Miyakogusa Predicted Gene

Lj4g3v1683110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1683110.1 tr|B9N4D1|B9N4D1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_784467 PE=4
SV=1,50.5,0.000000000000009,seg,NULL; DUF827,Protein of unknown
function DUF827, plant; coiled-coil,NULL,CUFF.49576.1
         (457 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g109150.1 | WEAK movement UNDER BLUE LIGHT-like protein | ...   455   e-128

>Medtr4g109150.1 | WEAK movement UNDER BLUE LIGHT-like protein | HC
           | chr4:45283948-45285675 | 20130731
          Length = 493

 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 268/495 (54%), Positives = 328/495 (66%), Gaps = 40/495 (8%)

Query: 1   MGSEIDTKSIEPVRSTAVSLFGDKGDHKRYHSTRTKNDCXXXXXXXXXXXANCKVQLEAK 60
           M  EIDT  IEPVR   VSLF DKGD+K++   R K D            A+ KVQLEAK
Sbjct: 1   MVGEIDTTPIEPVRH-GVSLFDDKGDNKKF-LPRNKRDYEKEIEDLTTELASYKVQLEAK 58

Query: 61  QSAHMQTLLKQEHNQKMIQELSILLKKSDIERNKYMNECSEGR-TYKDELESKKKKIADL 119
             AH++ LLK E NQKMIQELS LLK SDIERNKY+NE SEGR + KDELES  K++ADL
Sbjct: 59  HVAHIKALLKPEQNQKMIQELSTLLKNSDIERNKYVNEHSEGRASSKDELESMMKEMADL 118

Query: 120 HLETAMFQDQLSHVLSELKATQRELLKKDTEIVAARDSXXXXXXXXXXXXXXXXXXXXXX 179
            LET   +DQLSHVLSELK+TQRELL KDT+I AARDS                      
Sbjct: 119 RLETVKVRDQLSHVLSELKSTQRELLNKDTDIFAARDSELNAVTKAEQLENELKMEKEQK 178

Query: 180 XXXXXXXXXXNEVIHRSKLAAIVNEEEMFAIVSERDQKIESATKATAQLQQQVEDMKEHI 239
                     NE +HRSKLAAI  E++   ++ ++D++I+ ATK   Q QQ++ DM+++I
Sbjct: 179 EELLHQVNELNERVHRSKLAAIKVEKQNIGMLYQKDEEIQLATKDNDQAQQEIVDMRKNI 238

Query: 240 KML------KQDNEALFSTKVSGSNSINNLNIDMELKERQIMEQSVYIEKLEMELNQLKK 293
            ML      +  +E L  ++ S SN+I +L  D+E KER IM+QS  I++LEMELNQLK 
Sbjct: 239 DMLHGLQNKQMVDETLTLSEDSPSNAIKDLYNDIEQKERYIMDQSSCIDRLEMELNQLKN 298

Query: 294 ELSSAKEEMNGLNISNESFTSEL-------KAINGRDVGAQVEIALLKSQLQEQRFAYKN 346
           EL+SAKEE+N LNI+NES TSEL       K    RD+ AQVEIALLKS LQE R AYK+
Sbjct: 299 ELTSAKEEINELNINNESLTSELHRTKEELKTNKERDIDAQVEIALLKSHLQEYRLAYKD 358

Query: 347 GC------------DDDI------------QTEKAIQVENQFEISFMKKELENASAKIAE 382
           G             +D I            + +K  +  NQ E++ MKKELENAS KI+E
Sbjct: 359 GYITDHSKGEAEENNDSITISLEDYNYMIKEVQKGNKKGNQIELALMKKELENASLKISE 418

Query: 383 FRARAEQAISRAELAENGKAALEERIRRHKENRLRRKAALSALKEESTPKPFSPSTSYGT 442
            R RAEQAISRAELAENGKAALE++IRRH+E+RLR+KAAL+AL+EESTPKPF+PSTSYGT
Sbjct: 419 MRTRAEQAISRAELAENGKAALEDKIRRHREHRLRKKAALTALREESTPKPFTPSTSYGT 478

Query: 443 PGSYQPLGKVLNMRL 457
           P  YQPL KVLN++L
Sbjct: 479 PSMYQPLSKVLNIKL 493