Miyakogusa Predicted Gene

Lj4g3v1658930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1658930.1 Non Characterized Hit- tr|C6TNL6|C6TNL6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.39700
PE,38.46,0.0003,seg,NULL,CUFF.49557.1
         (117 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g108990.4 | transmembrane protein, putative | HC | chr4:45...    73   6e-14
Medtr4g108990.3 | transmembrane protein, putative | HC | chr4:45...    73   6e-14
Medtr4g108990.1 | transmembrane protein, putative | HC | chr4:45...    73   7e-14
Medtr4g108990.2 | transmembrane protein, putative | HC | chr4:45...    72   8e-14

>Medtr4g108990.4 | transmembrane protein, putative | HC |
           chr4:45186279-45182873 | 20130731
          Length = 189

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 61/126 (48%), Gaps = 20/126 (15%)

Query: 3   PINLTQTTDIDSPMVIIHDIND-CAVFPPINHENLSNQDTPQXXXXXXXXXXXXXCLTTD 61
           P+N  Q    + PMVII D  D  ++FPPINHENL  Q                    +D
Sbjct: 9   PVNANQN---EFPMVIITDNKDEFSIFPPINHENL--QLLTNQQIPQSKSPPSPSFSPSD 63

Query: 62  SDTW---------VDPHVRKGGDFTGWVSFGFQFLRSKL----SSFWNRGAAFWLIGWLP 108
            D W          D  +RKG DF GW+S GFQ LRSKL    SSF NRG   W  G L 
Sbjct: 64  CDAWEECLSLSSPFDSSLRKGCDFIGWLSIGFQILRSKLVSAVSSFRNRGGTNWSFG-LR 122

Query: 109 AAAVVF 114
           AA VVF
Sbjct: 123 AATVVF 128


>Medtr4g108990.3 | transmembrane protein, putative | HC |
           chr4:45186283-45182873 | 20130731
          Length = 189

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 61/126 (48%), Gaps = 20/126 (15%)

Query: 3   PINLTQTTDIDSPMVIIHDIND-CAVFPPINHENLSNQDTPQXXXXXXXXXXXXXCLTTD 61
           P+N  Q    + PMVII D  D  ++FPPINHENL  Q                    +D
Sbjct: 9   PVNANQN---EFPMVIITDNKDEFSIFPPINHENL--QLLTNQQIPQSKSPPSPSFSPSD 63

Query: 62  SDTW---------VDPHVRKGGDFTGWVSFGFQFLRSKL----SSFWNRGAAFWLIGWLP 108
            D W          D  +RKG DF GW+S GFQ LRSKL    SSF NRG   W  G L 
Sbjct: 64  CDAWEECLSLSSPFDSSLRKGCDFIGWLSIGFQILRSKLVSAVSSFRNRGGTNWSFG-LR 122

Query: 109 AAAVVF 114
           AA VVF
Sbjct: 123 AATVVF 128


>Medtr4g108990.1 | transmembrane protein, putative | HC |
           chr4:45186279-45185770 | 20130731
          Length = 169

 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 61/126 (48%), Gaps = 20/126 (15%)

Query: 3   PINLTQTTDIDSPMVIIHDIND-CAVFPPINHENLSNQDTPQXXXXXXXXXXXXXCLTTD 61
           P+N  Q    + PMVII D  D  ++FPPINHENL  Q                    +D
Sbjct: 9   PVNANQN---EFPMVIITDNKDEFSIFPPINHENL--QLLTNQQIPQSKSPPSPSFSPSD 63

Query: 62  SDTW---------VDPHVRKGGDFTGWVSFGFQFLRSKL----SSFWNRGAAFWLIGWLP 108
            D W          D  +RKG DF GW+S GFQ LRSKL    SSF NRG   W  G L 
Sbjct: 64  CDAWEECLSLSSPFDSSLRKGCDFIGWLSIGFQILRSKLVSAVSSFRNRGGTNWSFG-LR 122

Query: 109 AAAVVF 114
           AA VVF
Sbjct: 123 AATVVF 128


>Medtr4g108990.2 | transmembrane protein, putative | HC |
           chr4:45186279-45182873 | 20130731
          Length = 162

 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 61/126 (48%), Gaps = 20/126 (15%)

Query: 3   PINLTQTTDIDSPMVIIHDIND-CAVFPPINHENLSNQDTPQXXXXXXXXXXXXXCLTTD 61
           P+N  Q    + PMVII D  D  ++FPPINHENL  Q                    +D
Sbjct: 9   PVNANQN---EFPMVIITDNKDEFSIFPPINHENL--QLLTNQQIPQSKSPPSPSFSPSD 63

Query: 62  SDTW---------VDPHVRKGGDFTGWVSFGFQFLRSKL----SSFWNRGAAFWLIGWLP 108
            D W          D  +RKG DF GW+S GFQ LRSKL    SSF NRG   W  G L 
Sbjct: 64  CDAWEECLSLSSPFDSSLRKGCDFIGWLSIGFQILRSKLVSAVSSFRNRGGTNWSFG-LR 122

Query: 109 AAAVVF 114
           AA VVF
Sbjct: 123 AATVVF 128