Miyakogusa Predicted Gene

Lj4g3v1599240.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1599240.1 tr|B9GVE3|B9GVE3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_757323 PE=4
SV=1,49.53,1e-18,Dynein_light,Dynein light chain, type 1/2; no
description,Dynein light chain, type 1/2; seg,NULL; DL,CUFF.49445.1
         (286 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g107350.1 | dynein light chain type 1 family protein | HC ...   322   2e-88
Medtr4g114060.2 | dynein light chain type 1 family protein | HC ...   137   1e-32
Medtr4g114060.1 | dynein light chain type 1 family protein | HC ...   137   1e-32
Medtr8g104900.1 | dynein light chain type 1 family protein | HC ...   131   7e-31
Medtr1g031880.1 | dynein light chain type 1 family protein | HC ...   114   1e-25
Medtr4g120150.1 | dynein light chain type 1 family protein | HC ...    84   2e-16
Medtr2g101850.1 | cytoplasmic dynein light chain | HC | chr2:438...    83   3e-16
Medtr8g464690.1 | dynein light chain type 1 family protein | HC ...    79   4e-15
Medtr6g087770.1 | cytoplasmic dynein light chain | HC | chr6:330...    74   2e-13

>Medtr4g107350.1 | dynein light chain type 1 family protein | HC |
           chr4:44373665-44370969 | 20130731
          Length = 307

 Score =  322 bits (826), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 201/320 (62%), Positives = 216/320 (67%), Gaps = 47/320 (14%)

Query: 1   MAHRSSQRRXXXXXXXX-----XXXXXXXXXXXTIFSASPSHHHYPKPNPDLIHASKSS- 54
           MAHRSS+RR                        TIFS+SPS  HYPKPN DLI A+KSS 
Sbjct: 1   MAHRSSRRRNTAPPETNPPPALAKQPKPTTTKTTIFSSSPSPSHYPKPNQDLIQATKSSS 60

Query: 55  FLVKPFSSLNLSRNHHKQ-AQTKHSSSPLVHTLSQTKSMTPSAIVESSKYSLPKPNT--T 111
           FLVKPF SLNL     KQ +QTKH  S L     Q KSMT SAI +SSK   P  NT  T
Sbjct: 61  FLVKPFQSLNLGSKKTKQHSQTKHVDSRL-----QGKSMTTSAIFDSSK---PNNNTHQT 112

Query: 112 HNTVLA---QKD----HVKKTHKEKP--------------SLMKNEKKDSIDRCVLVEDV 150
             TVL    +K+    H KKT KEKP               L+KNEKK      V VE  
Sbjct: 113 KITVLTPNHEKESVFLHSKKTLKEKPPQKPSSELERWKLQGLLKNEKK-----VVEVEKS 167

Query: 151 KKK--IEKSKHDVVERVSVSLGKSGG--RRRSFCGSQVDLGDVFAINGAKMVSADMPPFM 206
           +K   +EK   DV ERVSVS+G+SGG  RR+S CGS +DLGD FAINGAKMVSADMPPFM
Sbjct: 168 RKVTVVEKEGGDVKERVSVSMGQSGGGGRRKSLCGSMIDLGDFFAINGAKMVSADMPPFM 227

Query: 207 QIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFLY 266
           QIHAVDCARKA DSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFLY
Sbjct: 228 QIHAVDCARKAFDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFLY 287

Query: 267 FSMDQKLYILLFKTTVQKAD 286
           FSMDQKLYIL+FKT VQKAD
Sbjct: 288 FSMDQKLYILIFKTAVQKAD 307


>Medtr4g114060.2 | dynein light chain type 1 family protein | HC |
           chr4:46940344-46937870 | 20130731
          Length = 245

 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 102/150 (68%), Gaps = 11/150 (7%)

Query: 140 SIDRCVLVEDVKKKI---EKSKHDVVERVSVSLGKSGGRRRSFCGSQVD-LGDVFAINGA 195
           +I R ++VE+ +K +   +++K    E+V    GK    R+S   S ++ L  V      
Sbjct: 101 AIKRGIIVEEGRKSVSYVDETKLAAEEKV----GKFVEARKSV--SHIETLSSVIEKLQV 154

Query: 196 KMVSADMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGS 255
           K++ +DMP FMQ+HA  CAR+  DS+E+F+SK +A ++KKEFD  YGPAWHCIVG SFGS
Sbjct: 155 KVLVSDMPSFMQVHAFRCARRTYDSLEEFSSKHIAHNIKKEFDKAYGPAWHCIVGPSFGS 214

Query: 256 FVTHSVGGFLYFSMDQKLYILLFKTTVQKA 285
           FVTHS G FLYFSM+  LYILLFKT V+KA
Sbjct: 215 FVTHSTGCFLYFSMEN-LYILLFKTKVKKA 243


>Medtr4g114060.1 | dynein light chain type 1 family protein | HC |
           chr4:46940344-46937870 | 20130731
          Length = 245

 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 102/150 (68%), Gaps = 11/150 (7%)

Query: 140 SIDRCVLVEDVKKKI---EKSKHDVVERVSVSLGKSGGRRRSFCGSQVD-LGDVFAINGA 195
           +I R ++VE+ +K +   +++K    E+V    GK    R+S   S ++ L  V      
Sbjct: 101 AIKRGIIVEEGRKSVSYVDETKLAAEEKV----GKFVEARKSV--SHIETLSSVIEKLQV 154

Query: 196 KMVSADMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGS 255
           K++ +DMP FMQ+HA  CAR+  DS+E+F+SK +A ++KKEFD  YGPAWHCIVG SFGS
Sbjct: 155 KVLVSDMPSFMQVHAFRCARRTYDSLEEFSSKHIAHNIKKEFDKAYGPAWHCIVGPSFGS 214

Query: 256 FVTHSVGGFLYFSMDQKLYILLFKTTVQKA 285
           FVTHS G FLYFSM+  LYILLFKT V+KA
Sbjct: 215 FVTHSTGCFLYFSMEN-LYILLFKTKVKKA 243


>Medtr8g104900.1 | dynein light chain type 1 family protein | HC |
           chr8:44226350-44232514 | 20130731
          Length = 133

 Score =  131 bits (330), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 64/99 (64%), Positives = 76/99 (76%), Gaps = 3/99 (3%)

Query: 190 FAINGAKMVSADMPPFMQIHAVDCARKAIDSM--EKFTSKTLALSLKKEFDGVYGPAWHC 247
           F  N  K+ + DMP  +Q HA  CAR  +DSM  +K  +K LAL+LKKEFD  YGPAWHC
Sbjct: 34  FNNNNVKIRACDMPLTLQNHAFRCARHLLDSMPPKKLHTKRLALTLKKEFDSTYGPAWHC 93

Query: 248 IVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTTVQKAD 286
           IVGTSFGS+VTHSVGGFLYFS+D K++ILLFKTTV+  D
Sbjct: 94  IVGTSFGSYVTHSVGGFLYFSID-KVHILLFKTTVEPLD 131


>Medtr1g031880.1 | dynein light chain type 1 family protein | HC |
           chr1:11198739-11201405 | 20130731
          Length = 146

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 70/96 (72%), Gaps = 3/96 (3%)

Query: 193 NGAKMVSADMPPFMQIHAVDCARKAIDSM--EKFTSKTLALSLKKEFDGVYGPAWHCIVG 250
           N   + + DM   +Q HA   AR  +DSM  +K  SK LALSLKKEFD  YGPAWHCIVG
Sbjct: 51  NSIHVKACDMSLPLQKHAFQFARDHLDSMPTKKPDSKHLALSLKKEFDSCYGPAWHCIVG 110

Query: 251 TSFGSFVTHSVGGFLYFSMDQKLYILLFKTTVQKAD 286
           TSFGS+VTHSVGGF+YFS+D K++ILLF+T V   D
Sbjct: 111 TSFGSYVTHSVGGFVYFSID-KVHILLFRTAVAPLD 145


>Medtr4g120150.1 | dynein light chain type 1 family protein | HC |
           chr4:49807388-49810451 | 20130731
          Length = 130

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 54/82 (65%), Gaps = 3/82 (3%)

Query: 199 SADMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVT 258
           SADM P MQ  AVD A  A +       K +A ++KKEFD  +GP WHCIVG +FGS+VT
Sbjct: 51  SADMLPDMQKEAVDIAVVAFERHN--VEKDVAETIKKEFDKRHGPTWHCIVGRNFGSYVT 108

Query: 259 HSVGGFLYFSMDQKLYILLFKT 280
           H    F+YF +DQK  +LLFK+
Sbjct: 109 HETNHFVYFYLDQKA-VLLFKS 129


>Medtr2g101850.1 | cytoplasmic dynein light chain | HC |
           chr2:43819163-43818213 | 20130731
          Length = 91

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 192 INGAKMVS-ADMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVG 250
           + G  M+   DMP  MQI A+  A +A+D  +    K++A  +KKEFD  YG  W C+VG
Sbjct: 2   LEGKAMIEDTDMPTKMQIQAMAYASEALDLYDVIDCKSIAAHIKKEFDARYGGGWQCVVG 61

Query: 251 TSFGSFVTHSVGGFLYFSMDQKLYILLFK 279
           +SFG F THS G F+YF++ + L  L+FK
Sbjct: 62  SSFGCFFTHSKGTFIYFTL-ETLNFLIFK 89


>Medtr8g464690.1 | dynein light chain type 1 family protein | HC |
           chr8:22911007-22910269 | 20130731
          Length = 109

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 201 DMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVTHS 260
           DM   MQ  A+D A KA+D  +   +  +A  +KKEFD V+GP W CIVGT FGSFVTH 
Sbjct: 12  DMLQTMQQDALDLACKALDFYDVTEAIDIARFIKKEFDRVHGPGWQCIVGTDFGSFVTHC 71

Query: 261 VGGFLYFSMDQKLYILLFK 279
            G F+YF +   + ILLFK
Sbjct: 72  SGCFIYFCIG-SMAILLFK 89


>Medtr6g087770.1 | cytoplasmic dynein light chain | HC |
           chr6:33030451-33029408 | 20130731
          Length = 93

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 201 DMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVTHS 260
           DMP  MQI A+  A +A+D  +    +++A  +KKEFD  YG  W C+VG++FG F +H+
Sbjct: 12  DMPLKMQIQAMSYASQALDLYDVCDCRSIAGYIKKEFDKNYGSRWQCVVGSNFGCFFSHT 71

Query: 261 VGGFLYFSMDQKLYILLFK 279
            G F+YFS+ + L  L++K
Sbjct: 72  PGTFIYFSL-ETLKFLIYK 89