Miyakogusa Predicted Gene

Lj4g3v1616870.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1616870.1 tr|Q9SHG3|Q9SHG3_ARATH F20D23.26 protein
OS=Arabidopsis thaliana GN=F20D23.26 PE=4 SV=1,41.5,1e-16,SH2,SH2
domain; SH2 domain,NULL; SIGNAL TRANSDUCER AND ACTIVATOR OF
TRANSCRIPTION,NULL; SIGNAL TRANS,CUFF.49493.1
         (347 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g461480.1 | SH2 domain protein | HC | chr8:21667235-216525...   502   e-142

>Medtr8g461480.1 | SH2 domain protein | HC | chr8:21667235-21652533
           | 20130731
          Length = 711

 Score =  502 bits (1292), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/349 (71%), Positives = 275/349 (78%), Gaps = 9/349 (2%)

Query: 3   DESLEHMQCGLESTANPLVKRFRVGHDKISVSV-------QPDEEC-NSHVWTANQVQNE 54
           D SLE M  G E   NPL+KRFRVG DKISVSV       Q   EC NSHVWTANQV+  
Sbjct: 363 DVSLESMNSGHEEKTNPLMKRFRVGLDKISVSVKANPTLKQSGVECSNSHVWTANQVEKG 422

Query: 55  FPTSMDARPTKFXXXXXX-XXXXXXIGERNSPSNNMASRRYPISDMTIFKYCLAGLAERS 113
           FP S+D R   F              GER SPSN++ SRRY ISDMTIFKYCLAGLAERS
Sbjct: 423 FPKSLDGRSLNFEEADVSPSESSESTGERYSPSNSLESRRYQISDMTIFKYCLAGLAERS 482

Query: 114 LMLKEIAFFSSGNEILELAHHVSLYSGCSHHGNQILLAKRLIEDGTNLWKVLSPNNHHVS 173
            MLKEIA  +S  EI ELAH VS +SGCSHHGNQIL++KRLIEDGTNLW  +SPNNH + 
Sbjct: 483 QMLKEIAISASDREISELAHSVSHFSGCSHHGNQILISKRLIEDGTNLWLAMSPNNHPIP 542

Query: 174 WESAVYEIEEKFMKIASCDSRSLSHQDLELLRRIAGCQEYLTQESFEKLWCWVYPVAFTI 233
           W+SAVYE+EE+FMKIASC SRSLS QD+E+LR IAGCQEYL+ E+FEKLWCW+YPVA  I
Sbjct: 543 WKSAVYEVEEQFMKIASCGSRSLSQQDIEILRSIAGCQEYLSLENFEKLWCWLYPVACVI 602

Query: 234 SRDLINPIWNSVAPKWIEGLITKEEAEASLRGPAGFQEPGTFTLRFPTSRSWPHPDAGCL 293
           SRD +N IWNS++PKWIEG ITKEEAEASL+GP GFQE GTF LRFPTSRSWPHPDAGCL
Sbjct: 603 SRDWVNAIWNSMSPKWIEGFITKEEAEASLQGPGGFQERGTFILRFPTSRSWPHPDAGCL 662

Query: 294 IVTYVGNDYKIHHRLLSMDHAYGSGDKRTDMKPLQDMLLEEPELSRLGR 342
           IVTYVGNDYK+ H+LLSMDH YGS ++R D KPLQDMLL EPELSRLGR
Sbjct: 663 IVTYVGNDYKLRHKLLSMDHIYGSDNQRIDAKPLQDMLLAEPELSRLGR 711