Miyakogusa Predicted Gene

Lj4g3v1559460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1559460.1 tr|B6TYH2|B6TYH2_MAIZE ROS1 protein OS=Zea mays
PE=2 SV=1,52.81,3e-18,DNA-glycosylase,DNA glycosylase,CUFF.49395.1
         (120 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g106380.1 | HhH-GPD base excision DNA repair family protei...   147   2e-36
Medtr4g106380.2 | HhH-GPD base excision DNA repair family protei...   147   2e-36

>Medtr4g106380.1 | HhH-GPD base excision DNA repair family protein |
           HC | chr4:44120207-44117420 | 20130731
          Length = 280

 Score =  147 bits (372), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 88/123 (71%), Gaps = 8/123 (6%)

Query: 1   MEKRRKRKQQEVAELKEQPPPQPKSVRV----EENLKNPFPSHTRPTPQECQTVRDTLLS 56
           MEK+RKRK     + +      P SV+V     EN KNPFPSH+ PTPQEC  +RD LLS
Sbjct: 1   MEKKRKRK----VKTERDGDRNPNSVQVPQIKTENPKNPFPSHSAPTPQECLEIRDNLLS 56

Query: 57  LHGIPPELAKYRQLQPPNSGTEPEETVLDGLVRTVLSQNTTEANSQKAFASLKSSFPDWE 116
           LHGIPPELAKYR+ Q  N   EP ETVLDGLVRT+LSQNTTEANS KAFASLKS FP WE
Sbjct: 57  LHGIPPELAKYRKSQQTNDTVEPPETVLDGLVRTILSQNTTEANSNKAFASLKSLFPTWE 116

Query: 117 LVR 119
            V 
Sbjct: 117 HVH 119


>Medtr4g106380.2 | HhH-GPD base excision DNA repair family protein |
           HC | chr4:44120207-44117420 | 20130731
          Length = 253

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 88/122 (72%), Gaps = 8/122 (6%)

Query: 1   MEKRRKRKQQEVAELKEQPPPQPKSVRV----EENLKNPFPSHTRPTPQECQTVRDTLLS 56
           MEK+RKRK     + +      P SV+V     EN KNPFPSH+ PTPQEC  +RD LLS
Sbjct: 1   MEKKRKRK----VKTERDGDRNPNSVQVPQIKTENPKNPFPSHSAPTPQECLEIRDNLLS 56

Query: 57  LHGIPPELAKYRQLQPPNSGTEPEETVLDGLVRTVLSQNTTEANSQKAFASLKSSFPDWE 116
           LHGIPPELAKYR+ Q  N   EP ETVLDGLVRT+LSQNTTEANS KAFASLKS FP WE
Sbjct: 57  LHGIPPELAKYRKSQQTNDTVEPPETVLDGLVRTILSQNTTEANSNKAFASLKSLFPTWE 116

Query: 117 LV 118
            V
Sbjct: 117 HV 118