Miyakogusa Predicted Gene

Lj4g3v1683310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1683310.1 tr|A9THB8|A9THB8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_170090,62.9,0.000000003,coiled-coil,NULL;
seg,NULL,CUFF.49597.1
         (374 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g109330.1 | myosin heavy chain-like protein | HC | chr4:45...   346   3e-95

>Medtr4g109330.1 | myosin heavy chain-like protein | HC |
           chr4:45398756-45396831 | 20130731
          Length = 319

 Score =  346 bits (887), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 190/318 (59%), Positives = 230/318 (72%), Gaps = 12/318 (3%)

Query: 62  DDKKHIQRLEKELLNCFQEIDFLQDRLNVRN------------LELKLEEMGDLQEEVFS 109
           +DKK+IQ LEKELLNC QEID+LQD+L+ +N            LELK +E  DL+++VFS
Sbjct: 2   EDKKYIQNLEKELLNCSQEIDYLQDQLSTKNTEVNYLEERVRVLELKFKETEDLRKQVFS 61

Query: 110 LREELRRSNSKQFSLTQELETKEIELEQSAFSIEKLEGSFSSIALESQFEVESMKLDMMA 169
           LREEL+ SNS+QF+L QELETKE+ELEQS  SIE+L+ SFSS+ALESQFEVESMKL+MMA
Sbjct: 62  LREELKISNSEQFTLIQELETKEVELEQSGLSIERLDESFSSMALESQFEVESMKLEMMA 121

Query: 170 LEQSLFEAKKTQDEALEESNRLSRLIDELQYALQDTQQTITSXXXXXXXXXXKLDAANMN 229
           LEQ+LFEAKK QDE LEE++R+SRLIDELQ ALQD  +TI S          KLD ANM+
Sbjct: 122 LEQNLFEAKKIQDETLEENSRMSRLIDELQDALQDAHKTIISLNEENKIIKEKLDTANMS 181

Query: 230 TRLFSRKVGDWLENKNRSHLKRKPSLSEQESKPEDIRTCGEVLGPLLGSLAMFLGPAADL 289
           + LFS+KV +WLENK+R  +K +  +S++ SK  D R  GE+LGPLLG LAM L PA++L
Sbjct: 182 SILFSQKVEEWLENKDRPQIKDQFPVSKERSKAYDTRIYGEILGPLLGILAMKLDPASEL 241

Query: 290 KGKMEMPHQIQXXXXXXXXXXXXXXXXXXXXXXXXXXXVQEMAELRYQFTGLLEEECKRR 349
           KGK+EM  QIQ                           VQEMAELRYQ TGLLEEE KRR
Sbjct: 242 KGKIEMSCQIQEYEFLVEKLKEELRVEKLRAKEEAEDLVQEMAELRYQLTGLLEEERKRR 301

Query: 350 ACIEHASLQRISELEAQL 367
           ACIEH SLQRI+ELEA++
Sbjct: 302 ACIEHVSLQRIAELEARV 319