Miyakogusa Predicted Gene

Lj4g3v1658750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1658750.1 Non Characterized Hit- tr|B1PIE4|B1PIE4_9CONI
Putative exonuclease family protein (Fragment)
OS=Cupr,43.69,7e-17,Ribonuclease H-like,Ribonuclease H-like domain; no
description,Exonuclease; SUBFAMILY NOT NAMED,NULL,CUFF.49553.1
         (465 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g108870.1 | ribonuclease H superfamily polynucleotidyl tra...   738   0.0  
Medtr8g091290.1 | ribonuclease H superfamily polynucleotidyl tra...   274   2e-73

>Medtr4g108870.1 | ribonuclease H superfamily polynucleotidyl
           transferase | HC | chr4:45122732-45125978 | 20130731
          Length = 492

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/490 (74%), Positives = 400/490 (81%), Gaps = 27/490 (5%)

Query: 1   MGSLA-AEDRSEIAFFDLETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPADL 59
           MGSL  ++DRSEI FFD+ETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRP++L
Sbjct: 1   MGSLPLSDDRSEIVFFDVETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPSEL 60

Query: 60  SLISPLSERCNGITPDAVSSAPTFADIADTVYDLLHGRIWAGHNIIRFDCVRLRDAFAAI 119
           SLI+PLSERCNGI  +AVS+APTF DIA +VYDLLHGRIWAGHNIIRFDCVR+RDAFAAI
Sbjct: 61  SLITPLSERCNGINAEAVSNAPTFVDIAHSVYDLLHGRIWAGHNIIRFDCVRIRDAFAAI 120

Query: 120 NQPPPEPKGTIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYC 179
            QPPPEPKG IDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYC
Sbjct: 121 KQPPPEPKGLIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYC 180

Query: 180 ATVLFLESSLPDIFTENSWVSPNATTRSRSNGKSPSEGGLLNINKDT------------- 226
           ATVLFLESSLPDIFTEN WVSPNA TRSRSNGKS  EGGLL  + +T             
Sbjct: 181 ATVLFLESSLPDIFTENCWVSPNAVTRSRSNGKSRPEGGLLVSSPETETQDKNHPILSLA 240

Query: 227 -------------VFNMLELKDRLNGESIQTDVAMDEKLLQDLPDTXXXXXXXXXXXXXX 273
                         F+  EL++ +N ESI+TDVAMD+K +Q  P +              
Sbjct: 241 TSSTEIAVSNAADTFSFRELQNEINRESIRTDVAMDDKSIQYSPGSAASSSVHQAGSSSI 300

Query: 274 XVLELDEISIPAIDASLVPSFLGSQRIELHHNGFSFQLHCTGLKVRFGISTKFVDSAGRP 333
            VLE D +SI +IDASLVPS+ GSQRIELHH GF FQLHC+GLKVRFGI+TKFVDSAGRP
Sbjct: 301 AVLEPDFLSISSIDASLVPSYYGSQRIELHHEGFPFQLHCSGLKVRFGINTKFVDSAGRP 360

Query: 334 RLNFVVDASPSLCDVLDACDRVAQKLXXXXXXXXXWRPVVIRKEGFFNYPTIRLHIPTAV 393
           RLNFVVD SPSLC+VLDACD VA+KL         WRPVVIRKEGFFNYPTIRLHIPTAV
Sbjct: 361 RLNFVVDPSPSLCNVLDACDNVARKLSSESGSSSDWRPVVIRKEGFFNYPTIRLHIPTAV 420

Query: 394 FENVALYATEIYQRETSGTVQRLLFSKFDAAELGSMFMPGTFVDAFFSLDLYDYQQSAGI 453
            E +A+YATEIYQ+E+SG+VQRLLFSKFDAAEL S+F PGTFVDA FSLDLYDY Q+AGI
Sbjct: 421 CEEIAIYATEIYQKESSGSVQRLLFSKFDAAELDSLFKPGTFVDAAFSLDLYDYHQNAGI 480

Query: 454 KLVAKKLIIH 463
           KLVAKKL IH
Sbjct: 481 KLVAKKLTIH 490


>Medtr8g091290.1 | ribonuclease H superfamily polynucleotidyl
           transferase | HC | chr8:38101660-38099823 | 20130731
          Length = 281

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 164/207 (79%), Gaps = 3/207 (1%)

Query: 11  EIAFFDLETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPADLSLISPLSERCN 70
           EI FFDLET VP + GQ F +LEFGAI+V   KL+E+ +Y+TL+RP DLS+    S R +
Sbjct: 16  EIVFFDLETNVPKKIGQRFWVLEFGAIVVSAHKLSEIESYTTLIRPEDLSVAPMKSSRSD 75

Query: 71  GITPDAVSSAPTFADIADTVYDLLHGRIWAGHNIIRFDCVRLRDAFAAINQPPPEPKGTI 130
           GIT +AV +AP F D+A+ ++ +L+GR+WAGHNI RFDCVR+++AF  IN+P P P G I
Sbjct: 76  GITREAVKNAPCFEDVAEKIFSILNGRVWAGHNIQRFDCVRIKEAFDGINRPAPVPVGII 135

Query: 131 DSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLP 190
           DSL +LT+KFGRRAGNMKMATLA+YFGLGQQ HRSLDDVRMNLEV+K+CATVLFLES+LP
Sbjct: 136 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVVKHCATVLFLESTLP 195

Query: 191 DIFT--ENSWV-SPNATTRSRSNGKSP 214
           +     ++ W  S +  TRSR+NGKSP
Sbjct: 196 NTLHIDKSKWYGSSSIMTRSRTNGKSP 222