Miyakogusa Predicted Gene

Lj4g3v1635250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1635250.1 Non Characterized Hit- tr|A5APJ5|A5APJ5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,47.73,0.0000000000004, ,CUFF.49518.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g037730.1 | Clavata3/ESR (CLE) gene family member MtCLE11 ...   101   1e-22
Medtr5g040640.1 | Clavata3/ESR (CLE) gene family member MtCLE24 ...    60   5e-10

>Medtr3g037730.1 | Clavata3/ESR (CLE) gene family member MtCLE11 |
           HC | chr3:13874477-13873747 | 20130731
          Length = 83

 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 65/93 (69%), Gaps = 11/93 (11%)

Query: 21  MSHFNFRGFLVLVCVGILASQPYNVFGLRSQDLALRWEEGQLPFVRSFRVLKVVAMEDLK 80
           MS    RGF +LVCV +LASQPY   GLR++DL           V+   VLK  AME L+
Sbjct: 1   MSFLVLRGFFILVCVWMLASQPYIACGLRTKDL-----------VQISHVLKGDAMEGLE 49

Query: 81  SKMESAPAPSMTFDPNRSNKRTVRKGSDPIHNR 113
           SKM+ AP+PSMTFD N+SNKRTV+KGS+PIHNR
Sbjct: 50  SKMDLAPSPSMTFDANQSNKRTVKKGSNPIHNR 82


>Medtr5g040640.1 | Clavata3/ESR (CLE) gene family member MtCLE24 |
           HC | chr5:17857885-17856987 | 20130731
          Length = 108

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 15/101 (14%)

Query: 29  FLVLVCVGILAS-QPYNVFGLRSQDLALRW-EEGQLPFVRSFRVLKVVAMEDLKSKMESA 86
            ++L+ VG L S QP  V GL+S ++ALR  ++     +++   LK    E L +K  SA
Sbjct: 8   IMLLLFVGFLISIQPKEVSGLKSLEIALRHNQKDHRVMLQNQHTLKAPEKELLNTKKNSA 67

Query: 87  PAPSMT-------------FDPNRSNKRTVRKGSDPIHNRC 114
               M+             FDPN+S+KR VRKGSDPIHNR 
Sbjct: 68  NVNKMSVPTKKSSANVNNRFDPNQSSKRRVRKGSDPIHNRA 108