Miyakogusa Predicted Gene

Lj4g3v1659940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1659940.1 Non Characterized Hit- tr|B6SKC3|B6SKC3_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,37.39,1e-17,seg,NULL,CUFF.49559.1
         (222 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g109020.1 | transmembrane protein, putative | HC | chr4:45...   160   6e-40
Medtr3g037110.1 | transmembrane protein, putative | HC | chr3:13...   138   5e-33

>Medtr4g109020.1 | transmembrane protein, putative | HC |
           chr4:45200284-45202032 | 20130731
          Length = 324

 Score =  160 bits (406), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 99/222 (44%), Positives = 109/222 (49%), Gaps = 3/222 (1%)

Query: 1   MEVSCKILRRSIHSFLQNYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIYNRFR 60
           MEVSCKILRRSIHSFLQNYH                                 QIYNR R
Sbjct: 1   MEVSCKILRRSIHSFLQNYHYFTSSIAFLVFPFSASILISQAFVPSPSSLLP-QIYNRLR 59

Query: 61  ILFDAAGFPSSSQLFTILNLKVSQXXXXXXXXXXXXXXXXXXXXXXXXXXXN-NHKTIFS 119
            LFDAAGFPS S LF ILNLKVSQ                             NH     
Sbjct: 60  TLFDAAGFPSYSLLFNILNLKVSQTITCSIFSLPFTLTVLLIAKASIIHALKLNHNKPSL 119

Query: 120 SPSLKSIISLYKPLLQTYVCSCFLIXXXXXXXXXXXXXXXXXIERLGXXXXXXXXXXXXX 179
            PS  SII+LYKPL  TY+C+CFLI                 +E LG             
Sbjct: 120 PPSFSSIIALYKPLFHTYICNCFLIISANATSFCIMFLAFSFVETLGYSSPSFLLFMSAT 179

Query: 180 XGAVLFSVILANALVICNMAMAISGVEGHGGYLAILKGCVFI 221
            GA+LFSVILANALVICNM++ +SG+EGHGGY AILK C+ I
Sbjct: 180 -GAILFSVILANALVICNMSLVLSGMEGHGGYSAILKACILI 220


>Medtr3g037110.1 | transmembrane protein, putative | HC |
           chr3:13581344-13579651 | 20130731
          Length = 324

 Score =  138 bits (347), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 99/219 (45%), Gaps = 7/219 (3%)

Query: 1   MEVSCKILRRSIHSFLQNYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIYNRFR 60
           MEVS KILRRSIHSFLQNY                                  QIYN  +
Sbjct: 1   MEVSYKILRRSIHSFLQNYQYFTITISILAFPFSASILLSQALVPFSSSLFP-QIYNHLK 59

Query: 61  ILFDAAGFPSSSQLFTILNLKVSQXXXXXXXXXXXXXXXXXXXXXXXXXXXNNHKTIFSS 120
            LFDAAGFPSSSQLFT+LNLKVSQ                           N +K  F  
Sbjct: 60  TLFDAAGFPSSSQLFTVLNLKVSQTITSSIFTLPFTLTFFLIAKAFIIQALNKNKENFQP 119

Query: 121 PSLKSIISLYKPLLQTYVCSCFLIXXXXXXXXXXXXXXXXXIERLGXXXXXXXXXXXXXX 180
            S       YKP+L TY+ +   I                  E LG              
Sbjct: 120 SSYN-----YKPILHTYIYNTLFILSANATTFCFLFLAFSFTEGLGNSSSSFTVFLSAA- 173

Query: 181 GAVLFSVILANALVICNMAMAISGVEGHGGYLAILKGCV 219
            AVLFSVILANALVICNMA+ +SGVEGHGGY+ ILK CV
Sbjct: 174 AAVLFSVILANALVICNMALTLSGVEGHGGYMTILKACV 212