Miyakogusa Predicted Gene
- Lj4g3v1535110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1535110.1 tr|G7JNT8|G7JNT8_MEDTR Rna-dependent RNA
polymerase OS=Medicago truncatula GN=MTR_4g106660 PE=4
SV=1,78.55,0,RdRP,RNA-dependent RNA polymerase, eukaryotic-type;
RNA-DEPENDENT RNA POLYMERASE,RNA-dependent RNA p,CUFF.49363.1
(1122 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g106660.1 | RNA-dependent RNA polymerase family protein | ... 1864 0.0
Medtr4g106660.2 | RNA-dependent RNA polymerase family protein | ... 1859 0.0
Medtr1g032590.1 | RNA-directed RNA polymerase | HC | chr1:116144... 745 0.0
Medtr1g032630.3 | RNA-directed RNA polymerase | HC | chr1:116348... 745 0.0
Medtr1g032630.1 | RNA-directed RNA polymerase | HC | chr1:116348... 745 0.0
Medtr1g032610.1 | RNA-directed RNA polymerase | HC | chr1:116260... 739 0.0
Medtr1g032610.2 | RNA-directed RNA polymerase | HC | chr1:116260... 728 0.0
Medtr1g032720.1 | RNA-directed RNA polymerase | LC | chr1:116909... 696 0.0
Medtr3g107390.2 | RNA-dependent RNA polymerase family protein | ... 562 e-160
Medtr3g107390.1 | RNA-dependent RNA polymerase family protein | ... 562 e-160
Medtr1g032630.2 | RNA-directed RNA polymerase | HC | chr1:116348... 477 e-134
Medtr1g032710.1 | RNA-dependent RNA polymerase family protein | ... 444 e-124
Medtr6g088660.1 | RNA-dependent RNA polymerase family protein | ... 79 3e-14
>Medtr4g106660.1 | RNA-dependent RNA polymerase family protein | HC |
chr4:44020611-44014643 | 20130731
Length = 1277
Score = 1864 bits (4828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 880/1119 (78%), Positives = 995/1119 (88%), Gaps = 3/1119 (0%)
Query: 1 MGVPTGK-PTVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQF 59
M +P+ + PTVR+ NIP +ATA DLL +L++T G SS++ALEIFSDY+NWKSRG GRVQF
Sbjct: 1 MVIPSSETPTVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQF 60
Query: 60 EDLATKSRALSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDD 119
E L KS+AL+LAE++KL+ SHFL L +SDDIIPRP LP++R+NN L AGF +GPD
Sbjct: 61 ETLEAKSKALTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDC 120
Query: 120 FVILDTWDGVQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALI 179
+L +W+GV+GW+MPER++L+FWV +C+KLEIPFE+ILE GY S D+G P+AL+
Sbjct: 121 MSVLQSWEGVRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCS-DEGSKPNALL 179
Query: 180 LKLKYGPRIYQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEI 239
LKL+YGPRIYQ+ +GP++A+KFK DRY FCK++ EF+WVRTTDFS +KSIGHSTSFFWEI
Sbjct: 180 LKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEI 239
Query: 240 DEESSSLDVFQSFPLYRVSLKDLNL-DQKYSCSATETVPLVKCGPGSKLPYEDLFQLNCL 298
EES DVF+SFPLYR +LKDL+L D + CS TETVPLVKC SKLPYE LFQLN L
Sbjct: 240 VEESFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSL 299
Query: 299 VHTQKISLASVNDELIALFGSLTDETKAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRRK 358
VHTQKISLASVNDELI L SL ETKA++FQKLHK+NSTCY+PL++V TQLHVLS ++K
Sbjct: 300 VHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKK 359
Query: 359 RHLPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEE 418
LPS QKRL DNNIMSCHRALITP+KIYCLGPELETSNHVVKHFA YASDFMRITFVEE
Sbjct: 360 SVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEE 419
Query: 419 DWSKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNS 478
DWSKLP+NA+S T+ KG+FS+P +TEIYKR+L ILRDGI+IGSKRFEFLAFSASQLRSNS
Sbjct: 420 DWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNS 479
Query: 479 VWVFASNDHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIE 538
VW+FASND VKAADIREWMG FNNIRSVSKCAARMGQLFSSS+QTFE+ PQ+V++IPDIE
Sbjct: 480 VWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIE 539
Query: 539 VNSDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRK 598
+ SDG+DYCFSDGIGKIS SFARQ+A+KLKLD++RIPSAFQIRYGGYKGVIA+DRHSF+K
Sbjct: 540 ITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFKK 599
Query: 599 LSLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLG 658
LSLR SMLKFES NRMLCVTKWSESMPCFLNREIISLLSTLG+KDEALLA+Q++QL LLG
Sbjct: 600 LSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLG 659
Query: 659 RMLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRC 718
+MLTD+EAALDVLESL+G DS SILVKMLH+FYEPNSEPYLSMMLKAHYT QLSDLKSRC
Sbjct: 660 KMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRC 719
Query: 719 RICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVI 778
RI VPKGR+L+GCLDETG+LNYGQVFVR+TV KT E GD++LR VDGDDSTRIIVGKV+
Sbjct: 720 RIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKVV 779
Query: 779 VTKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISW 838
VTKNPCLHPGD+RVLDA+Y EELEE G+RDCLVFPQKGHRPHPNECSGGDLDGDLFFISW
Sbjct: 780 VTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISW 839
Query: 839 DKDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREP 898
DKDLIP +TE PMDYT RRPRIMDH VTLEEI QFFVDYMINDTLGAISTAHLVHADRE
Sbjct: 840 DKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREH 899
Query: 899 DKARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKL 958
DKA+S KCLELA+LHSMAVDFAKTGAPA MPR LKPR FPDFMERFEKPMYIS GVLGKL
Sbjct: 900 DKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGKL 959
Query: 959 YRALVESKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFY 1018
YRA ++S LQ ++V SEK A++AYD LE +GFE FLETA SH++MYA+KM +LM FY
Sbjct: 960 YRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSFY 1019
Query: 1019 GAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQA 1078
GA TEDE+LTGNLQNRASYLQRDNRRY DMKDRILISVKDLQ EAKEWFE+DCQ HEYQ
Sbjct: 1020 GATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQLEAKEWFESDCQPHEYQL 1079
Query: 1079 MASAWYHVTYHPKYYHESSSFLSFPWIVGDILLHIKSVN 1117
MASAWYHVTYHPKYY ESS+FLSFPWIVGDILLHIKS N
Sbjct: 1080 MASAWYHVTYHPKYYIESSTFLSFPWIVGDILLHIKSAN 1118
Score = 184 bits (467), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/197 (52%), Positives = 123/197 (62%), Gaps = 35/197 (17%)
Query: 860 IMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKARSSKCLELAQLHSMAVDF 919
I+ H+ + +I +FFVDYMI DTLGAISTAHLVHAD E +KA+S KCLELA+LHSMAVDF
Sbjct: 1110 ILLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDF 1169
Query: 920 AKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLYRALVESKLQASSNVVWSEK- 978
AKTGA A MPRVLKP+ FPDFMERFEKPMY+S GVLGKLYRALVES +Q +SN V S
Sbjct: 1170 AKTGALAEMPRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRALVESTMQLTSNFVSSGNF 1229
Query: 979 LAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYL 1038
L++ +NL+ FL K+
Sbjct: 1230 LSKKHMIINLKLMVLRPFLRLPQLTKKCM------------------------------- 1258
Query: 1039 QRDNRRYTDMKDRILIS 1055
RRY DMKD+I+IS
Sbjct: 1259 ---RRRYGDMKDQIMIS 1272
>Medtr4g106660.2 | RNA-dependent RNA polymerase family protein | HC |
chr4:44020672-44015304 | 20130731
Length = 1123
Score = 1859 bits (4816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 880/1120 (78%), Positives = 996/1120 (88%), Gaps = 3/1120 (0%)
Query: 1 MGVPTGK-PTVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQF 59
M +P+ + PTVR+ NIP +ATA DLL +L++T G SS++ALEIFSDY+NWKSRG GRVQF
Sbjct: 1 MVIPSSETPTVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQF 60
Query: 60 EDLATKSRALSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDD 119
E L KS+AL+LAE++KL+ SHFL L +SDDIIPRP LP++R+NN L AGF +GPD
Sbjct: 61 ETLEAKSKALTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDC 120
Query: 120 FVILDTWDGVQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALI 179
+L +W+GV+GW+MPER++L+FWV +C+KLEIPFE+ILE GY S D+G P+AL+
Sbjct: 121 MSVLQSWEGVRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCS-DEGSKPNALL 179
Query: 180 LKLKYGPRIYQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEI 239
LKL+YGPRIYQ+ +GP++A+KFK DRY FCK++ EF+WVRTTDFS +KSIGHSTSFFWEI
Sbjct: 180 LKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEI 239
Query: 240 DEESSSLDVFQSFPLYRVSLKDLNL-DQKYSCSATETVPLVKCGPGSKLPYEDLFQLNCL 298
EES DVF+SFPLYR +LKDL+L D + CS TETVPLVKC SKLPYE LFQLN L
Sbjct: 240 VEESFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSL 299
Query: 299 VHTQKISLASVNDELIALFGSLTDETKAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRRK 358
VHTQKISLASVNDELI L SL ETKA++FQKLHK+NSTCY+PL++V TQLHVLS ++K
Sbjct: 300 VHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKK 359
Query: 359 RHLPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEE 418
LPS QKRL DNNIMSCHRALITP+KIYCLGPELETSNHVVKHFA YASDFMRITFVEE
Sbjct: 360 SVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEE 419
Query: 419 DWSKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNS 478
DWSKLP+NA+S T+ KG+FS+P +TEIYKR+L ILRDGI+IGSKRFEFLAFSASQLRSNS
Sbjct: 420 DWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNS 479
Query: 479 VWVFASNDHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIE 538
VW+FASND VKAADIREWMG FNNIRSVSKCAARMGQLFSSS+QTFE+ PQ+V++IPDIE
Sbjct: 480 VWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIE 539
Query: 539 VNSDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRK 598
+ SDG+DYCFSDGIGKIS SFARQ+A+KLKLD++RIPSAFQIRYGGYKGVIA+DRHSF+K
Sbjct: 540 ITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFKK 599
Query: 599 LSLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLG 658
LSLR SMLKFES NRMLCVTKWSESMPCFLNREIISLLSTLG+KDEALLA+Q++QL LLG
Sbjct: 600 LSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLG 659
Query: 659 RMLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRC 718
+MLTD+EAALDVLESL+G DS SILVKMLH+FYEPNSEPYLSMMLKAHYT QLSDLKSRC
Sbjct: 660 KMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRC 719
Query: 719 RICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVI 778
RI VPKGR+L+GCLDETG+LNYGQVFVR+TV KT E GD++LR VDGDDSTRIIVGKV+
Sbjct: 720 RIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKVV 779
Query: 779 VTKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISW 838
VTKNPCLHPGD+RVLDA+Y EELEE G+RDCLVFPQKGHRPHPNECSGGDLDGDLFFISW
Sbjct: 780 VTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISW 839
Query: 839 DKDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREP 898
DKDLIP +TE PMDYT RRPRIMDH VTLEEI QFFVDYMINDTLGAISTAHLVHADRE
Sbjct: 840 DKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREH 899
Query: 899 DKARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKL 958
DKA+S KCLELA+LHSMAVDFAKTGAPA MPR LKPR FPDFMERFEKPMYIS GVLGKL
Sbjct: 900 DKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGKL 959
Query: 959 YRALVESKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFY 1018
YRA ++S LQ ++V SEK A++AYD LE +GFE FLETA SH++MYA+KM +LM FY
Sbjct: 960 YRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSFY 1019
Query: 1019 GAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQA 1078
GA TEDE+LTGNLQNRASYLQRDNRRY DMKDRILISVKDLQ EAKEWFE+DCQ HEYQ
Sbjct: 1020 GATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQLEAKEWFESDCQPHEYQL 1079
Query: 1079 MASAWYHVTYHPKYYHESSSFLSFPWIVGDILLHIKSVNS 1118
MASAWYHVTYHPKYY ESS+FLSFPWIVGDILLHIKS N+
Sbjct: 1080 MASAWYHVTYHPKYYIESSTFLSFPWIVGDILLHIKSANA 1119
>Medtr1g032590.1 | RNA-directed RNA polymerase | HC |
chr1:11614495-11618760 | 20130731
Length = 1140
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/1134 (37%), Positives = 658/1134 (58%), Gaps = 53/1134 (4%)
Query: 9 TVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQFEDLATKSRA 68
T++I P + +A++++ FL+ G ++ A+EI + + S VQF D +
Sbjct: 4 TIQIHGFPSNVSAEEVMKFLEQHAGFQTVLAVEI-KHHKDGDSMTHVNVQFTDKKSVETI 62
Query: 69 LSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFVILDTWDG 128
L+L ++ L + + L + DI+ +P + + ++ ++ G +L
Sbjct: 63 LNLV-AKHLSYSGNVLNATLIKPDILSKPRIFAYNVDGVGIHFGCQTSKRKLSVLWEHSN 121
Query: 129 VQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILKLKYGPRI 188
RK+ + + + YK++I E I + S + L+ +L+ PRI
Sbjct: 122 ASVKFGARLRKMYIFFCYLSKDYKMQINSESISRIEMHRS--HCRTKKLLLFQLRSAPRI 179
Query: 189 YQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEESSSLDV 248
Y++ S+ K + K+ + W R+ DF+P IG S+S +E+ + + +
Sbjct: 180 YEKD-----VSEIK-----YFKEAYDNHWFRSVDFTPSCCIGQSSSLCFELPQNTEVPNF 229
Query: 249 FQSFPLYRVSLKDLNLDQKYSCSAT-ETVPLVKCGPGSKLPYEDLFQLNCLVHTQKISLA 307
Q + + +L+++ S+ VP+V G LPY+ LF++N LV + L
Sbjct: 230 CQYYRNFYKVDNTFDLEKQLGFSSNLNFVPMVIPPEGFNLPYKILFKINSLVQHSCLPLQ 289
Query: 308 SVNDELIALFG--SLTDETKAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRHLPSAQ 365
+++ L + + E KL+++ CYDP++++ Q S+ +
Sbjct: 290 AIDTNLFHMVDPQRIKFEYVESALNKLYQMKECCYDPVQWLEKQYQRYSTNSSIP--ISS 347
Query: 366 KRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDWSKLPS 425
D+ ++ HR +TP+KIY GPE+ SN V++++ + +F+R++FV+E+ KL S
Sbjct: 348 SISLDDGLVYVHRVKVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDENMDKLRS 407
Query: 426 NAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWVFASN 485
+ + + + ++++++R+L+ L +GI IG K+FEFLAFS+SQLR NS W+FA
Sbjct: 408 SDLLSGSSR--IDVDGESKVHQRVLSTLTNGIEIGDKKFEFLAFSSSQLRDNSAWMFAPR 465
Query: 486 DHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIEVNSDGVD 545
+ DIR+WMG F+ I++V+K AAR+GQ FSSS++T V E+EIIPDIE+ +
Sbjct: 466 TGLTTGDIRKWMGDFHEIKNVAKYAARLGQSFSSSRETVSVGRHEIEIIPDIELKRGKIK 525
Query: 546 YCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRKLSLRGSM 605
YCFSDGIGKIS A++VA+K IPSAFQIRYGGYKGV+A+D +S KLSLR SM
Sbjct: 526 YCFSDGIGKISYELAQEVAEKCGCKDHIIPSAFQIRYGGYKGVVAVDPNSSTKLSLRNSM 585
Query: 606 LKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLGRMLTDRE 665
KF+S+N L V WS++ PCFLNR++I LLSTLGVKD Q+E ++ L +
Sbjct: 586 CKFKSENTKLDVLSWSKNKPCFLNRQVIVLLSTLGVKDRIFKRKQREIVNKLKMISRKPF 645
Query: 666 AALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCRICVPKG 725
ALD++ + D +L +M+ + P +EP+LSMML+ +L +L+ + RI V KG
Sbjct: 646 NALDMMSQGTITD---MLREMIICGFNPTNEPFLSMMLRTICATKLQELQLKTRIFVRKG 702
Query: 726 RLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVIVTKNPCL 785
R ++GCLDET L YG+VFV++++ + S S + + I+ GKV+V KNPCL
Sbjct: 703 RSMLGCLDETRTLKYGEVFVQISLPRKNVMSSISS-KDIGAKKGKYIVKGKVVVAKNPCL 761
Query: 786 HPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPC 845
HPGDVR+L AI L M DC+VFPQKG RPHPNECSG DLDGD++F+ WD LIP
Sbjct: 762 HPGDVRILRAIDVPSLHH--MVDCVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPALIPP 819
Query: 846 KTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKARSSK 905
E PMD++ + +DH VTL+++++ F Y++ DTLG I+TAH V AD+EP+KA S
Sbjct: 820 HQENPMDHSPPKVMHVDHDVTLQDVEEHFTHYIVKDTLGVIATAHTVFADKEPEKAMSHS 879
Query: 906 CLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLYRALVES 965
C+ELA+LHS+AVDFAK+G PA +P+ L + +PDFME+ +KP Y SN ++GKLYR +
Sbjct: 880 CIELAKLHSIAVDFAKSGVPAEVPQHLHVKQYPDFMEKQDKPTYQSNSIIGKLYREVKNV 939
Query: 966 KLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDE 1025
Q S +++K A YD +++ +GFE + + A +K+MY K+ LM +YG ETE E
Sbjct: 940 AQQKSLKKSFTKKAANKFYDHDMKIDGFEKYTKIACEYKQMYDTKLMNLMDYYGIETEAE 999
Query: 1026 LLTGNLQNRASYLQRDNRRYTDMKDR--ILISVKDLQREAKEWFEADCQQHEYQ------ 1077
+++GN+ + + + D KD+ I +V L+ EA+ WF ++ Q
Sbjct: 1000 IISGNILKMS-------KSFNDRKDKEGINHAVMSLRNEARSWFSEMIRKSNSQGGGGDD 1052
Query: 1078 ---AMASAWYHVTYHPKY---YHES---SSFLSFPWIVGDILLHIK--SVNSKV 1120
A+ASAWYHVTYHP Y Y+E FLSFPW V D L+ IK NS++
Sbjct: 1053 DSYAIASAWYHVTYHPSYWGCYNEGLNKDHFLSFPWCVHDTLIQIKKDKTNSRI 1106
>Medtr1g032630.3 | RNA-directed RNA polymerase | HC |
chr1:11634851-11640459 | 20130731
Length = 1114
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/1133 (38%), Positives = 659/1133 (58%), Gaps = 62/1133 (5%)
Query: 9 TVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQFEDLATKSRA 68
T+ ++ P + F++ G S+ A++I K R +QF +
Sbjct: 6 TIELYGFPSFVNVSQVKIFVEHYTGEGSVVAMKIRVGNGRVK-RAFAIIQFTTAKHATFM 64
Query: 69 LSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFVILDTWDG 128
++L KL F +L++ E DI P+P L++ L G + + F L D
Sbjct: 65 MALPSRTKLRFGDSYLKVRELERDIDPKPRAFLDSLDDVKLYFGCQISKERFSKLWKVDA 124
Query: 129 VQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILKLKYGPRI 188
+ + RK F + + + +KLE+ +E+I + + GK L+++L PR+
Sbjct: 125 SVDFGIG-MRKWRFSMHHENKKFKLELSYENIWKIELHQP--QGKTAKYLLIQLIGAPRV 181
Query: 189 YQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEESSSLDV 248
++ + P S +K ++ +D + W+R DF+P IG S++ E+ SS+ D
Sbjct: 182 FE-CNVPTSTSVYKDPLKNYYRDSPDDQWIRAIDFTPCNCIGQSSAICLEL---SSNRD- 236
Query: 249 FQSFPLYRVSLKD------LNLDQKYSCSATETVPLVKCGPGSKLPYEDLFQLNCLVHTQ 302
F +F V ++ L +SC+ + VP+V G ++P++ LF++N LV
Sbjct: 237 FPNFKENCVHYEEIEGQYTLESGSSFSCNP-DVVPMVAPPQGIQIPFDILFKVNSLVQHG 295
Query: 303 KISLASVNDELIALFGSLTDETKAM--VFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRH 360
+S + ++++ L L + + +K++ CY+P ++ Q R +
Sbjct: 296 CLSGSELDNDFYRLVDPLGINVELIKHALEKMYYSKDFCYEPARWLKGQYR--RYLRANN 353
Query: 361 LPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDW 420
P + DN ++ R ITP K+Y GPE+ SN V++HF Q+ +F+R++FV+E+
Sbjct: 354 PPRSPTISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEEL 413
Query: 421 SKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVW 480
+ S +S+ + S+ +TEIY RIL+ILR+GI IG +FEFLAFS+SQLR NS+W
Sbjct: 414 DNMYSADLSSRI-----SENGRTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLW 468
Query: 481 VFASNDHVKAAD-IREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIEV 539
+FA AD IREWMG F+ I++V+K AAR+GQ F SS +T V E+EIIPD +V
Sbjct: 469 MFARTTTGLTADSIREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVRRNEIEIIPDAKV 528
Query: 540 NSDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRKL 599
+Y FSDGIGKISL AR+VA+K D +PSAFQIRYGGYKGV+A+D S KL
Sbjct: 529 KHGATEYVFSDGIGKISLELARRVAKKCGHDS--VPSAFQIRYGGYKGVVAVDPTSSVKL 586
Query: 600 SLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLGR 659
SLR SM K++SDN L V S+ PC+LNR++I+LL TL VKD Q+E + L
Sbjct: 587 SLRKSMHKYDSDNIKLDVLACSKFQPCYLNRQLITLLCTLDVKDSVFEKKQKEAVTQLNT 646
Query: 660 MLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCR 719
+LTD A +VL+ + + +IL +ML Y+P+ EP+LSMML+ +L +L+ + R
Sbjct: 647 ILTDSTKAHEVLDLMCSGEVTNILKEMLICGYKPDVEPFLSMMLQTFRASKLLELRQKTR 706
Query: 720 ICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVIV 779
I +PKGR ++G LDET L YG+VFV+ + N+ +S R++ G VIV
Sbjct: 707 IFIPKGRAMMGVLDETRTLEYGEVFVQYSSNRFSSHS--------------RVVKGMVIV 752
Query: 780 TKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWD 839
KNPCLHPGDVRVL A+ L M DC+VFPQKGHRPHPNECSG DLDGD++F+ WD
Sbjct: 753 AKNPCLHPGDVRVLKAVDVPALRH--MVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWD 810
Query: 840 KDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPD 899
+LIP T +PM+Y + +P ++DH V +EE++++F +Y++ND+LG I+ AH V AD+EP
Sbjct: 811 SELIPPLTIDPMEYDSAQPIVLDHDVEIEEVEEYFTNYILNDSLGIIANAHTVFADKEPA 870
Query: 900 KARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLY 959
KA S C+ELA+L S+AVDF KTG PA +PR L + +PDFME+ +K Y S+ V+GKL+
Sbjct: 871 KAMSEPCIELAKLFSIAVDFPKTGIPAVIPRELFAKEYPDFMEKADKTTYKSDNVIGKLF 930
Query: 960 RALVESKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYG 1019
R + + S ++ ++A+ +YD ++E +GF +++ A +K Y EK+ LM +YG
Sbjct: 931 REIQGISTKDGSITSFTLEVAKKSYDPDMEVDGFMDYVDDAFYYKSNYDEKLGNLMDYYG 990
Query: 1020 AETEDELLTGNLQNRA-SYLQRDNRRYTDMKDRILISVKDLQREAKEWFE-----ADCQQ 1073
+TE E+L+GN+ A S+ +R + D I ++V+ L++EA+ WF D
Sbjct: 991 IKTESEILSGNIMKMAKSFTKRRD------ADAITMAVRSLRKEARSWFNDGSASVDSGS 1044
Query: 1074 HEYQAMASAWYHVTYHPKYY------HESSSFLSFPWIVGDILLHIKSVNSKV 1120
+ A ASAWY+VTYH YY + FLSFPW V +L+ IK +++
Sbjct: 1045 DDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWCVYHLLVQIKKEKARM 1097
>Medtr1g032630.1 | RNA-directed RNA polymerase | HC |
chr1:11634851-11640459 | 20130731
Length = 1114
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/1133 (38%), Positives = 659/1133 (58%), Gaps = 62/1133 (5%)
Query: 9 TVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQFEDLATKSRA 68
T+ ++ P + F++ G S+ A++I K R +QF +
Sbjct: 6 TIELYGFPSFVNVSQVKIFVEHYTGEGSVVAMKIRVGNGRVK-RAFAIIQFTTAKHATFM 64
Query: 69 LSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFVILDTWDG 128
++L KL F +L++ E DI P+P L++ L G + + F L D
Sbjct: 65 MALPSRTKLRFGDSYLKVRELERDIDPKPRAFLDSLDDVKLYFGCQISKERFSKLWKVDA 124
Query: 129 VQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILKLKYGPRI 188
+ + RK F + + + +KLE+ +E+I + + GK L+++L PR+
Sbjct: 125 SVDFGIG-MRKWRFSMHHENKKFKLELSYENIWKIELHQP--QGKTAKYLLIQLIGAPRV 181
Query: 189 YQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEESSSLDV 248
++ + P S +K ++ +D + W+R DF+P IG S++ E+ SS+ D
Sbjct: 182 FE-CNVPTSTSVYKDPLKNYYRDSPDDQWIRAIDFTPCNCIGQSSAICLEL---SSNRD- 236
Query: 249 FQSFPLYRVSLKD------LNLDQKYSCSATETVPLVKCGPGSKLPYEDLFQLNCLVHTQ 302
F +F V ++ L +SC+ + VP+V G ++P++ LF++N LV
Sbjct: 237 FPNFKENCVHYEEIEGQYTLESGSSFSCNP-DVVPMVAPPQGIQIPFDILFKVNSLVQHG 295
Query: 303 KISLASVNDELIALFGSLTDETKAM--VFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRH 360
+S + ++++ L L + + +K++ CY+P ++ Q R +
Sbjct: 296 CLSGSELDNDFYRLVDPLGINVELIKHALEKMYYSKDFCYEPARWLKGQYR--RYLRANN 353
Query: 361 LPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDW 420
P + DN ++ R ITP K+Y GPE+ SN V++HF Q+ +F+R++FV+E+
Sbjct: 354 PPRSPTISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEEL 413
Query: 421 SKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVW 480
+ S +S+ + S+ +TEIY RIL+ILR+GI IG +FEFLAFS+SQLR NS+W
Sbjct: 414 DNMYSADLSSRI-----SENGRTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLW 468
Query: 481 VFASNDHVKAAD-IREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIEV 539
+FA AD IREWMG F+ I++V+K AAR+GQ F SS +T V E+EIIPD +V
Sbjct: 469 MFARTTTGLTADSIREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVRRNEIEIIPDAKV 528
Query: 540 NSDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRKL 599
+Y FSDGIGKISL AR+VA+K D +PSAFQIRYGGYKGV+A+D S KL
Sbjct: 529 KHGATEYVFSDGIGKISLELARRVAKKCGHDS--VPSAFQIRYGGYKGVVAVDPTSSVKL 586
Query: 600 SLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLGR 659
SLR SM K++SDN L V S+ PC+LNR++I+LL TL VKD Q+E + L
Sbjct: 587 SLRKSMHKYDSDNIKLDVLACSKFQPCYLNRQLITLLCTLDVKDSVFEKKQKEAVTQLNT 646
Query: 660 MLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCR 719
+LTD A +VL+ + + +IL +ML Y+P+ EP+LSMML+ +L +L+ + R
Sbjct: 647 ILTDSTKAHEVLDLMCSGEVTNILKEMLICGYKPDVEPFLSMMLQTFRASKLLELRQKTR 706
Query: 720 ICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVIV 779
I +PKGR ++G LDET L YG+VFV+ + N+ +S R++ G VIV
Sbjct: 707 IFIPKGRAMMGVLDETRTLEYGEVFVQYSSNRFSSHS--------------RVVKGMVIV 752
Query: 780 TKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWD 839
KNPCLHPGDVRVL A+ L M DC+VFPQKGHRPHPNECSG DLDGD++F+ WD
Sbjct: 753 AKNPCLHPGDVRVLKAVDVPALRH--MVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWD 810
Query: 840 KDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPD 899
+LIP T +PM+Y + +P ++DH V +EE++++F +Y++ND+LG I+ AH V AD+EP
Sbjct: 811 SELIPPLTIDPMEYDSAQPIVLDHDVEIEEVEEYFTNYILNDSLGIIANAHTVFADKEPA 870
Query: 900 KARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLY 959
KA S C+ELA+L S+AVDF KTG PA +PR L + +PDFME+ +K Y S+ V+GKL+
Sbjct: 871 KAMSEPCIELAKLFSIAVDFPKTGIPAVIPRELFAKEYPDFMEKADKTTYKSDNVIGKLF 930
Query: 960 RALVESKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYG 1019
R + + S ++ ++A+ +YD ++E +GF +++ A +K Y EK+ LM +YG
Sbjct: 931 REIQGISTKDGSITSFTLEVAKKSYDPDMEVDGFMDYVDDAFYYKSNYDEKLGNLMDYYG 990
Query: 1020 AETEDELLTGNLQNRA-SYLQRDNRRYTDMKDRILISVKDLQREAKEWFE-----ADCQQ 1073
+TE E+L+GN+ A S+ +R + D I ++V+ L++EA+ WF D
Sbjct: 991 IKTESEILSGNIMKMAKSFTKRRD------ADAITMAVRSLRKEARSWFNDGSASVDSGS 1044
Query: 1074 HEYQAMASAWYHVTYHPKYY------HESSSFLSFPWIVGDILLHIKSVNSKV 1120
+ A ASAWY+VTYH YY + FLSFPW V +L+ IK +++
Sbjct: 1045 DDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWCVYHLLVQIKKEKARM 1097
>Medtr1g032610.1 | RNA-directed RNA polymerase | HC |
chr1:11626089-11631992 | 20130731
Length = 1117
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1136 (38%), Positives = 661/1136 (58%), Gaps = 65/1136 (5%)
Query: 9 TVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQF--EDLATKS 66
T+ ++ P T D+ F++ G S+ A++I + ++ +QF +D T
Sbjct: 6 TIELYGFPHYVTVPDVKRFVEQYTGEGSVVAIKIREGKARIRT-AFAIIQFTTKDHVTDM 64
Query: 67 RALSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFVILDTW 126
AL L + S +L++ E DI+ RP H LN+ L + + +L
Sbjct: 65 MALPSRSLSPLQYGSSYLKVREMERDIVRRPREILHSLNDVKLYFCCQISEERLSVLWRE 124
Query: 127 DGVQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILKLKYGP 186
V+ RK F + + +KLE+ +E+I + + K L+++L P
Sbjct: 125 VDVRVDFGIGMRKWRFTLCHDNKTFKLELSYENIWKIELHQP--RSKTTKYLLIQLIGAP 182
Query: 187 RIYQRKS--GPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEESS 244
R+++ S D + ++ ++ D + W+R DF+P IG S++ E+
Sbjct: 183 RVFELYSPTSDDAYNVYEDLSKNYFSDPPDDQWIRAVDFTPCSCIGQSSALCLELPSNRD 242
Query: 245 SLDVFQSFPLYRVSLKDLNLDQ--KYSCSATETVPLVKCGPGSKLPYEDLFQLNCLVHTQ 302
+ ++F Y S L+ +SC+ + VP+V G ++P++ LF++N LV
Sbjct: 243 FPNFRENFAQYEESAGPYMLESGSPFSCN-LDVVPMVSPPQGIQIPFDILFKVNSLVQHG 301
Query: 303 KISLASVNDELIALFGSLTDETKAMV------FQKLHKLNSTCYDPLEFVNTQLHVLSSR 356
+S EL F L D T+ V +K++ N CY+P+ ++ Q + S
Sbjct: 302 CLS----GSELDNAFYHLVDPTRVNVELIENALEKMYYSNDFCYEPVRWLKDQYKMYHS- 356
Query: 357 RKRHLPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFV 416
+LP + DN ++ RA ITP K+Y GPE+ SN V++ + ++ +F+R++FV
Sbjct: 357 -SNNLPRSPTISLDNGLVYVRRAQITPCKVYFCGPEINVSNRVLRKYKKHMDNFLRVSFV 415
Query: 417 EEDWSKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRS 476
+E+ KL S+ +S+ + G +T+IY RIL+ILR+GIVIG K+FEFLAFS+SQLR
Sbjct: 416 DEELDKLYSSDLSSRISVG-----GRTDIYYRILSILRNGIVIGDKKFEFLAFSSSQLRE 470
Query: 477 NSVWVFA-SNDHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIP 535
+S+W+FA + A IREWMG F+ I++V+K AAR+GQ F SS +T V E+EII
Sbjct: 471 SSLWMFARTPTGDTAGSIREWMGDFSRIKNVAKYAARLGQSFGSSTETTTVSSTEIEIIL 530
Query: 536 DIEVNSDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHS 595
D+ + Y FSDGIGKISL AR+VAQK D +PSAFQIRYGGYKGV+A+D S
Sbjct: 531 DVH---NKTKYVFSDGIGKISLELARRVAQKCGYDS--MPSAFQIRYGGYKGVVAVDPTS 585
Query: 596 FRKLSLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLH 655
KLSLR SMLK++SDN L V S+ PC+LNR++I+LLSTL V+D Q+E +
Sbjct: 586 SVKLSLRMSMLKYDSDNTDLDVLACSKFRPCYLNRQLITLLSTLDVEDSVFEKKQKEAVD 645
Query: 656 LLGRMLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLK 715
L +LTD A +VL+ +S + +IL +ML Y+PN EP+LSMML+ +L +L+
Sbjct: 646 QLNTILTDSTKAHEVLDLMSSGEVTNILKEMLICGYKPNVEPFLSMMLQTFRASKLLELR 705
Query: 716 SRCRICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVG 775
+ RI +PKGR ++G LDET L YG+VFV+ + N+ +DSL + ++ G
Sbjct: 706 QKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSNNR------EDSL--------SHVVNG 751
Query: 776 KVIVTKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFF 835
KV+V KNPCL+PGDVRVL A+ L M DC+VFPQKGHRPHPNECSG DLDGD++F
Sbjct: 752 KVVVAKNPCLYPGDVRVLKAVDVPALRH--MVDCVVFPQKGHRPHPNECSGSDLDGDIYF 809
Query: 836 ISWDKDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHAD 895
+ WD +LIP KT +PM+Y + +P ++DH V +EE+Q++F DY++ND LG I+ AH V AD
Sbjct: 810 VCWDSELIPPKTIDPMEYDSAKPIVLDHDVEIEEVQKYFTDYILNDCLGIIANAHTVFAD 869
Query: 896 REPDKARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVL 955
+EP KA + C+ELA+L S AVDF KTG PA +PR L P +PDFME+ +KP+Y S V+
Sbjct: 870 KEPGKAMADPCVELAKLFSTAVDFPKTGIPAEIPRGLFPTEYPDFMEKPDKPIYKSKNVI 929
Query: 956 GKLYRALVESKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALM 1015
GKL+R + + S ++ ++A+++YD ++E GF +++ A HK Y K+ LM
Sbjct: 930 GKLFREIQGISTKDGSITSFTLEVAKESYDSDMEFEGFMDYVDDAFYHKTNYDYKLGNLM 989
Query: 1016 KFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILISVKDLQREAKEWFE-----AD 1070
+YG +TE E+L+GN+ + + D I ++V+ L++EA+ WF D
Sbjct: 990 DYYGIKTEAEILSGNIMKMSKSFTKKRD-----ADAITMAVRSLRKEARSWFTDSGAGVD 1044
Query: 1071 CQQHEYQAMASAWYHVTYHPKYY------HESSSFLSFPWIVGDILLHIKSVNSKV 1120
+ A ASAWY+VTYH YY + FLSFPW V +L+ IK +++
Sbjct: 1045 SGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWCVYHLLVQIKKEKARM 1100
>Medtr1g032610.2 | RNA-directed RNA polymerase | HC |
chr1:11626089-11631992 | 20130731
Length = 1054
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/1081 (39%), Positives = 639/1081 (59%), Gaps = 67/1081 (6%)
Query: 62 LATKSRALSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFV 121
+A SR+LS L + S +L++ E DI+ RP H LN+ L + +
Sbjct: 2 MALPSRSLS-----PLQYGSSYLKVREMERDIVRRPREILHSLNDVKLYFCCQISEERLS 56
Query: 122 ILDTWDGVQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILK 181
+L V+ RK F + + +KLE+ +E+I + + K L+++
Sbjct: 57 VLWREVDVRVDFGIGMRKWRFTLCHDNKTFKLELSYENIWKIELHQP--RSKTTKYLLIQ 114
Query: 182 LKYGPRIYQRKS--GPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEI 239
L PR+++ S D + ++ ++ D + W+R DF+P IG S++ E+
Sbjct: 115 LIGAPRVFELYSPTSDDAYNVYEDLSKNYFSDPPDDQWIRAVDFTPCSCIGQSSALCLEL 174
Query: 240 DEESSSLDVFQSFPLYRVSLKDLNLDQ--KYSCSATETVPLVKCGPGSKLPYEDLFQLNC 297
+ ++F Y S L+ +SC+ + VP+V G ++P++ LF++N
Sbjct: 175 PSNRDFPNFRENFAQYEESAGPYMLESGSPFSCN-LDVVPMVSPPQGIQIPFDILFKVNS 233
Query: 298 LVHTQKISLASVNDELIALFGSLTDETKAMV------FQKLHKLNSTCYDPLEFVNTQLH 351
LV +S EL F L D T+ V +K++ N CY+P+ ++ Q
Sbjct: 234 LVQHGCLS----GSELDNAFYHLVDPTRVNVELIENALEKMYYSNDFCYEPVRWLKDQYK 289
Query: 352 VLSSRRKRHLPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFM 411
+ S +LP + DN ++ RA ITP K+Y GPE+ SN V++ + ++ +F+
Sbjct: 290 MYHS--SNNLPRSPTISLDNGLVYVRRAQITPCKVYFCGPEINVSNRVLRKYKKHMDNFL 347
Query: 412 RITFVEEDWSKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSA 471
R++FV+E+ KL S+ +S+ + G +T+IY RIL+ILR+GIVIG K+FEFLAFS+
Sbjct: 348 RVSFVDEELDKLYSSDLSSRISVG-----GRTDIYYRILSILRNGIVIGDKKFEFLAFSS 402
Query: 472 SQLRSNSVWVFA-SNDHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQE 530
SQLR +S+W+FA + A IREWMG F+ I++V+K AAR+GQ F SS +T V E
Sbjct: 403 SQLRESSLWMFARTPTGDTAGSIREWMGDFSRIKNVAKYAARLGQSFGSSTETTTVSSTE 462
Query: 531 VEIIPDIEVNSDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIA 590
+EII D+ + Y FSDGIGKISL AR+VAQK D +PSAFQIRYGGYKGV+A
Sbjct: 463 IEIILDVH---NKTKYVFSDGIGKISLELARRVAQKCGYDS--MPSAFQIRYGGYKGVVA 517
Query: 591 LDRHSFRKLSLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQ 650
+D S KLSLR SMLK++SDN L V S+ PC+LNR++I+LLSTL V+D Q
Sbjct: 518 VDPTSSVKLSLRMSMLKYDSDNTDLDVLACSKFRPCYLNRQLITLLSTLDVEDSVFEKKQ 577
Query: 651 QEQLHLLGRMLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQ 710
+E + L +LTD A +VL+ +S + +IL +ML Y+PN EP+LSMML+ +
Sbjct: 578 KEAVDQLNTILTDSTKAHEVLDLMSSGEVTNILKEMLICGYKPNVEPFLSMMLQTFRASK 637
Query: 711 LSDLKSRCRICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDST 770
L +L+ + RI +PKGR ++G LDET L YG+VFV+ + N+ +DSL +
Sbjct: 638 LLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSNNR------EDSL--------S 683
Query: 771 RIIVGKVIVTKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLD 830
++ GKV+V KNPCL+PGDVRVL A+ L M DC+VFPQKGHRPHPNECSG DLD
Sbjct: 684 HVVNGKVVVAKNPCLYPGDVRVLKAVDVPALRH--MVDCVVFPQKGHRPHPNECSGSDLD 741
Query: 831 GDLFFISWDKDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAH 890
GD++F+ WD +LIP KT +PM+Y + +P ++DH V +EE+Q++F DY++ND LG I+ AH
Sbjct: 742 GDIYFVCWDSELIPPKTIDPMEYDSAKPIVLDHDVEIEEVQKYFTDYILNDCLGIIANAH 801
Query: 891 LVHADREPDKARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYI 950
V AD+EP KA + C+ELA+L S AVDF KTG PA +PR L P +PDFME+ +KP+Y
Sbjct: 802 TVFADKEPGKAMADPCVELAKLFSTAVDFPKTGIPAEIPRGLFPTEYPDFMEKPDKPIYK 861
Query: 951 SNGVLGKLYRALVESKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEK 1010
S V+GKL+R + + S ++ ++A+++YD ++E GF +++ A HK Y K
Sbjct: 862 SKNVIGKLFREIQGISTKDGSITSFTLEVAKESYDSDMEFEGFMDYVDDAFYHKTNYDYK 921
Query: 1011 MTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILISVKDLQREAKEWFE-- 1068
+ LM +YG +TE E+L+GN+ + + D I ++V+ L++EA+ WF
Sbjct: 922 LGNLMDYYGIKTEAEILSGNIMKMSKSFTKKRD-----ADAITMAVRSLRKEARSWFTDS 976
Query: 1069 ---ADCQQHEYQAMASAWYHVTYHPKYY------HESSSFLSFPWIVGDILLHIKSVNSK 1119
D + A ASAWY+VTYH YY + FLSFPW V +L+ IK ++
Sbjct: 977 GAGVDSGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWCVYHLLVQIKKEKAR 1036
Query: 1120 V 1120
+
Sbjct: 1037 M 1037
>Medtr1g032720.1 | RNA-directed RNA polymerase | LC |
chr1:11690971-11682431 | 20130731
Length = 1726
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/1124 (37%), Positives = 647/1124 (57%), Gaps = 53/1124 (4%)
Query: 9 TVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQFEDL--ATKS 66
T+ + P T D+ +F++ G S+ A++I + + R +QF AT
Sbjct: 615 TIELSGFPCYETVYDVKSFVEHYTGEGSVVAMKIREGKGHVR-RAFAIIQFTTAKHATYM 673
Query: 67 RALSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFVILDTW 126
LS + + L++ E DI PRP L++ L+ G + + F L
Sbjct: 674 MTLSNISLPTWRYGGYDLKVREMERDINPRPRAFLESLDDVKLHFGCQISKERFSALWRE 733
Query: 127 DGVQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILKLKYGP 186
V RK F + + +KLE+ +E+I + + GK L+++L P
Sbjct: 734 VDVSVEFGIGMRKWRFSMRHHDKKFKLELSYENIGKIELHRP--RGKTAKYLLIQLIGAP 791
Query: 187 RIYQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEESSSL 246
++++ P+ + ++ ++ KD + W R+ DF+P IGHS++ E+
Sbjct: 792 QVFELYI-PNSKNVYEDPAKNYYKDSPDEQWTRSIDFTPFSCIGHSSALCIELPSNRDFP 850
Query: 247 DVFQSFPLYRVSLKDLNLDQKYSCSAT-ETVPLVKCGPGSKLPYEDLFQLNCLVHTQKIS 305
+ ++F Y + L++ S + VP+V G +P++ +F++N LV +S
Sbjct: 851 NFRENFAHYEEIEGNYTLERGLPFSRNLDVVPIVAPPRGINIPFDIMFKVNALVQHGCLS 910
Query: 306 LASVNDELIALFGSL--TDETKAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRHLPS 363
+ ++++ L L T + +K++ CY+P ++ Q + + +LP
Sbjct: 911 GSELDNDFYRLVDPLKMTSDCVEHALEKMYYSKDFCYEPARWLKDQYKMYI--KSNYLPP 968
Query: 364 AQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDWSKL 423
+ D+ ++ R ITP+K+Y GPE+ SN V++ F ++ +F+R++FV+E KL
Sbjct: 969 SPTISLDDGLVYVRRVQITPSKVYFCGPEINVSNRVLRRFHKHIDNFLRVSFVDEGLDKL 1028
Query: 424 PSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWVFA 483
S +S+ + S+ +T+IY RIL+ILR+GI IG K+FEFLAFS+SQLR NS+W+F+
Sbjct: 1029 YSADLSSHI-----SESGRTKIYYRILSILRNGIDIGGKKFEFLAFSSSQLRENSLWMFS 1083
Query: 484 SNDHVKAAD-IREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIEVNSD 542
AD IREWMG F+ I++V+K AAR+GQ F SS +T V E+E I D++V
Sbjct: 1084 PTTTGLTADSIREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVSRNEIETISDVKVKHG 1143
Query: 543 GVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRKLSLR 602
Y FSDGIGKIS+ AR+VA+K D +PSAFQIRY G+KGV+A+D S KLSLR
Sbjct: 1144 ATKYVFSDGIGKISIELARRVAKKCGHDS--MPSAFQIRYCGFKGVVAVDPTSSLKLSLR 1201
Query: 603 GSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLGRMLT 662
SM K++SDN L V S+ PC+LNR++I+LLSTL VKD Q++ ++ L +LT
Sbjct: 1202 KSMHKYDSDNIKLDVLACSKFQPCYLNRQLITLLSTLDVKDSVFEKKQRKVVNQLNTILT 1261
Query: 663 DREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCRICV 722
D A +VL+ + + +IL ML Y+PN EP+LSMML+ +L +L+ R RI +
Sbjct: 1262 DSMKAHEVLDLMFSGEVANILKDMLICGYKPNIEPFLSMMLQTFRASKLLELRQRTRIFI 1321
Query: 723 PKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVIVTKN 782
PKGR ++G LDET L YG+VFV+ + NK + + ++ GKV+V KN
Sbjct: 1322 PKGRTMMGVLDETRTLEYGEVFVQYS-NKRLSGL-------------SHVVKGKVVVAKN 1367
Query: 783 PCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDL 842
PCLHPGDVRVL A+ L M DC+VFPQKGHRPHPNECSG DLDGD++F+ WD +L
Sbjct: 1368 PCLHPGDVRVLKAVDVPALRH--MVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDSEL 1425
Query: 843 IPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKAR 902
IP +T EPM+Y + +P ++DH V +EE++++F +Y++ND+LG I+ AH+V AD+EP KA
Sbjct: 1426 IPPRTIEPMEYDSAQPTVLDHDVEIEEVEEYFTNYILNDSLGIIANAHIVFADKEPGKAM 1485
Query: 903 SSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLYRAL 962
+ C+ELA+L S+AVDF KTG PA +P L + +PDFME+ +K Y S V+GKL+R +
Sbjct: 1486 AEPCIELAKLFSVAVDFPKTGIPAVIPPHLFAKEYPDFMEKPDKTTYKSKNVIGKLFREI 1545
Query: 963 VESKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAET 1022
S ++ ++A++++D ++E GF + + A HK Y K+ LM +YG +T
Sbjct: 1546 QGISTNDGSITSFTLEVAKESHDPDMEFVGFMDYADDAFYHKTNYDYKLGNLMDYYGIKT 1605
Query: 1023 EDELLTGNLQNRA-SYLQRDNRRYTDMKDRILISVKDLQREAKEWFE-----ADCQQHEY 1076
E E+++GN+ + S+ +R + D I +++K L++EA+ WF AD
Sbjct: 1606 ESEIISGNIMKMSKSFTKRRD------ADAIAMAIKSLRKEARSWFNEDNTGADSGSDCP 1659
Query: 1077 QAMASAWYHVTYHPKYY------HESSSFLSFPWIVGDILLHIK 1114
A ASAWY VTYH YY + FLSFPW V +L+ IK
Sbjct: 1660 YAKASAWYFVTYHHSYYGLYNEGMQRDHFLSFPWCVYHLLVQIK 1703
Score = 295 bits (754), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 199/605 (32%), Positives = 322/605 (53%), Gaps = 19/605 (3%)
Query: 9 TVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQFEDL--ATKS 66
T+ + P T D+ +F++ G S+ A++I + + R +QF AT
Sbjct: 6 TIELSGFPCYETVYDVKSFVEHYTGEGSVVAMKIREGKGHVR-RTFAIIQFTTAKHATYM 64
Query: 67 RALSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFVILDTW 126
LS + + L++ E DI PRP L++ L+ G + + F L
Sbjct: 65 MTLSNISLPTWRYGGYDLKVREMERDINPRPRAFLESLDDVKLHFGCQISKERFSALWRE 124
Query: 127 DGVQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILKLKYGP 186
V RK F + + +KLE+ +E+I + + GK L+++L P
Sbjct: 125 VDVSVEFGIGMRKWRFSMRHHDKKFKLELSYENIGKIELHRP--RGKTAKYLLIQLIGAP 182
Query: 187 RIYQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEESSSL 246
++++ P+ + ++ ++ KD + W R+ DF+P IGHS++ E+
Sbjct: 183 QVFELYI-PNSKNVYEDPAKNYYKDSPDEQWTRSIDFTPFSCIGHSSALCIELPSNRDFP 241
Query: 247 DVFQSFPLYRVSLKDLNLDQKYSCSAT-ETVPLVKCGPGSKLPYEDLFQLNCLVHTQKIS 305
+ ++F Y + L++ S + VP+V G +P++ +F++N LV +S
Sbjct: 242 NFRENFAHYEEIEGNYTLERGLPFSRNLDVVPIVAPPRGINIPFDIMFKVNALVQHGCLS 301
Query: 306 LASVNDELIALFGSL--TDETKAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRHLPS 363
+ ++++ L L T + +K++ CY+P ++ Q + + +LP
Sbjct: 302 GSELDNDFYRLVDPLKMTSDCVEHALEKMYYSKDFCYEPARWLKDQYKMYI--KSNYLPP 359
Query: 364 AQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDWSKL 423
+ D+ ++ R ITP+K+Y GPE+ SN V++ F ++ +F+R++FV+E KL
Sbjct: 360 SPTISLDDGLVYVRRVQITPSKVYFCGPEINVSNRVLRRFHKHIDNFLRVSFVDEGLDKL 419
Query: 424 PSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWVFA 483
S +S+ + S+ +T+IY RIL+ILR+GI IG K+FEFLAFS+SQLR NS+W+F+
Sbjct: 420 YSADLSSHI-----SESGRTKIYYRILSILRNGIDIGGKKFEFLAFSSSQLRENSLWMFS 474
Query: 484 SNDHVKAAD-IREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIEVNSD 542
AD IREWMG F+ I++V+K AAR+GQ F SS +T V E+E I D++V
Sbjct: 475 PTTTGLTADSIREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVSRNEIETISDVKVKHG 534
Query: 543 GVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRKLSLR 602
Y FSDGIGKIS+ AR+VA+K D +PSAFQIRYGG+KGV+A+D S KLSLR
Sbjct: 535 ATKYVFSDGIGKISIELARRVAKKCGHDS--MPSAFQIRYGGFKGVVAVDPTSSLKLSLR 592
Query: 603 GSMLK 607
SM K
Sbjct: 593 KSMHK 597
>Medtr3g107390.2 | RNA-dependent RNA polymerase family protein | HC |
chr3:49541314-49536090 | 20130731
Length = 1203
Score = 562 bits (1449), Expect = e-160, Method: Compositional matrix adjust.
Identities = 406/1210 (33%), Positives = 609/1210 (50%), Gaps = 142/1210 (11%)
Query: 10 VRIFNIPQSATAKDLLAFLKSTFG------------PSSIYA---------LEIFSDYSN 48
V I A DL+++L+S G P Y +EI DY
Sbjct: 17 VSIGGFDSDVKASDLVSYLESKIGYVDRCRLKTSCTPPESYPEFTMTDTKQIEITDDYKK 76
Query: 49 WKSRGSGRVQFEDLATKSRALSLAESQKLIFKSHFLRLSENSDDIIPRPP--LPQHR--- 103
D AT+ AL+ A LI L++ P+ P L Q R
Sbjct: 77 VAPHAFVHFTLPDSATE--ALNAAGRCDLILNGKVLKVISG-----PQNPNFLNQRRRTE 129
Query: 104 ----LNNTILNAGFTVGPDDFVILDTW----DGVQGWIMPERR--KLEF----WVWFQG- 148
+++ I+ G V P DF + W GV + P + K+ F F+G
Sbjct: 130 APFKMSDVIVEIGTLVSPADFTV--AWRGCDKGVNFLVDPFDKICKICFNRDTAFSFKGI 187
Query: 149 ------EC-YKLEIPFEDILETVGYASGDDGKPPDALILKLKYGPRIYQRKSGPDIASKF 201
+C +K+ DI E Y D ++L+L P ++ R + DI
Sbjct: 188 GKQAVIKCDFKVGFLIRDIEEIQRY----DDTSHLVVLLRLASSPLVWYRTADDDIDESV 243
Query: 202 KADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEE-----SSSLDVFQSFPLYR 256
D DD W+RTTDF+P +IG + I + +L+ + + R
Sbjct: 244 TID---LLDDDDP--WIRTTDFTPSGAIGRCNYYRISIPPRHGAKLNKALEYLRRQRVPR 298
Query: 257 VSLKDLNLDQKYSCSATETVPLVKC----GPGSKLPYEDLFQLNCLVHTQKISLASVNDE 312
+ LK K VP+ + ++ +F +N +VH + S++++
Sbjct: 299 IPLK---RPPKIQNEPDFGVPMSDAFFYIDSQKDISFDIMFLINAIVHRGIFNQYSLSNK 355
Query: 313 LIALFGSLTDETKAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRHLPSAQKRLADNN 372
L + + + + +D + + L K + S Q ++
Sbjct: 356 FFELLKNQPKDVNVAALKHICTYKHPVFDAAKRLEAVQKWLLRNPKFYQISKQS----DD 411
Query: 373 IMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDWSKLPSNAVSTTV 432
+M R ++TPTK YC+ PE+E SN V++ F + + F+R+TF++E L + A++ V
Sbjct: 412 VMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDEGQQTLNNYALNYYV 471
Query: 433 H---KGIFSKPF--KTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWVFASNDH 487
K I S F KT IYKR+ TIL DG +++ FLAFS++QLR S W FA +
Sbjct: 472 APIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKD 531
Query: 488 VKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVE-IIPDIEVNSDGVDY 546
+ DIR WMG FN ++V+KCAARMGQ FSS+ + EV EV ++PD+E N +Y
Sbjct: 532 ITCDDIRNWMGRFNQ-KNVAKCAARMGQCFSSTYASVEVPANEVNSMLPDVERN----NY 586
Query: 547 CFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIAL--DRHSFRKLSLRGS 604
FSDGIG I+ A +VA+KLKLD++ PSA+QIRY G+KGV+A + KLSLR S
Sbjct: 587 VFSDGIGIITTDLAVEVAEKLKLDKA--PSAYQIRYAGFKGVVACWPAKGDGIKLSLRPS 644
Query: 605 MLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLGRMLTDR 664
M KF+S + L + W+ P FLNR+II+LLS L V DE MQ+ + L +ML DR
Sbjct: 645 MNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIFWKMQEGMISSLNQMLVDR 704
Query: 665 EAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCRICVPK 724
+ A DVL + S + + ML + P +EP+L ML + QL L+ + RI V
Sbjct: 705 DVAYDVL-TKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSS 763
Query: 725 GRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVIVTKNPC 784
GR L+G LDE G+L GQ FV+V+ ++EN + + ++ G V++ KNPC
Sbjct: 764 GRWLMGVLDELGVLEQGQCFVQVST-PSLENCFSKHGSRFSETKTVHVVKGIVVIAKNPC 822
Query: 785 LHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIP 844
LHPGDVRVL+A+ +L + DC+VFPQKG RPH +E SG DLDGDL+F++WD +LIP
Sbjct: 823 LHPGDVRVLEAVDVPDLHH--LYDCVVFPQKGERPHTDEASGSDLDGDLYFVTWDGNLIP 880
Query: 845 C--KTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKAR 902
++ PM+Y A+ R+ VT+++I FFV M+N+ LG+I AH+VHAD A
Sbjct: 881 PSKRSWPPMEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQLGSICNAHVVHADSSDYGAL 940
Query: 903 SSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLYRAL 962
C+ LA+L + AVDF KTG MP LKP+++PDFM + Y S +LG+LYR +
Sbjct: 941 DENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSYKSKKILGRLYRRI 1000
Query: 963 VES---KLQASS-NVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFY 1018
++ + A N V S+ L YD +LE G F+ A + Y +++ L+ Y
Sbjct: 1001 KDAYDKDIDAPEFNCVSSDIL----YDTDLEVPGSSEFIADAWEQRCSYDGQLSGLLGQY 1056
Query: 1019 GAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILISVKDLQREAKEWFE---------A 1069
+TE+E++TG + + Y ++R+ ++K+R+ S L++E ++ FE +
Sbjct: 1057 KVKTEEEVVTGQIWSMPKY---NSRKQGELKERLKHSYSALKKEFRQIFEKLKSDVGELS 1113
Query: 1070 DCQQH-EYQAMASAWYHVTYHPKYYHESSSF------------------LSFPWIVGDIL 1110
D +++ Y+ ASAWY VTYHPK+ +S LSFPWI D L
Sbjct: 1114 DKEKNLLYEQKASAWYQVTYHPKWVKKSLDLQLKSSDNQSADSLGNMVMLSFPWIAVDYL 1173
Query: 1111 LHIKSVNSKV 1120
K+ + +V
Sbjct: 1174 ACTKTRHRRV 1183
>Medtr3g107390.1 | RNA-dependent RNA polymerase family protein | HC |
chr3:49541314-49536090 | 20130731
Length = 1203
Score = 562 bits (1449), Expect = e-160, Method: Compositional matrix adjust.
Identities = 406/1210 (33%), Positives = 609/1210 (50%), Gaps = 142/1210 (11%)
Query: 10 VRIFNIPQSATAKDLLAFLKSTFG------------PSSIYA---------LEIFSDYSN 48
V I A DL+++L+S G P Y +EI DY
Sbjct: 17 VSIGGFDSDVKASDLVSYLESKIGYVDRCRLKTSCTPPESYPEFTMTDTKQIEITDDYKK 76
Query: 49 WKSRGSGRVQFEDLATKSRALSLAESQKLIFKSHFLRLSENSDDIIPRPP--LPQHR--- 103
D AT+ AL+ A LI L++ P+ P L Q R
Sbjct: 77 VAPHAFVHFTLPDSATE--ALNAAGRCDLILNGKVLKVISG-----PQNPNFLNQRRRTE 129
Query: 104 ----LNNTILNAGFTVGPDDFVILDTW----DGVQGWIMPERR--KLEF----WVWFQG- 148
+++ I+ G V P DF + W GV + P + K+ F F+G
Sbjct: 130 APFKMSDVIVEIGTLVSPADFTV--AWRGCDKGVNFLVDPFDKICKICFNRDTAFSFKGI 187
Query: 149 ------EC-YKLEIPFEDILETVGYASGDDGKPPDALILKLKYGPRIYQRKSGPDIASKF 201
+C +K+ DI E Y D ++L+L P ++ R + DI
Sbjct: 188 GKQAVIKCDFKVGFLIRDIEEIQRY----DDTSHLVVLLRLASSPLVWYRTADDDIDESV 243
Query: 202 KADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEE-----SSSLDVFQSFPLYR 256
D DD W+RTTDF+P +IG + I + +L+ + + R
Sbjct: 244 TID---LLDDDDP--WIRTTDFTPSGAIGRCNYYRISIPPRHGAKLNKALEYLRRQRVPR 298
Query: 257 VSLKDLNLDQKYSCSATETVPLVKC----GPGSKLPYEDLFQLNCLVHTQKISLASVNDE 312
+ LK K VP+ + ++ +F +N +VH + S++++
Sbjct: 299 IPLK---RPPKIQNEPDFGVPMSDAFFYIDSQKDISFDIMFLINAIVHRGIFNQYSLSNK 355
Query: 313 LIALFGSLTDETKAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRHLPSAQKRLADNN 372
L + + + + +D + + L K + S Q ++
Sbjct: 356 FFELLKNQPKDVNVAALKHICTYKHPVFDAAKRLEAVQKWLLRNPKFYQISKQS----DD 411
Query: 373 IMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDWSKLPSNAVSTTV 432
+M R ++TPTK YC+ PE+E SN V++ F + + F+R+TF++E L + A++ V
Sbjct: 412 VMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDEGQQTLNNYALNYYV 471
Query: 433 H---KGIFSKPF--KTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWVFASNDH 487
K I S F KT IYKR+ TIL DG +++ FLAFS++QLR S W FA +
Sbjct: 472 APIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKD 531
Query: 488 VKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVE-IIPDIEVNSDGVDY 546
+ DIR WMG FN ++V+KCAARMGQ FSS+ + EV EV ++PD+E N +Y
Sbjct: 532 ITCDDIRNWMGRFNQ-KNVAKCAARMGQCFSSTYASVEVPANEVNSMLPDVERN----NY 586
Query: 547 CFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIAL--DRHSFRKLSLRGS 604
FSDGIG I+ A +VA+KLKLD++ PSA+QIRY G+KGV+A + KLSLR S
Sbjct: 587 VFSDGIGIITTDLAVEVAEKLKLDKA--PSAYQIRYAGFKGVVACWPAKGDGIKLSLRPS 644
Query: 605 MLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLGRMLTDR 664
M KF+S + L + W+ P FLNR+II+LLS L V DE MQ+ + L +ML DR
Sbjct: 645 MNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIFWKMQEGMISSLNQMLVDR 704
Query: 665 EAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCRICVPK 724
+ A DVL + S + + ML + P +EP+L ML + QL L+ + RI V
Sbjct: 705 DVAYDVL-TKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSS 763
Query: 725 GRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVIVTKNPC 784
GR L+G LDE G+L GQ FV+V+ ++EN + + ++ G V++ KNPC
Sbjct: 764 GRWLMGVLDELGVLEQGQCFVQVST-PSLENCFSKHGSRFSETKTVHVVKGIVVIAKNPC 822
Query: 785 LHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIP 844
LHPGDVRVL+A+ +L + DC+VFPQKG RPH +E SG DLDGDL+F++WD +LIP
Sbjct: 823 LHPGDVRVLEAVDVPDLHH--LYDCVVFPQKGERPHTDEASGSDLDGDLYFVTWDGNLIP 880
Query: 845 C--KTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKAR 902
++ PM+Y A+ R+ VT+++I FFV M+N+ LG+I AH+VHAD A
Sbjct: 881 PSKRSWPPMEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQLGSICNAHVVHADSSDYGAL 940
Query: 903 SSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLYRAL 962
C+ LA+L + AVDF KTG MP LKP+++PDFM + Y S +LG+LYR +
Sbjct: 941 DENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSYKSKKILGRLYRRI 1000
Query: 963 VES---KLQASS-NVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFY 1018
++ + A N V S+ L YD +LE G F+ A + Y +++ L+ Y
Sbjct: 1001 KDAYDKDIDAPEFNCVSSDIL----YDTDLEVPGSSEFIADAWEQRCSYDGQLSGLLGQY 1056
Query: 1019 GAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILISVKDLQREAKEWFE---------A 1069
+TE+E++TG + + Y ++R+ ++K+R+ S L++E ++ FE +
Sbjct: 1057 KVKTEEEVVTGQIWSMPKY---NSRKQGELKERLKHSYSALKKEFRQIFEKLKSDVGELS 1113
Query: 1070 DCQQH-EYQAMASAWYHVTYHPKYYHESSSF------------------LSFPWIVGDIL 1110
D +++ Y+ ASAWY VTYHPK+ +S LSFPWI D L
Sbjct: 1114 DKEKNLLYEQKASAWYQVTYHPKWVKKSLDLQLKSSDNQSADSLGNMVMLSFPWIAVDYL 1173
Query: 1111 LHIKSVNSKV 1120
K+ + +V
Sbjct: 1174 ACTKTRHRRV 1183
>Medtr1g032630.2 | RNA-directed RNA polymerase | HC |
chr1:11634851-11638361 | 20130731
Length = 789
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 302/819 (36%), Positives = 456/819 (55%), Gaps = 44/819 (5%)
Query: 9 TVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQFEDLATKSRA 68
T+ ++ P + F++ G S+ A++I K R +QF +
Sbjct: 6 TIELYGFPSFVNVSQVKIFVEHYTGEGSVVAMKIRVGNGRVK-RAFAIIQFTTAKHATFM 64
Query: 69 LSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFVILDTWDG 128
++L KL F +L++ E DI P+P L++ L G + + F L D
Sbjct: 65 MALPSRTKLRFGDSYLKVRELERDIDPKPRAFLDSLDDVKLYFGCQISKERFSKLWKVDA 124
Query: 129 VQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILKLKYGPRI 188
+ + RK F + + + +KLE+ +E+I + + GK L+++L PR+
Sbjct: 125 SVDFGI-GMRKWRFSMHHENKKFKLELSYENIWKIELHQP--QGKTAKYLLIQLIGAPRV 181
Query: 189 YQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEESSSLDV 248
++ + P S +K ++ +D + W+R DF+P IG S++ E+ SS+ D
Sbjct: 182 FE-CNVPTSTSVYKDPLKNYYRDSPDDQWIRAIDFTPCNCIGQSSAICLEL---SSNRD- 236
Query: 249 FQSFPLYRVSLKD------LNLDQKYSCSATETVPLVKCGPGSKLPYEDLFQLNCLVHTQ 302
F +F V ++ L +SC+ + VP+V G ++P++ LF++N LV
Sbjct: 237 FPNFKENCVHYEEIEGQYTLESGSSFSCNP-DVVPMVAPPQGIQIPFDILFKVNSLVQHG 295
Query: 303 KISLASVNDELIALFGSLTDETKAM--VFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRH 360
+S + ++++ L L + + +K++ CY+P ++ Q R +
Sbjct: 296 CLSGSELDNDFYRLVDPLGINVELIKHALEKMYYSKDFCYEPARWLKGQYR--RYLRANN 353
Query: 361 LPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDW 420
P + DN ++ R ITP K+Y GPE+ SN V++HF Q+ +F+R++FV+E+
Sbjct: 354 PPRSPTISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEEL 413
Query: 421 SKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVW 480
+ S +S+ + S+ +TEIY RIL+ILR+GI IG +FEFLAFS+SQLR NS+W
Sbjct: 414 DNMYSADLSSRI-----SENGRTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLW 468
Query: 481 VFASNDHVKAAD-IREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIEV 539
+FA AD IREWMG F+ I++V+K AAR+GQ F SS +T V E+EIIPD +V
Sbjct: 469 MFARTTTGLTADSIREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVRRNEIEIIPDAKV 528
Query: 540 NSDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRKL 599
+Y FSDGIGKISL AR+VA+K D +PSAFQIRYGGYKGV+A+D S KL
Sbjct: 529 KHGATEYVFSDGIGKISLELARRVAKKCGHDS--VPSAFQIRYGGYKGVVAVDPTSSVKL 586
Query: 600 SLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLGR 659
SLR SM K++SDN L V S+ PC+LNR++I+LL TL VKD Q+E + L
Sbjct: 587 SLRKSMHKYDSDNIKLDVLACSKFQPCYLNRQLITLLCTLDVKDSVFEKKQKEAVTQLNT 646
Query: 660 MLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCR 719
+LTD A +VL+ + + +IL +ML Y+P+ EP+LSMML+ +L +L+ + R
Sbjct: 647 ILTDSTKAHEVLDLMCSGEVTNILKEMLICGYKPDVEPFLSMMLQTFRASKLLELRQKTR 706
Query: 720 ICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVIV 779
I +PKGR ++G LDET L YG+VFV+ + N+ +S R++ G VIV
Sbjct: 707 IFIPKGRAMMGVLDETRTLEYGEVFVQYSSNRFSSHS--------------RVVKGMVIV 752
Query: 780 TKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHR 818
KNPCLHPGDVRVL A+ L M DC+VFPQKGHR
Sbjct: 753 AKNPCLHPGDVRVLKAVDVPALRH--MVDCVVFPQKGHR 789
>Medtr1g032710.1 | RNA-dependent RNA polymerase family protein | HC |
chr1:11677169-11674944 | 20130731
Length = 554
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/559 (43%), Positives = 355/559 (63%), Gaps = 34/559 (6%)
Query: 574 IPSAFQIRYGGYKGVIALDRHSFRKLSLRGSMLKFESDNRMLCVTKWSESMPCFLNREII 633
+PSAFQIRY G+KGV+A+D S KLSLR SM K++S N L V S+ PC+LNR++I
Sbjct: 1 MPSAFQIRYRGFKGVVAVDPTSSVKLSLRMSMRKYDSVNADLDVLACSKFQPCYLNRQLI 60
Query: 634 SLLSTLGVKDEALLAMQQEQLHLLGRMLTDREAALDVLESLSGVDSKSILVKMLHQFYEP 693
+LLSTL VKD Q++ ++ L +LTD A +VL+ + + +IL ML Y+P
Sbjct: 61 TLLSTLDVKDSVFEKKQRKVVNQLNTILTDSMKAHEVLDLMFSGEVANILKDMLICGYKP 120
Query: 694 NSEPYLSMMLKAHYTEQLSDLKSRCRICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTM 753
N EP+LSMML+ +L +L+ R RI +PKGR ++G LDET L YG+VFV+ + +
Sbjct: 121 NIEPFLSMMLQTFRASKLLELRQRTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSHKRHS 180
Query: 754 ENSGDDSLRKVDGDDSTRIIVGKVIVTKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFP 813
S ++ G+V+V KNPCLHPGDVRVL A+ L M DC+VFP
Sbjct: 181 CLS--------------HVVKGEVVVAKNPCLHPGDVRVLKAVDVPALRH--MVDCVVFP 224
Query: 814 QKGHRPHPNECSGGDLDGDLFFISWDKDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQF 873
QKGHRPHPNECSG DLDGD++F+ WD +LIP +T EPM+Y + + +++H V +EE++++
Sbjct: 225 QKGHRPHPNECSGSDLDGDIYFVCWDPELIPPRTIEPMEYNSAQSTLLNHDVEIEEVEEY 284
Query: 874 FVDYMINDTLGAISTAHLVHADREPDKARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLK 933
F +YM+ND+LG IS AH V AD+EP KA S C+ELA+L S+AVDF KTG PA +P L
Sbjct: 285 FTNYMLNDSLGIISNAHTVFADKEPAKAMSEPCIELAKLFSIAVDFPKTGIPAVIPPHLF 344
Query: 934 PRVFPDFMERFEKPMYISNGVLGKLYRALVESKLQASSNVVWSEKLAEDAYDLNLEANGF 993
+ +PDFME+ +K Y S V+GKL+R + + S ++ ++A+++YD ++E GF
Sbjct: 345 AKEYPDFMEKPDKTTYKSKNVIGKLFREIQGISTEGGSLTSFTLEVAKESYDSDMEFEGF 404
Query: 994 EAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRA-SYLQRDNRRYTDMKDRI 1052
+++ A HK Y K+ LM +YG +TE E+L+GN+ + S+ +R + D I
Sbjct: 405 MDYVDDAFYHKTNYDYKLGNLMDYYGIKTESEILSGNIMKMSKSFTKRRD------ADAI 458
Query: 1053 LISVKDLQREAKEWF-----EADCQQHEYQAMASAWYHVTYHPK---YYHES---SSFLS 1101
++V+ L++EA+ WF + D + A ASAWY+V+YH Y+E FLS
Sbjct: 459 TMAVRSLRKEARSWFNDGAADVDAGSDDAYAKASAWYYVSYHHSYYGLYNEGMKRDHFLS 518
Query: 1102 FPWIVGDILLHIKSVNSKV 1120
FPW V +L+ IK +++
Sbjct: 519 FPWCVYHLLVQIKKEKARM 537
>Medtr6g088660.1 | RNA-dependent RNA polymerase family protein | HC
| chr6:33756998-33772645 | 20130731
Length = 974
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 184/430 (42%), Gaps = 66/430 (15%)
Query: 586 KGVIALDRH-SFRKLSLRGSMLKFESD--------NRMLCVTKWSESMPCFLNREIISLL 636
KG + ++R + +R SM+K E+D N + VT + +L++ +I+LL
Sbjct: 442 KGTLLVNRKLPQNTIQVRPSMIKVETDSLTNIPSLNSLEVVTTSQKPNRAYLSKYLIALL 501
Query: 637 STLGVKDEALLAMQQEQLHLLGRMLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSE 696
S GV +E + + + L + T++ AAL + + +D + +L P E
Sbjct: 502 SFGGVPNEFFMDVLKRNLEDAEHIYTNKRAALRASVNHAEMDEYNAAGMLLCGI--PLDE 559
Query: 697 PYLSMMLKAHYTEQLSDLKSRCRICVPKGRL-LVGCLDETGILNYGQVFVRVTVNKTMEN 755
P+ ++ H + K+R R G+L L C +V TV+ T +
Sbjct: 560 PF----MRYHLSILAKTEKNRLR----AGKLYLEDCF-----------YVMGTVDPTESH 600
Query: 756 SGDDSLRKVDGDDSTRIIVGKVIVTKNPCLHPGDVRVLDAIYHEELEE--NGMRDCLVFP 813
+ + ++ I G V+V +NP LH GD+ + A Y EELE + + FP
Sbjct: 601 CLKPNQVCIIHENGQ--ITGDVLVYRNPGLHFGDIHKMQATYVEELESYVGHGKYAIFFP 658
Query: 814 QKGHRPHPNECSGGDLDGDLFFISWDKDLI-------------PCKTEEPMDYTARRPRI 860
G R +E +GGD DGD+++IS + L+ PC + + ++P
Sbjct: 659 CVGPRSIADEIAGGDFDGDMYWISKNPQLLQYFKSSKPWIESPPCNSAR--SFCVKKPSE 716
Query: 861 MDHMVTLEEIQQFFVD--YMINDTLGAISTAHLVHADR----------EPDKARSSKCLE 908
+ E + + +++ + + +G + + DR E ++ + + +
Sbjct: 717 LSAEELEEALFRLYLETRFQPSSAIGMAADGWMALMDRLLILPNDRSIEKEQVKEN-IYK 775
Query: 909 LAQLHSMAVDFAKT-GAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLYRALVESKL 967
L L+ A+D K G +P L +FP +MER + S +LG +Y + +
Sbjct: 776 LIDLYYEALDAPKKGGGKMKIPSNLNVEMFPHYMER--NISFTSTSILGSIYDEVCRWQT 833
Query: 968 QASSNVVWSE 977
S +V S+
Sbjct: 834 TDMSGIVISK 843