167
Query: 510 EQCSLRYIMVVKVSDASGEAYISVFNDEAEKIVGCSADELDNLKQQEGEDNPYQLKLKQA 569
M+V+VSDAS EAYIS+FN+EAEKI+GCSADEL++L+ QEGE+NPY +KLK+A
Sbjct: 168 -------SMIVRVSDASSEAYISIFNEEAEKIIGCSADELNDLRSQEGEENPYLMKLKKA 220
Query: 570 TWVPHLFRVSVSQNEYNNEKRQRITARAVVPVDFAA 605
TW+PHL RVSVSQNE NNEKRQ+ITA AVVPVD AA
Sbjct: 221 TWIPHLLRVSVSQNENNNEKRQKITAVAVVPVDLAA 256
>Medtr2g041270.1 | replication protein A 70 kDa protein | HC |
chr2:18105202-18100698 | 20130731
Length = 627
Score = 295 bits (755), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 197/652 (30%), Positives = 332/652 (50%), Gaps = 61/652 (9%)
Query: 1 MAKSITPNAVSTLIXXXXXXXXXXLPELIVQVLDL------KQSGMNRYMFAANDGKLKL 54
MA ++T NA++ +I ++QVLD+ K S RY +D
Sbjct: 1 MAVNLTANAITAIIAGDVDAKP------LLQVLDIATIVSTKNSQQQRYRLLLSDAVSSH 54
Query: 55 KAILPSSMYSEVLSGNIQNLGLIRILDYTVNDIPNKPEKYLIVTKCEAVSPALEM----- 109
A+L + + V +G ++ ++++LDY + N+ K ++V E + P E+
Sbjct: 55 HAMLAAQLNDRVNTGRVKQGSIVQLLDYICTPLQNR--KIIMVLNMETIIPDCEIIGNPK 112
Query: 110 -----EIKTEQ-----TAAGIVLKPREDGGVKSEAAAGIVLKPKQEMVTKSAAQIVHEQH 159
E+ ++ T AG R + ++ A + + +++
Sbjct: 113 SFVDSELPVQKALPDNTVAG---SSRSINNLAAQNAGSNGQNFRPTVQPPYQPPPLYKGR 169
Query: 160 G----NVAPAARMAMTRRVRPLVSLNPYQANWTIKVSVTSKGNMRTYKNARGEGCVFNVE 215
G N APA RV P+ +LNPYQ W IK VT+KG++R Y NARG+G VF+ +
Sbjct: 170 GAVMKNEAPA-------RVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD 222
Query: 216 LTDEEGTQIQATMFNDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLXXXX 275
L D +G +I+ T FN +FY+ +GKVY ISKG+LK A K F ++N++E+ L
Sbjct: 223 LLDSDGGEIRVTCFNAVVDRFYEAIEVGKVYLISKGSLKPAQKNFNHLKNEWEIMLDLNS 282
Query: 276 XXXXXXXXXXFVPETKFNFVQIDQLGPFVNKNELVDVVGVVQNVSASTSIRRKINNETIP 335
+P +F+F I + V N ++DV+GVV +V+ S I RK ET+
Sbjct: 283 TIELCPDEDGSIPRQQFSFRPISDI-EIVENNAILDVIGVVTSVNPSVPILRKNGMETL- 340
Query: 336 KRDITIADETKKTVVVSLWNDLATNIGQELLDMADKS--PVVAIKALRVGDFQGVSLSTI 393
+R + + D + K+V ++LW + GQ+L +M D PV+A+KA +V +F G S+ +I
Sbjct: 341 RRVLNLKDNSGKSVELTLWGEFCNREGQKLQEMVDAGVFPVLAVKAGKVNEFSGKSIGSI 400
Query: 394 SKSLVLINPDIPEAKRLKCWYDAEGKDAPLASVGSGSSATSPNGARSVYADRVPLSHITT 453
S + + INPD PEA+ L+ W+D GKD+ S+ + P R +S I
Sbjct: 401 STTQLFINPDFPEAQTLRNWFDQVGKDSASLSISKDITHGGPKNEI-----RKTVSQI-K 454
Query: 454 NTSLGQD-KPVFFSVRGHIRFIKPDQTMTYRAC------KNSNKKVTESFGAGYWCEACQ 506
+ LG+ KP + ++R + F++ D Y AC + NKKVT+S + C+ C
Sbjct: 455 DEGLGRSGKPDWITMRATVSFMRTD-PFCYTACPLMIGDRPCNKKVTKSGDTKWQCDRCN 513
Query: 507 KNDEQCSLRYIMVVKVSDASGEAYISVFNDEAEKIVGCSADELDNLKQQEGEDNPYQLKL 566
+ E+C RY++ ++ D SG +++ F + E+I+G A +L LK ++ +D + +
Sbjct: 514 QEFEECDYRYLLQAQIQDHSGLTWVTAFQEAGEEIMGYPAKDLYVLKYEQEDDEKFGDII 573
Query: 567 KQATWVPHLFRVSVSQNEYNNEKRQRITARAVVPVDFAAESRLLLEEISKMK 618
K + +FR+ + + YN E++ +IT V+++AESR +L+ ISK +
Sbjct: 574 KSRLFNEFVFRLKIKEELYNEEQKVKITVVKADKVNYSAESRYMLDFISKFR 625
>Medtr3g047950.1 | replication factor A1 | HC |
chr3:15999174-16004293 | 20130731
Length = 824
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 168/610 (27%), Positives = 288/610 (47%), Gaps = 75/610 (12%)
Query: 29 IVQVLDLKQSGMNRYMFAANDGKLKLKAILPSSMYSEVLSGNIQNLGLIRILDYTVNDIP 88
I ++D S + +Y +DG A + + + V +G ++ ++++LDY I
Sbjct: 29 ITLLVDSDDSLLRKYYLKLSDGVYSHSATIAAQLNDGVGTGRVKEGSIVKLLDYVCPTIV 88
Query: 89 NKPEKYLIVTKCEAVSPALEMEIKTEQTAAGIVLKPREDGGVKSEAAAGIVLKPKQEMVT 148
+ K +IV K E IVL
Sbjct: 89 IR--KIIIVHKMET-----------------------------------IVLD------- 104
Query: 149 KSAAQIVHEQHGNVAPAARMAMTRRVRPLVSLNPYQANWTIKVSVTSKGNMRTYKNARGE 208
+QI+ V P M P+ +L+PY+ W IK VTSKG++R Y + G
Sbjct: 105 ---SQIIGNPKSFVDPELPMVENEEPIPIAALHPYKGKWAIKARVTSKGHLRHYNSPEGY 161
Query: 209 GCVFNVELTDEEGTQIQATMFNDAARKFYDKFVLGKVYYISK-GTLKVANKQFKTVQNDY 267
F+ ++ D +G ++Q T ND FY+ +GKVY ISK G + V +K K ++ D+
Sbjct: 162 LKAFSFDVLDSDGGEVQVTCLNDVIDSFYEVIEVGKVYLISKAGLIPVGSKDLKHLKIDW 221
Query: 268 EMTLXXXXXXXXXXXXXXFVPETKFNFVQIDQLGPFVNKNELVDVVGVVQNVSASTSIRR 327
E+ L +P KF+F I + + N ++DV+GVV +V++S + R
Sbjct: 222 EIMLNSNSTVELCPDEDGSIPMHKFSFRSISDIEN-IESNTILDVIGVVTSVNSSVLMSR 280
Query: 328 KINNETIPKRDITIADETKKTVVVSLWNDLATNIGQELLDMADKS--PVVAIKALRVGDF 385
+ N + KR + + D + ++V ++LW +L GQEL D+ D PV+A+KA +V +F
Sbjct: 281 E-NALEMRKRILNLKDNSGRSVELTLWGELCNREGQELKDIVDAGGFPVLAVKAGKVIEF 339
Query: 386 QGVSLSTISKSLVLINPDIPEAKRLKCWYDAEGKDAPLASVGSGSSATSPNGARSVYADR 445
+G S++ I S + +NPD PEA+ L+ W+D +GKD+ +S+ S P R
Sbjct: 340 RGKSINAIPISRLFVNPDFPEAQSLRLWFDQDGKDSASSSISKDISYGGPKNEL-----R 394
Query: 446 VPLSHITTNTSLGQDKPVFFSVRGHIRFIKPDQTMTYRAC-----------------KNS 488
+S I DKP + + R I F+K D Y AC +
Sbjct: 395 KTVSQIKDEGLGCTDKPDWITTRATISFMKTD-VFCYTACPVMIGDRRCNKKVTRSGERC 453
Query: 489 NKKVTESFGAGYWCEACQKNDEQCSLRYIMVVKVSDASGEAYISVFNDEAEKIVGCSADE 548
+KKVT++ + C+ C + + C RYI+ ++ D +G ++ FN+ E I+G SA +
Sbjct: 454 SKKVTKTVNTRWKCDTCNQEFDVCEYRYILQAQIVDHTGLTCVTAFNEAGEDIMGYSAKD 513
Query: 549 LDNLKQQEGEDNPYQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITARAVVPVDFAAESR 608
L LK ++ +D ++ +K + +FR+ + + E++ +I V+++AES+
Sbjct: 514 LYVLKYEQEDDERFRDIIKSILFNQFVFRLKIQKELCGEEQKVKIIVVKADKVNYSAESK 573
Query: 609 LLLEEISKMK 618
+L+ ISK +
Sbjct: 574 YMLDLISKFE 583
>Medtr2g055970.1 | F-box protein interaction domain protein | LC |
chr2:24000830-24002612 | 20130731
Length = 563
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 77/120 (64%), Gaps = 6/120 (5%)
Query: 1 MAKSITPNAVSTLIXXXXXXXXXXLPELIVQVLDLKQSGMNRYMFAANDGKLKLKAILPS 60
M KS+TPNA+STL+ LPE +VQV++ +Q G N+Y+F+A+DGK KLK I+P+
Sbjct: 1 MVKSVTPNAISTLLTNPSTDSSSILPEFVVQVVNPQQIG-NKYLFSASDGKTKLKVIIPT 59
Query: 61 SMYSEVLSGNIQNLGLIRILDYTVNDIPNKPEKYLIVTKCEAVSPALEMEIKTEQTAAGI 120
+ +EV SG +NL LIRI+DY ++DIP EK +IV K E V IK E T I
Sbjct: 60 NQDTEVSSGKTKNLDLIRIVDYILDDIPQTSEKCIIVRKFEHVC-----AIKNEHTGIRI 114
>Medtr1g095050.1 | replication factor-A carboxy-terminal domain
protein | HC | chr1:42780709-42781647 | 20130731
Length = 167
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 25/105 (23%)
Query: 514 LRYIMVVKVSDASGEAYISVFNDEAEKIVGCSADELDNLKQQEGEDNPYQLKLKQATWVP 573
L Y+MV++VSDASGEAYIS FN+EA KI+GCS D+ L+ QEGE +++
Sbjct: 76 LEYMMVIRVSDASGEAYISTFNEEAGKIIGCSTDD---LRSQEGESLSNEIE-------- 124
Query: 574 HLFRVSVSQNEYNNEKRQRITARAVVPVDFAAESRLLLEEISKMK 618
N ++EK+Q T+ VVPV E++ LL++ISKM+
Sbjct: 125 --------ANYLDDEKKQ--TSWLVVPV----ETKFLLKDISKME 155
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 43/84 (51%), Gaps = 27/84 (32%)
Query: 346 KKTVVVSLWNDLATNIGQELLDMADKSPVVAIKALRVGDFQGVSLSTISKSLVLINPDIP 405
KKTVVVS W DLATN +RV ++ SLSTI +SLVLINP +
Sbjct: 3 KKTVVVSFWGDLATN-----------------TCVRVDNYCA-SLSTICRSLVLINPVV- 43
Query: 406 EAKRLKCWYDAEGKDAPLASVGSG 429
YD EG DA +++V G
Sbjct: 44 --------YDYEGMDASMSAVSFG 59
>Medtr5g027390.1 | replication factor-A-like protein | LC |
chr5:11382204-11385197 | 20130731
Length = 477
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 150/367 (40%), Gaps = 26/367 (7%)
Query: 243 GKVYYISKGTLKVANKQFKTVQNDYEM-TLXXXXXXXXXXXXXXFVPETKFNFVQIDQLG 301
GK+Y IS + +++ V+N+ M + +P F FV + L
Sbjct: 62 GKIYVISHYEVSKNKEKYAVVENNPSMLSFYGDAIVTEEGSDDNTIPRYIFEFVNFNDLI 121
Query: 302 PFVNKNELVDVVGVVQNVSASTSIRRKIN-NETIPKRDITIADETKKTVVVSLWNDLATN 360
K L DV+G + +V I K N + + + D + + V+LW+D A
Sbjct: 122 KRCGKEVLADVIGFIIDVDP---IEEKTTVNGKVDMLSLHLGDGSGNVLKVTLWDDYAPM 178
Query: 361 IGQELLDMADKSP---VVAIKALRVGDFQG---VSLSTISKSLVLINPDIPEAKRLKCWY 414
Q+L+D +P V + V +QG + +S+ + + IN D PE
Sbjct: 179 FNQKLIDQMHATPKPNVAIFTSTLVKQYQGNCELYVSSSRSTTIYINIDTPEVA------ 232
Query: 415 DAEGKDAPLASVGSGSSATSPNGARSVYADRVPLSHITTNTSLG-QDKPVFFSVRGHIRF 473
D L+S G S + D +S + + G V ++ +
Sbjct: 233 -----DLILSSKGENSVLKTTETLSLTNVDVKTISELLSMAVSGVYQGDVVYNCVATVDD 287
Query: 474 IKPDQTMTYRACKNSNKKVTESFGAGYWCEACQKNDEQCSLRYIMVVKVSDASGEAYISV 533
I + Y +C + K V+ S + CE C K + +RY + ++V+D++ +
Sbjct: 288 ILLKNGLYYVSCPHCRKTVS-STETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTIFVL 346
Query: 534 FNDEAEKIVGCSADELD-NLKQQEGEDNPYQLKLKQATWVPHLFRVSVSQNEYNNEKRQR 592
F + AE++ D+L +L+ Q G D+ +L+ H+F+V +S + + Q
Sbjct: 347 FAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKLS-SYFERRGVQS 405
Query: 593 ITARAVV 599
TA ++
Sbjct: 406 FTAHKIL 412
>Medtr4g070090.1 | replication factor-A-like protein | HC |
chr4:26377794-26380276 | 20130731
Length = 502
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 150/367 (40%), Gaps = 26/367 (7%)
Query: 243 GKVYYISKGTLKVANKQFKTVQNDYEM-TLXXXXXXXXXXXXXXFVPETKFNFVQIDQLG 301
GK+Y IS + +++ V+N+ M + +P F FV + L
Sbjct: 94 GKIYVISHFEVSKNKEKYAVVENNPSMLSFYGDAIVTEEGSDDNTIPRYIFEFVNFNDLI 153
Query: 302 PFVNKNELVDVVGVVQNVSASTSIRRKIN-NETIPKRDITIADETKKTVVVSLWNDLATN 360
K L DV+G + +V I K N + + + D + + V+LW+D A
Sbjct: 154 KRCGKEVLADVIGFIIDVDP---IEEKTTVNGKVDMLSLHLGDGSGNVLKVTLWDDYAPM 210
Query: 361 IGQELLDMADKSP---VVAIKALRVGDFQG---VSLSTISKSLVLINPDIPEAKRLKCWY 414
Q+L+D +P V + V +QG + +S+ + + IN D PE
Sbjct: 211 FNQKLIDQMHATPKPNVAIFTSTLVKQYQGNCELYVSSSRSTTIYINIDTPEVA------ 264
Query: 415 DAEGKDAPLASVGSGSSATSPNGARSVYADRVPLSHITTNTSLG-QDKPVFFSVRGHIRF 473
D L+S G S + D +S + + G V ++ +
Sbjct: 265 -----DLILSSKGKNSVLKTTETLSLTNVDVKTISELLSMAVSGVYQGDVVYNCVATVDD 319
Query: 474 IKPDQTMTYRACKNSNKKVTESFGAGYWCEACQKNDEQCSLRYIMVVKVSDASGEAYISV 533
I + Y +C + K V+ S + CE C K + +RY + ++V+D++ +
Sbjct: 320 ILLKNGLYYVSCPHCRKTVS-STETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTIFVL 378
Query: 534 FNDEAEKIVGCSADELD-NLKQQEGEDNPYQLKLKQATWVPHLFRVSVSQNEYNNEKRQR 592
F + AE++ D+L +L+ Q G D+ +L+ H+F+V +S + + Q
Sbjct: 379 FAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKLS-SYFERRGVQS 437
Query: 593 ITARAVV 599
TA ++
Sbjct: 438 FTAHKIL 444
>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:25901653-25904109 | 20130731
Length = 575
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 153/373 (41%), Gaps = 33/373 (8%)
Query: 182 PYQANWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDKFV 241
P + NW I+V V + T+ + + L D+ G +IQA + F +
Sbjct: 13 PGRLNWRIRVRVVRMWEVPTFLKPN-QANSLEMVLLDQMGVKIQAIVRKQLIYVFQKRLR 71
Query: 242 LGKVYYISKGTLKVANKQFKTVQNDYEMTLXXXXXXXXXXXXXXFVPETKFNFVQI-DQL 300
G+VY IS ++ + ++ + Y++ +P +F I D
Sbjct: 72 EGEVYNISYFSVAPSTGSYRAATHPYKIVFQMTTKVQSCTSAT--IPLYGLSFTSIVDVS 129
Query: 301 GPFVNKNELVDVVGVVQNVSASTSIRRKINNETIPKRDI-TIADETKKTVV------VSL 353
V + LVDV+G+V VS R + + ++ K I + D + K V+L
Sbjct: 130 NHTVEYDYLVDVMGLVTAVSEE---REYVRDGSVTKMIIFEVTDHSGKIECALFGEYVAL 186
Query: 354 WNDLATNIGQELLDMADKSPVVAIKALRVGDFQG-VSLSTISKSLVLI-NPDIPEAKRLK 411
WN + G E L PVV ++ +V F+ +L + + LI NPD+PE K
Sbjct: 187 WNGFVSK-GFEGL------PVVVVQFAKVKIFRDKATLQNVKGTTRLIVNPDVPEVIAFK 239
Query: 412 CWYDAEGKDAP--LASVGSGSSATSPNGARSVYADRVPLSHITTNTSLGQDKPVFFSVRG 469
G P L +G S + +Y + T + ++ FF V
Sbjct: 240 DRLIGLGIQVPPTLTVLGGPSKPSMEEEFLRMYPKK------TISQLFNSEEDGFFVVSA 293
Query: 470 HIRFIKPDQTMTYRACKNSNKKVTESFGAGYWCEACQKNDEQCSLRYIMVVKVSDASGEA 529
+ + Y ACK ++ VT GA Y+C+ C K+ Q RY + ++V D +G++
Sbjct: 294 IVSGFVEGEEWWYPACK-CHRSVTADSGA-YYCKGCDKHVIQMVPRYKIKLRVDDGTGDS 351
Query: 530 YISVFNDEAEKIV 542
+F+ + ++
Sbjct: 352 VFVLFDSDVHYLL 364
>Medtr8g076570.1 | FHA domain protein | HC | chr8:32446773-32439587
| 20130731
Length = 810
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 22/285 (7%)
Query: 287 VPETKFNFVQIDQLGPFVNKNE-LVDVVGVVQNVSASTSIRRKINNETIPKRDITIADET 345
+P +F F ++G V K++ L +++GV+ + +T I + P +I + DE+
Sbjct: 113 IPSHEFRFKSFKEIGEGVFKDDVLYEIIGVIHEIGKTTVI----GDGKKPCTNIVLRDES 168
Query: 346 KKTVVVSLWNDLATNIGQELLDMADKSPVVAI---KALRVGDFQGVSL-STISKSLVLIN 401
V V LW+ + + L + D+ V+ I ++ D +L + S S +LIN
Sbjct: 169 GNLVDVILWDKYSVQLMTFLAERKDRGSVILILTHAQCKLADNGKPNLCNNWSVSKLLIN 228
Query: 402 PDIPEAKRLKCWYDAEGK--DAPLASVGSGSSATSPNGARSVYADRVPLSHITTNTSLGQ 459
P + + A+G D L V S S R Y + LS + +
Sbjct: 229 LKHPVVEAFRASLQAQGHRFDQSLCQVSSSSQ-------RVNYDEFSNLSGVKSIAEFRD 281
Query: 460 -DKPVF-FSVRGHIRFIKPDQTMTYRACKNSNKKVTESFGAGYWCEACQKNDEQCSLRYI 517
DK + +V ++F Y C K + S GA Y C +C + E RY
Sbjct: 282 FDKDTYCITVAKSLKFNPNRYGWYYETCTKCTK-ASRSGGASYKC-SCGEEVEVPLTRYK 339
Query: 518 MVVKVSDASGEAYISVFNDEAEKIVGCSADELDNLKQQEGEDNPY 562
+VV + +A ++ E +I+G +AD L QQ GED+P+
Sbjct: 340 VVVIMEYRDHKAEFLFWDKECFQILGVAADTLRKTMQQVGEDDPH 384
>Medtr0030s0160.1 | hypothetical protein | LC |
scaffold0030:58676-58173 | 20130731
Length = 136
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 180 LNPYQANW-----TIKVSVTSKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAAR 234
++P W +KV V + + YKN+R EG + L DEEGT++QAT+ N +
Sbjct: 34 IHPDTTQWRLKRNKLKVLVIQRDLIIPYKNSRNEGTFLTIILLDEEGTKVQATLLNKHKK 93
Query: 235 KFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTL 271
D K YYISKG L N + +V + E++
Sbjct: 94 TCKDALKKNKSYYISKGLLDHVNPNYSSVHKEVELSF 130
>Medtr2g048560.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:21416239-21412307 | 20130731
Length = 549
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 114/473 (24%), Positives = 196/473 (41%), Gaps = 60/473 (12%)
Query: 170 MTRRVRPLVSLNPYQANWTIKVSVTSKGNMRTYKNARGEGCVFNVE--LTDEEGTQIQAT 227
M ++ + ++P + NW I+V V +R K + +++E L D +G +I A+
Sbjct: 1 MAPKIDLISDISPSKENWNIRVRVVRLWFVRDMKK---DQLPYSLEMVLMDNKGDRINAS 57
Query: 228 MFNDAARKFYDKFVLGKVYYISKGTLKVANK--QFKTVQNDYEMTLXXXXXXXXXXXXXX 285
+ K+ + +V+ I G VA+ ++T ++ Y++
Sbjct: 58 VRRTLIYKYEKELREDRVFSI--GNFSVASNVGSYRTARHPYKINFQYGTKIKQCDDK-- 113
Query: 286 FVPETKFNFVQIDQLGPF---VNKNELVDVVGVVQNVSASTSIRRK-INNETIPKRDITI 341
FVP + V D F + + L+DV+G+++ V S R ++ IP
Sbjct: 114 FVPADIY--VIGDSREIFQSEYDTDYLIDVMGMLKAVGVEKSYTRNGSQSKMIPIE---- 167
Query: 342 ADETKKTVVVSLWNDLATNIGQELLDMADKSPVVAIKALRVGDFQGVSL--STISKSLVL 399
D V+L+ + L ++ VVA+ ++ FQG + +TI+ + VL
Sbjct: 168 LDYDGFRFKVTLFGPYVDELNAFLASGETENVVVAVLLTKIKIFQGQATIQNTINATKVL 227
Query: 400 INPDIPEAKRLKCWYDAEGKDAPLASVGSGSSATSPNGARSVYADRVPLSHITTNTSL-- 457
NP A LK E D+P G S + SV D + LS +TT L
Sbjct: 228 FNPTFTAALLLKKRM-VENDDSP----SPGISKITEASKVSVEEDFLNLSPMTTVEGLKD 282
Query: 458 -GQDKPVFFSVRGHIRFIKPDQTMTYRACKNSNKKVTESFGAGYWCEACQKNDEQCSLRY 516
++K F+V G + I D Y +C NKKV Y+C C K+ + RY
Sbjct: 283 CAEEK--CFAVFGTVNVIVDDSDWWYTSCVVCNKKVYPD-EKMYFCSKCNKHVLNVTPRY 339
Query: 517 IMVVKVSDASGEAYISVFN-DEAEKIVGCSADELDNLKQQEGEDNPYQLKLKQATWVP-- 573
++ ++V D + A +F+ D AE AD +++ G D A+ VP
Sbjct: 340 MIKMRVVDHTDSATFVLFDRDAAELFKKTCADMIESCGM--GTD---------ASEVPKD 388
Query: 574 --------HLFRVSV---SQNEYNNEKR-QRITARAVVPVDFAAESRLLLEEI 614
+LF+V S Y R +R+TA V+ F + + L++ +
Sbjct: 389 ILAMVEKSYLFKVETNLGSSTMYEKSYRVKRVTADPVLVEKFQTKYKDLMKNV 441
>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:33436158-33438920 | 20130731
Length = 517
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 148/362 (40%), Gaps = 27/362 (7%)
Query: 216 LTDEEGTQIQATMFNDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLXXXX 275
L DE GT+I A++ F K GKVY +S ++ + ++T + Y++
Sbjct: 46 LIDEMGTKIHASVRKQLFYVFQSKLSEGKVYEMSCFSVAPSVGSYRTTLHPYKIVFQMTT 105
Query: 276 XXXXXXXXXXFVPETKFNFVQIDQLGPFVNKNE-LVDVVGVVQNVSASTSIRRKINNETI 334
+P + +I + + ++ LVDV+G + +S R + + +
Sbjct: 106 KVQACEGAS--IPSLGISLCKIADVCQHTSDHDYLVDVLGFMTGISVE---REYVRDGKV 160
Query: 335 PKRDITIADETKKTVVVSLWNDLATNIGQELLDMADKSPVVAIKALRVGDFQG-VSLSTI 393
K I + +L+ + + + P++ ++ +V F+ SL +
Sbjct: 161 TKMVIFEITDASGKCECALFGQYVDTLNKLMGKSGGGMPIILVQFAKVKIFRDKASLQNV 220
Query: 394 -SKSLVLINPDIPEAKRLKCWYDAEGKDAPLASVGSGSSATSPN-GARSVYADRVPLSHI 451
+ + +LINP I +A +++ + GS ++ P GARS +
Sbjct: 221 MNTTRILINPPIEQADQIR----------KSVTFGSMDVSSVPRIGARSKVSLEEDFLRT 270
Query: 452 TTNTSLGQDKPVF----FSVRGHIRFIKPDQTMTYRACKNSNKKVTESFGAGYWCEACQK 507
+L Q F F V I + + Y ACK ++ V+ GA ++C+ C K
Sbjct: 271 FPKKTLEQLHSTFEDGVFVVYATIGGLVDHEDWWYPACK-CHRSVSADSGA-FYCKGCAK 328
Query: 508 NDEQCSLRYIMVVKVSDASGEAYISVFNDEAEKIVGCSADELDNLKQQE--GEDNPYQLK 565
+ Q R+ + V VSDA+ VF+ + + ++ L ++ + E G P K
Sbjct: 329 HVFQMVPRFRVKVNVSDATNVGVFVVFDGDMQNLLNTPCSSLVSVAKAENAGHYPPEFEK 388
Query: 566 LK 567
LK
Sbjct: 389 LK 390
>Medtr1g105785.1 | replication factor-A carboxy-terminal domain
protein | HC | chr1:47732917-47735741 | 20130731
Length = 566
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 90/443 (20%), Positives = 173/443 (39%), Gaps = 23/443 (5%)
Query: 170 MTRRVRPLVSLNPYQANWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMF 229
M + P+ ++ + N ++V V + + N + + + L D+ G +IQA+
Sbjct: 1 MAPLITPVAAIVAGKINIKLRVRVVHVWTVSEFNNPNEDNSIHMLLLDDKLG-KIQASAK 59
Query: 230 NDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLXXXXXXXXXXXXXXFVPE 289
+ G Y I + + +++ Q+ +++ L +P
Sbjct: 60 KHLVPRIRSNVEEGSTYDIENVLVTKNDPKYQVTQHRFKLNLIDNTKFFKIDAAT--IPL 117
Query: 290 TKFNFVQIDQLGPFVNKNELVDVVGVVQNVSASTSIRRKINNETIPKRDITIADETKKTV 349
F+F+ +++ + ++VDV+G Q V R +N D+T+ D + V
Sbjct: 118 NHFDFMPFNEILEAEREEKVVDVIG--QVVERDELKERDVNGRRSKIMDLTLQDSESRRV 175
Query: 350 VVSLWNDLATNIGQELLDMADKSPV-VAIKALRVGDFQGVS--LSTISKSLVLINPDIPE 406
+LW + A + L SPV V I+ ++ +QG+ + + +L+ D+PE
Sbjct: 176 HCTLWANYAERMNSFLAAHDPSSPVIVLIQQCKLKKYQGIMGVSNAFFGTKLLLEGDLPE 235
Query: 407 AKRLKCWYDAEGKDAPLA-SVGSGSSATSPNGARSVYADRVPLSHITTNTSLGQDKPVFF 465
A K D G D ++ S+ +++T S+ D + +T + +
Sbjct: 236 AIEFKSKID--GGDVQVSQSISQNTTST----VVSLVDDMLQTKRMTIEDLIEATEQCQG 289
Query: 466 SVRGHIRFIKPDQTMTYRACKNSNKKVTESFGAGYWCEACQKNDEQCSLRYIMVVKVSDA 525
V I I+ + + Y+AC +V G Y C C R+ + V+V D
Sbjct: 290 IVLATICGIESEYSWYYQACTKCAGRVRTVAGRLY-CGKCNTG-RNAVPRFKLHVQVMDN 347
Query: 526 SGEAYISVFNDEAEKIVGCSADELDNLKQQEGEDNPYQLKLKQATWVPHLFRVSVSQ--- 582
+G +F+ V + ++ + Q + Y L LF+V VS
Sbjct: 348 TGSTSFILFDRNVSSYVNRTVQDM--IDAQPNNSSDYPSDLDSFVGKRMLFKVEVSDGNL 405
Query: 583 -NEYNNEKRQRITARAVVPVDFA 604
+ + N +R TA V FA
Sbjct: 406 LHNWRNYAVKRTTAEEDVINQFA 428