Miyakogusa Predicted Gene

Lj4g3v1599320.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1599320.2 tr|Q9LMD3|Q9LMD3_ARATH F14D16.9 OS=Arabidopsis
thaliana GN=Clgn PE=4 SV=1,85.71,3e-16,DDT,DDT domain; FAMILY NOT
NAMED,NULL; coiled-coil,NULL; seg,NULL,CUFF.49460.2
         (263 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g107390.1 | aminoacyl-tRNA synthetase | HC | chr4:44406871...   468   e-132
Medtr3g108410.1 | hypothetical protein | HC | chr3:50101068-5010...   205   4e-53

>Medtr4g107390.1 | aminoacyl-tRNA synthetase | HC |
           chr4:44406871-44399957 | 20130731
          Length = 755

 Score =  468 bits (1205), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/263 (84%), Positives = 235/263 (89%)

Query: 1   MWEFASVLNFLHLFRPLLNISLEFSAEEFETALLTPNDTLFHIHMPLLKAIPPVTRMALT 60
           MWE ASVLNFL+LFRPLLNISLEFSAEEFETALL PNDTLF+IHMPLLKAIPP+TR+ALT
Sbjct: 127 MWELASVLNFLNLFRPLLNISLEFSAEEFETALLNPNDTLFYIHMPLLKAIPPITRVALT 186

Query: 61  RDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQE 120
           RDTWITVLCRKLRDWWHWVA+GDLPIVAS GAEIEVYKSLDP VRV+ILKALCDIRVEQE
Sbjct: 187 RDTWITVLCRKLRDWWHWVAEGDLPIVASQGAEIEVYKSLDPAVRVIILKALCDIRVEQE 246

Query: 121 DIRSYIDNSIKHGVQLSTFRKERIGGDSNGISYWYEDDPMIGHRLYREIRKTEVVQMKKG 180
           DIR++IDNS+KHGVQLSTFRKERIGGDSNGISYWYEDDP+IGHRLYREIRKTEV+Q +KG
Sbjct: 247 DIRNFIDNSVKHGVQLSTFRKERIGGDSNGISYWYEDDPVIGHRLYREIRKTEVIQPRKG 306

Query: 181 KARGSQVLSSTSYQWEAVATNFDEFQDVSEKLFSSKNRTEALVGKKLKIDMLPEIEXXXX 240
           +ARGSQVLS+TSYQWEAVATNFDEFQDVSEKLFSSKNRTE  VGKKLKIDMLPEIE    
Sbjct: 307 RARGSQVLSNTSYQWEAVATNFDEFQDVSEKLFSSKNRTETSVGKKLKIDMLPEIEKVHK 366

Query: 241 XXXXXXXXXXXXXXXXDNYLVMD 263
                           DNYLV D
Sbjct: 367 KKERLLKKQHREALLLDNYLVTD 389


>Medtr3g108410.1 | hypothetical protein | HC |
           chr3:50101068-50105833 | 20130731
          Length = 458

 Score =  205 bits (521), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/236 (47%), Positives = 153/236 (64%), Gaps = 5/236 (2%)

Query: 2   WEFASVLNFLHLFRPLLNISLEFSAEEFETALLTPNDTLFHIHMPLLKAIPPVTRMALTR 61
           WE ASVL+FL +F PLL   L+ +AEE E  L+ PN  L ++H+ LLK IPPV +     
Sbjct: 30  WELASVLHFLDVFSPLLGNDLKVTAEEIEIGLVKPNAFLTNLHIQLLKGIPPVGKALHDS 89

Query: 62  DTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQED 121
           D W+T L +KL  WW WVA+G  P+V S G EI  YK LDP  R+++LKALC++R +Q D
Sbjct: 90  DKWVTALSKKLTTWWPWVAEGKNPLVPSKGEEISKYKELDPLDRLLLLKALCEVRADQHD 149

Query: 122 IRSYIDNSIKHGVQLSTFRKERIGGDSNGISYWYEDDPMI-GHRLYREIRKTEVVQMKKG 180
           + SYI++++K G Q+S+FRKE  G D    SYWY+ +     HRLYRE   +     +KG
Sbjct: 150 VVSYINDALKEGTQISSFRKEAFGIDGTRTSYWYDANTKAQSHRLYRETITSVSTPNRKG 209

Query: 181 KARGSQVLSSTSYQWEAVATNFDEFQDVSEKLFSSKNRTEALVGKKLKIDMLPEIE 236
           K      LS  ++QWE +ATN DEF +V+EKL SSK+R E  +G +L+ D +P +E
Sbjct: 210 KG----CLSLPNFQWETLATNLDEFSEVAEKLSSSKSRVEIYMGDRLQSDAIPVLE 261