Miyakogusa Predicted Gene

Lj4g3v1635280.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1635280.1 Non Characterized Hit- tr|I1JZP4|I1JZP4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.842 PE=4,71.64,9e-18,no
description,Copper amine oxidase, N2/N3-terminal; DUF3223,Protein of
unknown function DUF3223; se,CUFF.49520.1
         (213 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g435580.1 | DUF3223 family protein | HC | chr3:11684483-11...   194   6e-50
Medtr0140s0050.1 | DUF3223 family protein | HC | scaffold0140:18...   182   2e-46
Medtr2g094530.1 | hypothetical protein | HC | chr2:40320609-4032...    83   2e-16
Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076...    55   6e-08

>Medtr3g435580.1 | DUF3223 family protein | HC |
           chr3:11684483-11682018 | 20130731
          Length = 235

 Score =  194 bits (493), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 128/209 (61%), Gaps = 35/209 (16%)

Query: 1   MAETATPEPVTVEQTTGPAAAVDMVVENAVLAGVDSAANGESNLKRPREDE-----EEEG 55
           MAE   PE V        A  VDM VEN            ES  KR RE+E     +++ 
Sbjct: 1   MAEETAPEIVDPNTAAAAATTVDMEVENV----------SESKEKRTREEEGEEEPKDDV 50

Query: 56  VSKMPKVGEE--------------------EKKPSGPVKLGPKSFDSSREMFDYFYNFLH 95
           VSK  KV EE                    EK+ SG VKLGPK+F SS +MF YF+ FLH
Sbjct: 51  VSKKAKVDEEKSVEEERLEKLEKNEGDVKDEKEASGDVKLGPKTFGSSLDMFHYFHKFLH 110

Query: 96  VWPPNVNLNKYEHMVLLELLKNGHTEPDEKIGGGILAFQVRKHPMWKSRCFFLIREDESI 155
            WP N+N+NKYEH +LLELLKNGH EPD KIG GI AFQVR HP + SRC+FLIRED++ 
Sbjct: 111 AWPQNLNVNKYEHTMLLELLKNGHAEPDRKIGVGICAFQVRDHPRYNSRCYFLIREDDTA 170

Query: 156 DDFSFRKCVDHILPLPEEMQLKPDVNRAL 184
           DDFSFRKCVDHI PLPEEMQLK + N+  
Sbjct: 171 DDFSFRKCVDHISPLPEEMQLKSEGNKKF 199


>Medtr0140s0050.1 | DUF3223 family protein | HC |
           scaffold0140:18469-20374 | 20130731
          Length = 195

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/196 (55%), Positives = 122/196 (62%), Gaps = 41/196 (20%)

Query: 1   MAETATPEPVTVEQTTGPAAAVDMVVENAVLA---GVDSAANGESNLKRPREDEEEEGVS 57
           M ETA PEP  VE  +    AVDMV+ENA LA    +DS AN ESN KR R+D+E+  V+
Sbjct: 1   MTETAAPEPQIVE--SNATVAVDMVIENAELAEVTAIDSEANDESNQKRARDDDEKR-VT 57

Query: 58  KMPKVGEEE---------KKPSGPVKLGPKSFDSSREMFDYFYNFLHVWPPNVNLNKYEH 108
           K  KV  E          KKPSGP             +FDYF +FLH W PN+N+NKYEH
Sbjct: 58  KKQKVEAEVEEDEEGEEEKKPSGP-------------LFDYFNSFLHAWGPNLNVNKYEH 104

Query: 109 MVLLELLKNGHTEPDEKIGGGILAFQVRKHPMWKSRCFFLIREDESIDDFSFRKCVDHIL 168
            +LLELL  GH EPD+KIGG I AFQVRK             EDES DDFSFRKCVDHIL
Sbjct: 105 TMLLELLMKGHPEPDQKIGGKIRAFQVRK-------------EDESADDFSFRKCVDHIL 151

Query: 169 PLPEEMQLKPDVNRAL 184
           PLPE MQ+K D NRAL
Sbjct: 152 PLPEAMQVKHDANRAL 167


>Medtr2g094530.1 | hypothetical protein | HC |
           chr2:40320609-40321084 | 20130731
          Length = 144

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 64  EEEKKPSGPVKLGPKSFDSSREMFDYFYNFLHVWPPNVNLNKYEHMVLLELLKNG 118
           +EEK+ SG V LGPK+F SS +MF YF+ FLH W  N+N+NKYEHM+LLELLKNG
Sbjct: 82  KEEKEASGGVNLGPKTFGSSLDMFYYFHKFLHAWLQNLNVNKYEHMMLLELLKNG 136


>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
            chr5:3060764-3075383 | 20130731
          Length = 1519

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 101  VNLNKYE---------HMVLLELLKNGHTEPDEKIGGGILAFQVRKHPMWK-SRCFFLIR 150
            V LNKY+          + ++++L + H   DEK G G    +V  HP +  SRCFF+IR
Sbjct: 1373 VILNKYQIDETLSETDKLTIMKVL-HFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIR 1431

Query: 151  EDESIDDFSFRKCVDHILPLPEEMQLKPDVNR 182
            +D S++DFS+RKC+   L + +  + K   NR
Sbjct: 1432 KDGSVEDFSYRKCILGALDIIDPKKSKIQRNR 1463