Miyakogusa Predicted Gene

Lj4g3v1560530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1560530.1 tr|I8RPS3|I8RPS3_YERPE Ribosomal RNA small
subunit methyltransferase G OS=Yersinia pestis PY-102
GN=,42.75,2e-19,no description,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; GidB,rRNA small subunit methyl,CUFF.49404.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g106410.1 | ribosomal RNA small subunit methyltransferase ...   259   1e-69

>Medtr4g106410.1 | ribosomal RNA small subunit methyltransferase G |
           HC | chr4:44136526-44142797 | 20130731
          Length = 406

 Score =  259 bits (661), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/158 (79%), Positives = 139/158 (87%), Gaps = 1/158 (0%)

Query: 4   NLQFSPGTFIKHLTSRKFTTHCLHKSSTPSLSHFGTLTSRQKDQIHLYVDALLQWNKRMN 63
           NLQFS  TF KHLT RK+TT C   +ST +LSHF TLTSRQKDQIHLYVD LLQWNKRMN
Sbjct: 129 NLQFSRWTFFKHLTPRKYTTLC-QNNSTSNLSHFLTLTSRQKDQIHLYVDTLLQWNKRMN 187

Query: 64  LTAVREVNQVMERHVEDSLAILPPLSDCYRAHCGGSGDKLSLVDVGTGAGLPGVVLAIAR 123
           LTAV+EVN+VMERH+EDSLAILPPLSD Y +H   S DK+ LVDVGTGAGLPGVVLAIAR
Sbjct: 188 LTAVKEVNEVMERHIEDSLAILPPLSDNYMSHSSKSIDKVKLVDVGTGAGLPGVVLAIAR 247

Query: 124 PEWDVTLLESMNKRCVFLEHVVSVVGSSNIQVVRGRAE 161
           P+WDVTL+ESMNKRCVFLEHVV V+GSSN+Q+VRGRAE
Sbjct: 248 PDWDVTLMESMNKRCVFLEHVVGVIGSSNLQIVRGRAE 285