Miyakogusa Predicted Gene

Lj4g3v1561700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1561700.1 Non Characterized Hit- tr|B9FSH6|B9FSH6_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,38.89,0.0000004,"Winged helix" DNA-binding domain,NULL;
E2F_TDP,Transcription factor E2F/dimerisation partner
(TDP);,CUFF.49420.1
         (383 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g106540.3 | E2F transcription factor-E2FE-like protein | H...   527   e-150
Medtr4g106540.4 | E2F transcription factor-E2FE-like protein | H...   471   e-133
Medtr4g106540.1 | E2F transcription factor-E2FE-like protein | H...   471   e-133
Medtr4g106540.2 | E2F transcription factor-E2FE-like protein | H...   463   e-130
Medtr4g106540.6 | E2F transcription factor-E2FE-like protein | H...   432   e-121
Medtr4g106540.5 | E2F transcription factor-E2FE-like protein | H...   424   e-119
Medtr3g113800.1 | E2F transcription factor | HC | chr3:53087588-...    67   3e-11
Medtr3g113800.2 | E2F transcription factor | HC | chr3:53087590-...    67   4e-11
Medtr4g052000.1 | E2F transcription factor | HC | chr4:18814210-...    66   6e-11
Medtr1g105110.1 | E2F transcription factor | HC | chr1:25000070-...    65   8e-11

>Medtr4g106540.3 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194429-44190467 | 20130731
          Length = 385

 Score =  527 bits (1357), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/381 (70%), Positives = 305/381 (80%), Gaps = 19/381 (4%)

Query: 16  KHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVL 75
           +HHTY+RKQKSLGLLCTNFLSLYN+D++ LIGLDDAA++LGVERRRIYDIVNVLESIGVL
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 76  SRKAKNQYTWKGFRAIPLALQELKDEGLREK-SSDFDGGNDSGKVSDDEDDEEGFGNPS- 133
           +RKAKNQYTWKGF AIP+ALQELK+EGL +  +S  +G N+  KVSD+ED++E     + 
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 134 ---------TGSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXX 184
                    TGSQN+    NS  PRS+KND RREKSLALLTQNFVKLF+CSN+EMIS   
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSAFPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLDD 189

Query: 185 XXXXXXXXXHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNE 244
                    +N+S MRTKVRRLYDIANVL+SM+LIEKTHT DTRKPAFRWLGLKG+T NE
Sbjct: 190 AARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLNE 249

Query: 245 -SVSTSNLNESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQAD-K 302
            S+  S  NESRKRAFG DVTNISFARNR DLFM GDF    KKQK +END  L Q D K
Sbjct: 250 ASLYNSKQNESRKRAFGNDVTNISFARNRMDLFMGGDF----KKQKTMENDSGLCQEDVK 305

Query: 303 SNLQQDTKQTYQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQALKELFSH 362
             ++Q +   YQFGPFAPA+VSKAG+SEN  VKQVHDWESLAT HCP+YQNQALKEL+SH
Sbjct: 306 QGIKQTSAANYQFGPFAPAFVSKAGSSEN-KVKQVHDWESLATEHCPQYQNQALKELYSH 364

Query: 363 YMEAWRSWYSEVAGKRSIQTL 383
           YMEAW+SWYSEVAGKRS Q L
Sbjct: 365 YMEAWKSWYSEVAGKRSTQVL 385


>Medtr4g106540.4 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194343-44190467 | 20130731
          Length = 358

 Score =  471 bits (1211), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/353 (68%), Positives = 278/353 (78%), Gaps = 19/353 (5%)

Query: 16  KHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVL 75
           +HHTY+RKQKSLGLLCTNFLSLYN+D++ LIGLDDAA++LGVERRRIYDIVNVLESIGVL
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 76  SRKAKNQYTWKGFRAIPLALQELKDEGLREK-SSDFDGGNDSGKVSDDEDDEEGFGNPS- 133
           +RKAKNQYTWKGF AIP+ALQELK+EGL +  +S  +G N+  KVSD+ED++E     + 
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 134 ---------TGSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXX 184
                    TGSQN+    NS  PRS+KND RREKSLALLTQNFVKLF+CSN+EMIS   
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSAFPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLDD 189

Query: 185 XXXXXXXXXHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNE 244
                    +N+S MRTKVRRLYDIANVL+SM+LIEKTHT DTRKPAFRWLGLKG+T NE
Sbjct: 190 AARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLNE 249

Query: 245 -SVSTSNLNESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQAD-K 302
            S+  S  NESRKRAFG DVTNISFARNR DLFM GDF    KKQK +END  L Q D K
Sbjct: 250 ASLYNSKQNESRKRAFGNDVTNISFARNRMDLFMGGDF----KKQKTMENDSGLCQEDVK 305

Query: 303 SNLQQDTKQTYQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQA 355
             ++Q +   YQFGPFAPA+VSKAG+SEN  VKQVHDWESLAT HCP+YQNQ 
Sbjct: 306 QGIKQTSAANYQFGPFAPAFVSKAGSSENK-VKQVHDWESLATEHCPQYQNQG 357


>Medtr4g106540.1 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194355-44190467 | 20130731
          Length = 358

 Score =  471 bits (1211), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/353 (68%), Positives = 278/353 (78%), Gaps = 19/353 (5%)

Query: 16  KHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVL 75
           +HHTY+RKQKSLGLLCTNFLSLYN+D++ LIGLDDAA++LGVERRRIYDIVNVLESIGVL
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 76  SRKAKNQYTWKGFRAIPLALQELKDEGLREK-SSDFDGGNDSGKVSDDEDDEEGFGNPS- 133
           +RKAKNQYTWKGF AIP+ALQELK+EGL +  +S  +G N+  KVSD+ED++E     + 
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 134 ---------TGSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXX 184
                    TGSQN+    NS  PRS+KND RREKSLALLTQNFVKLF+CSN+EMIS   
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSAFPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLDD 189

Query: 185 XXXXXXXXXHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNE 244
                    +N+S MRTKVRRLYDIANVL+SM+LIEKTHT DTRKPAFRWLGLKG+T NE
Sbjct: 190 AARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLNE 249

Query: 245 -SVSTSNLNESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQAD-K 302
            S+  S  NESRKRAFG DVTNISFARNR DLFM GDF    KKQK +END  L Q D K
Sbjct: 250 ASLYNSKQNESRKRAFGNDVTNISFARNRMDLFMGGDF----KKQKTMENDSGLCQEDVK 305

Query: 303 SNLQQDTKQTYQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQA 355
             ++Q +   YQFGPFAPA+VSKAG+SEN  VKQVHDWESLAT HCP+YQNQ 
Sbjct: 306 QGIKQTSAANYQFGPFAPAFVSKAGSSENK-VKQVHDWESLATEHCPQYQNQG 357


>Medtr4g106540.2 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194065-44191173 | 20130731
          Length = 364

 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/359 (67%), Positives = 277/359 (77%), Gaps = 25/359 (6%)

Query: 16  KHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVL 75
           +HHTY+RKQKSLGLLCTNFLSLYN+D++ LIGLDDAA++LGVERRRIYDIVNVLESIGVL
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 76  SRKAKNQYTWKGFRAIPLALQELKDEGLREK-SSDFDGGNDSGKVSDDEDDEEGFGNPS- 133
           +RKAKNQYTWKGF AIP+ALQELK+EGL +  +S  +G N+  KVSD+ED++E     + 
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 134 ---------TGSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXX 184
                    TGSQN+    NS  PRS+KND RREKSLALLTQNFVKLF+CSN+EMIS   
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSAFPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLDD 189

Query: 185 XXXXXXXXXHNTSIMR------TKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLK 238
                    +N+S MR       KVRRLYDIANVL+SM+LIEKTHT DTRKPAFRWLGLK
Sbjct: 190 AARLLLGDAYNSSTMRIPSGLAAKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLK 249

Query: 239 GRTGNE-SVSTSNLNESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVL 297
           G+T NE S+  S  NESRKRAFG DVTNISFARNR DLFM GDF    KKQK +END  L
Sbjct: 250 GKTLNEASLYNSKQNESRKRAFGNDVTNISFARNRMDLFMGGDF----KKQKTMENDSGL 305

Query: 298 SQAD-KSNLQQDTKQTYQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQA 355
            Q D K  ++Q +   YQFGPFAPA+VSKAG+SEN  VKQVHDWESLAT HCP+YQNQ 
Sbjct: 306 CQEDVKQGIKQTSAANYQFGPFAPAFVSKAGSSENK-VKQVHDWESLATEHCPQYQNQG 363


>Medtr4g106540.6 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194316-44190574 | 20130731
          Length = 339

 Score =  432 bits (1111), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/335 (67%), Positives = 262/335 (78%), Gaps = 19/335 (5%)

Query: 16  KHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVL 75
           +HHTY+RKQKSLGLLCTNFLSLYN+D++ LIGLDDAA++LGVERRRIYDIVNVLESIGVL
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 76  SRKAKNQYTWKGFRAIPLALQELKDEGL-REKSSDFDGGNDSGKVSDDEDDEEGFGNPS- 133
           +RKAKNQYTWKGF AIP+ALQELK+EGL +  +S  +G N+  KVSD+ED++E     + 
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 134 ---------TGSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXX 184
                    TGSQN+    NS  PRS+KND RREKSLALLTQNFVKLF+CSN+EMIS   
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSAFPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLDD 189

Query: 185 XXXXXXXXXHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNE 244
                    +N+S MRTKVRRLYDIANVL+SM+LIEKTHT DTRKPAFRWLGLKG+T NE
Sbjct: 190 AARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLNE 249

Query: 245 -SVSTSNLNESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQAD-K 302
            S+  S  NESRKRAFG DVTNISFARNR DLFM GDF    KKQK +END  L Q D K
Sbjct: 250 ASLYNSKQNESRKRAFGNDVTNISFARNRMDLFMGGDF----KKQKTMENDSGLCQEDVK 305

Query: 303 SNLQQDTKQTYQFGPFAPAYVSKAGNSENSNVKQV 337
             ++Q +   YQFGPFAPA+VSKAG+SEN  VKQ+
Sbjct: 306 QGIKQTSAANYQFGPFAPAFVSKAGSSENK-VKQL 339


>Medtr4g106540.5 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194316-44190574 | 20130731
          Length = 345

 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/341 (66%), Positives = 261/341 (76%), Gaps = 25/341 (7%)

Query: 16  KHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVL 75
           +HHTY+RKQKSLGLLCTNFLSLYN+D++ LIGLDDAA++LGVERRRIYDIVNVLESIGVL
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 76  SRKAKNQYTWKGFRAIPLALQELKDEGL-REKSSDFDGGNDSGKVSDDEDDEEGFGNPS- 133
           +RKAKNQYTWKGF AIP+ALQELK+EGL +  +S  +G N+  KVSD+ED++E     + 
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 134 ---------TGSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXX 184
                    TGSQN+    NS  PRS+KND RREKSLALLTQNFVKLF+CSN+EMIS   
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSAFPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLDD 189

Query: 185 XXXXXXXXXHNTSIMR------TKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLK 238
                    +N+S MR       KVRRLYDIANVL+SM+LIEKTHT DTRKPAFRWLGLK
Sbjct: 190 AARLLLGDAYNSSTMRIPSGLAAKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLK 249

Query: 239 GRTGNE-SVSTSNLNESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVL 297
           G+T NE S+  S  NESRKRAFG DVTNISFARNR DLFM GDF    KKQK +END  L
Sbjct: 250 GKTLNEASLYNSKQNESRKRAFGNDVTNISFARNRMDLFMGGDF----KKQKTMENDSGL 305

Query: 298 SQAD-KSNLQQDTKQTYQFGPFAPAYVSKAGNSENSNVKQV 337
            Q D K  ++Q +   YQFGPFAPA+VSKAG+SEN  VKQ+
Sbjct: 306 CQEDVKQGIKQTSAANYQFGPFAPAFVSKAGSSENK-VKQL 345


>Medtr3g113800.1 | E2F transcription factor | HC |
           chr3:53087588-53083226 | 20130731
          Length = 363

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 19  TYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRK 78
           T NR   SLGLL   F+SL N      + L+  A  L V++RRIYDI NVLE IG++ + 
Sbjct: 99  TVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILKVQKRRIYDITNVLEGIGLIEKT 158

Query: 79  AKNQYTWKGFRAI-PLALQE----LKDE 101
           +KN   WKG   + P  L+     LKDE
Sbjct: 159 SKNHIRWKGCDGLEPRELEHQVNTLKDE 186


>Medtr3g113800.2 | E2F transcription factor | HC |
           chr3:53087590-53083246 | 20130731
          Length = 309

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 19  TYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRK 78
           T NR   SLGLL   F+SL N      + L+  A  L V++RRIYDI NVLE IG++ + 
Sbjct: 99  TVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILKVQKRRIYDITNVLEGIGLIEKT 158

Query: 79  AKNQYTWKGF-----RAIPLALQELKDE 101
           +KN   WKG      R +   +  LKDE
Sbjct: 159 SKNHIRWKGCDGLEPRELEHQVNTLKDE 186


>Medtr4g052000.1 | E2F transcription factor | HC |
           chr4:18814210-18820291 | 20130731
          Length = 460

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 22  RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
           R   SLGLL   F++L  +    ++ L++AA  L V++RRIYDI NV E IG++ +K KN
Sbjct: 138 RYDSSLGLLTKKFIALIKQAEDGILDLNNAADTLEVQKRRIYDITNVFEGIGLIEKKLKN 197

Query: 82  QYTWKGF 88
           +  WKG 
Sbjct: 198 RIQWKGL 204


>Medtr1g105110.1 | E2F transcription factor | HC |
           chr1:25000070-24993884 | 20130731
          Length = 463

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 22  RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
           R   SLGLL   F+ L  R    ++ L+ AA  L V++RRIYDI NVLE IG++ +  KN
Sbjct: 142 RYDSSLGLLTKKFIHLLKRAEDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKNIKN 201

Query: 82  QYTWKGFRA 90
           +  WKG  +
Sbjct: 202 RIYWKGIES 210