Miyakogusa Predicted Gene

Lj4g3v1660960.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1660960.2 tr|Q3EAN6|Q3EAN6_ARATH HNH endonuclease
OS=Arabidopsis thaliana GN=At3g47490 PE=4
SV=1,55.22,0.00000000000003,HNH,HNH endonuclease,CUFF.49560.2
         (163 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g109110.1 | HNH endonuclease domain protein | HC | chr4:45...   293   7e-80
Medtr4g109110.2 | HNH endonuclease domain protein | HC | chr4:45...   160   6e-40
Medtr4g108710.1 | HNH endonuclease domain protein | HC | chr4:45...   134   4e-32

>Medtr4g109110.1 | HNH endonuclease domain protein | HC |
           chr4:45273337-45267632 | 20130731
          Length = 165

 Score =  293 bits (749), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 136/165 (82%), Positives = 153/165 (92%), Gaps = 2/165 (1%)

Query: 1   MSSSPHRPRGDGN--GENRPRSFDSKTKTICWTKADVVPGRHPDRWRKDAAGNIVCKRFF 58
           M+SSPHR  G+G+  G+ RPR FD+KTK ICWTKAD VPGRHP+RWRKDAAGNIVCKRFF
Sbjct: 1   MASSPHRSGGEGDSKGDKRPRFFDTKTKNICWTKADTVPGRHPERWRKDAAGNIVCKRFF 60

Query: 59  NCLGCLCYEYDHIVPFSKGGESTAENCQILQSRVNRFKSDKSQIDSEELKGYSCDVNFTD 118
           NCLGCLCYEYDHI+P+SKGGESTA+NCQILQSRVNR KSDKSQIDS++L+GYSCD+NFTD
Sbjct: 61  NCLGCLCYEYDHIIPYSKGGESTADNCQILQSRVNRLKSDKSQIDSDKLRGYSCDINFTD 120

Query: 119 KELDVIEMAVYGDVIRPGNQCRCRTVAEMLGKYKLKDKTDACKLP 163
           KELD+IEMAVYGDVIRPGNQCRCRTV E+LGK+K KD T+ACKLP
Sbjct: 121 KELDIIEMAVYGDVIRPGNQCRCRTVDEVLGKFKAKDDTNACKLP 165


>Medtr4g109110.2 | HNH endonuclease domain protein | HC |
           chr4:45272356-45267632 | 20130731
          Length = 162

 Score =  160 bits (405), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 74/87 (85%), Positives = 83/87 (95%)

Query: 77  GGESTAENCQILQSRVNRFKSDKSQIDSEELKGYSCDVNFTDKELDVIEMAVYGDVIRPG 136
           GGESTA+NCQILQSRVNR KSDKSQIDS++L+GYSCD+NFTDKELD+IEMAVYGDVIRPG
Sbjct: 76  GGESTADNCQILQSRVNRLKSDKSQIDSDKLRGYSCDINFTDKELDIIEMAVYGDVIRPG 135

Query: 137 NQCRCRTVAEMLGKYKLKDKTDACKLP 163
           NQCRCRTV E+LGK+K KD T+ACKLP
Sbjct: 136 NQCRCRTVDEVLGKFKAKDDTNACKLP 162


>Medtr4g108710.1 | HNH endonuclease domain protein | HC |
           chr4:45023961-45020110 | 20130731
          Length = 195

 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 59/125 (47%), Positives = 85/125 (68%)

Query: 18  PRSFDSKTKTICWTKADVVPGRHPDRWRKDAAGNIVCKRFFNCLGCLCYEYDHIVPFSKG 77
           PRSF    K  CW KAD V GR PDRWR+D  GN++ ++   C GCLC++YDHIVP+SKG
Sbjct: 69  PRSFPHSVKQKCWEKADKVKGRDPDRWRRDPLGNLIFRKLVGCPGCLCHDYDHIVPYSKG 128

Query: 78  GESTAENCQILQSRVNRFKSDKSQIDSEELKGYSCDVNFTDKELDVIEMAVYGDVIRPGN 137
           G+ST ENCQ+LQ+ VNR K +++ I   +L   S     +D+++D++E++ +G+V R  +
Sbjct: 129 GQSTLENCQVLQATVNRSKGNRTDISKSDLIQKSSYCRVSDRDMDLLELSAFGNVRRGQD 188

Query: 138 QCRCR 142
              CR
Sbjct: 189 TGGCR 193