Miyakogusa Predicted Gene

Lj4g3v1561710.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1561710.2 tr|A9S692|A9S692_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_75128
,34.69,1e-18,seg,NULL,CUFF.49416.2
         (351 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g106550.1 | arginine/serine-rich coiled coil protein | HC ...   234   8e-62

>Medtr4g106550.1 | arginine/serine-rich coiled coil protein | HC |
           chr4:44205555-44201513 | 20130731
          Length = 370

 Score =  234 bits (598), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 125/166 (75%), Positives = 142/166 (85%), Gaps = 4/166 (2%)

Query: 189 DRGKGREMAKENTAGVVDYAKLIRGYDNMSAAERVKAKMKLQLSETAAKDSEKGAGWERF 248
           +RGKG EM K    GV DYAKLI GYDNM+ AERVKAKMKLQLSETAA+DS++G GWERF
Sbjct: 206 ERGKGSEMRKGKNVGV-DYAKLIHGYDNMAPAERVKAKMKLQLSETAARDSDRGVGWERF 264

Query: 249 EFNKDAPLDDEEFEVAEDDGSLVKHIGQSFRFSAVEAKREERIQAAHEEAMFG-ASALPP 307
           EFNKDAPLDDEE E AEDD SLVKHIGQSFRFSAVE+KRE++IQAAH+EAMFG  +  PP
Sbjct: 265 EFNKDAPLDDEEVEGAEDDASLVKHIGQSFRFSAVESKREDQIQAAHDEAMFGAPAPPPP 324

Query: 308 PINTDSEPEREDEEA--DKKELVTSLLSETVLAKQKGSWRDRVRQA 351
             +TDSEPERE+E+   +KK+LV+SLLSETVLA+ KGSWRDRVRQ 
Sbjct: 325 TSSTDSEPERENEKEVDNKKDLVSSLLSETVLARPKGSWRDRVRQT 370



 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 1  MEEEKAAAYYDELTRKGEGAARFKQGLGFSSSAAAD-VPX-----XXXXXXXXXXXXXXX 54
          MEEEKAAAYYDELTRKGEGAA+FKQGLGFS+S + D VP                     
Sbjct: 1  MEEEKAAAYYDELTRKGEGAAKFKQGLGFSTSTSNDAVPKPGSSLVSSSSFLSQFVKASS 60

Query: 55 XXXXXXXXXXXXXXXDKKAQLQSIQNKLNIK 85
                         D+K+QLQSIQNKL  K
Sbjct: 61 SSTTTTASTTAPSDSDRKSQLQSIQNKLKKK 91