Miyakogusa Predicted Gene

Lj4g3v1719740.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1719740.1 Non Characterized Hit- tr|J3NEE5|J3NEE5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB12G2,31.42,5e-18,seg,NULL; coiled-coil,NULL,CUFF.49624.1
         (539 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g025870.1 | hypothetical protein | HC | chr3:7888175-78934...   353   3e-97

>Medtr3g025870.1 | hypothetical protein | HC | chr3:7888175-7893471
           | 20130731
          Length = 665

 Score =  353 bits (905), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 236/529 (44%), Positives = 304/529 (57%), Gaps = 70/529 (13%)

Query: 31  NGDSSSQLYS---NFDNPDF---PLHTIT-------SKEVSLDRRALD-----VDSVDGL 72
           NGD+S  L S   NF+  +    PL ++         K+V LDRR  D     V S DG 
Sbjct: 25  NGDTSYHLSSEDSNFEKAESFSSPLTSLKQRRRRERGKDVFLDRRGSDEMFSDVSSFDGP 84

Query: 73  LATELASIEGFDSEKVRCFRDCNESNVLSVSN-----------FSDVEDRNDRSSNIGAN 121
              ++AS  GF+ EK+R F++ NES+ LS+SN           F D ED N+++++   N
Sbjct: 85  STGDVASYRGFNCEKIRHFQNYNESDFLSISNLAVPLSPYDDNFKDGEDGNEQNTSSFGN 144

Query: 122 CGFLLPDLSVGELGSFVHNP-GNKTFFKTEHWYGQXXXXXXXXXXXXXXXXXRPLNSLES 180
            GF  P+ S    G  +HN  G+KTF  T+ +                    RPLNSLES
Sbjct: 145 HGFFRPEFSAK--GIPIHNSFGHKTFLSTKRF---------------PEHVSRPLNSLES 187

Query: 181 CLMAQLCKAHAKMEQGV---SSSSSAVTKLFHVIDGSQIISRKDDDDDSCSALIGSEEYK 237
           C MAQL K HAKME+ V    SS S  T+LF V +GS+I++R  + D   SAL G     
Sbjct: 188 CFMAQLYKEHAKMEEYVFSPLSSPSTTTRLFRVSNGSRILNR--ESDILISALTG----- 240

Query: 238 LRGEADQVKDENELLGVPASPKVESINDAKKMKSDAGIEKSGILSSSNIAFTEKHIHSQH 297
            R +A + KD+N + G+P  PK+ S+ND KKMK DA   +S   S S+  F+ K   +Q+
Sbjct: 241 -RNKAGREKDKNVVGGIPCLPKIGSLNDTKKMKLDAVDGRSRRSSFSDDLFSGKL--TQY 297

Query: 298 DAIFLFSLGISFGIITSILANNREKDKLRELLKQTEILAQDLQEELEMKDSMTVKELQSE 357
           D  FLFSLGIS GIITS + N RE  K+RELLKQ E L QDLQ+EL+MKDSMTVKELQ+E
Sbjct: 298 DPTFLFSLGISLGIITSNMTNKREIVKIRELLKQNENLVQDLQDELDMKDSMTVKELQNE 357

Query: 358 NYGSQDTCDYSFRDKELSGFFPEKHTDNSSIIDCKKFYDQKXXXXXXXXXXXXXXXXXXX 417
           NYGSQDTCD+SF  KEL  F PEKH D+S  ++ K+ YD+K                   
Sbjct: 358 NYGSQDTCDHSFNGKELHEFSPEKHIDSSPRVERKESYDKKEEQSSESMSKIEAELEAEL 417

Query: 418 XRLGFKMNXXXXXXXXXXXAE-DTDFVADFSQNELPTDMISGNDFVHPKLNEDANNTKSF 476
            RLG  MN            E D +FVADF+Q E   D ++G          DAN T   
Sbjct: 418 ERLGLDMNASSLDRKLSELVEIDPEFVADFAQGEFRADTVNG---------ADANVTTPL 468

Query: 477 PVNYAVSPHELSLRLHEVIQSRLEKRVQELEVALQYSQRKLQFVESEHE 525
           P NYAVSPHELSLRLHEVIQ++LE RV+ELE+AL+ SQ K++ +E+E +
Sbjct: 469 PANYAVSPHELSLRLHEVIQNQLETRVKELEIALENSQMKVRSLETEQD 517