Miyakogusa Predicted Gene

Lj4g3v1535120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1535120.1 Non Characterized Hit- tr|B9RB56|B9RB56_RICCO
RNA-dependent RNA polymerase, putative OS=Ricinus comm,63.89,3e-18,
,CUFF.49358.1
         (72 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g106660.1 | RNA-dependent RNA polymerase family protein | ...   112   7e-26
Medtr4g106660.2 | RNA-dependent RNA polymerase family protein | ...   112   8e-26

>Medtr4g106660.1 | RNA-dependent RNA polymerase family protein | HC
           | chr4:44020611-44014643 | 20130731
          Length = 1277

 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 60/72 (83%)

Query: 1   MVKCCPASKLPYEDLFQLNCLVHTQKISLASVDDELIDLFGSLTDETKAMVFQKFHKLNS 60
           +VKC   SKLPYE LFQLN LVHTQKISLASV+DELIDL  SL  ETKA++FQK HK+NS
Sbjct: 279 LVKCRLDSKLPYESLFQLNSLVHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNS 338

Query: 61  TCYEPLKFVNNQ 72
           TCYEPLK+V  Q
Sbjct: 339 TCYEPLKYVRTQ 350


>Medtr4g106660.2 | RNA-dependent RNA polymerase family protein | HC
           | chr4:44020672-44015304 | 20130731
          Length = 1123

 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 60/72 (83%)

Query: 1   MVKCCPASKLPYEDLFQLNCLVHTQKISLASVDDELIDLFGSLTDETKAMVFQKFHKLNS 60
           +VKC   SKLPYE LFQLN LVHTQKISLASV+DELIDL  SL  ETKA++FQK HK+NS
Sbjct: 279 LVKCRLDSKLPYESLFQLNSLVHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNS 338

Query: 61  TCYEPLKFVNNQ 72
           TCYEPLK+V  Q
Sbjct: 339 TCYEPLKYVRTQ 350