Miyakogusa Predicted Gene

Lj4g3v1535060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1535060.1 tr|Q1XG54|Q1XG54_CRYJA Similarity to ribonuclease
III OS=Cryptomeria japonica PE=2 SV=1,38.21,1e-17,RNase III
domain-like,Ribonuclease III domain; Ribonuclease III
family,Ribonuclease III domain; no d,CUFF.49408.1
         (179 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g106640.1 | ribonuclease III | HC | chr4:44006858-44007973...   222   2e-58
Medtr4g079220.1 | ribonuclease III, putative | HC | chr4:3058650...   125   2e-29

>Medtr4g106640.1 | ribonuclease III | HC | chr4:44006858-44007973 |
           20130731
          Length = 178

 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 125/156 (80%), Gaps = 2/156 (1%)

Query: 24  QGHSLLSPFPSALETLQKQLGYNFKTISLLRRAMTHASFSEENNKALSILGAAVIETSAS 83
           QGHS  SPF SALETLQKQLGY FK+ISLLRRAMTHASFSEENNKA SILGA  IETS S
Sbjct: 25  QGHSF-SPFSSALETLQKQLGYTFKSISLLRRAMTHASFSEENNKAFSILGATSIETSVS 83

Query: 84  FHLISKDIDISAKELNRRLSQVSNVESSCAVDGVHLGLHKVVRVSPKTNSSAPAVVCXXX 143
           F+L+SKD+DISAKELNRRLS +SNV+SSCAVD   LGLHKVVRVSPKTNSS+ AVVC   
Sbjct: 84  FNLLSKDVDISAKELNRRLSLISNVDSSCAVDAKRLGLHKVVRVSPKTNSSSTAVVCGAF 143

Query: 144 XXXXXXXXXDTGKSDDAGNVFWTIHGVGDVGVAAAL 179
                    DTG S+ AGNVF T+HG  D+GV AA+
Sbjct: 144 RSIFGAISLDTGSSEAAGNVFLTVHG-RDLGVYAAM 178


>Medtr4g079220.1 | ribonuclease III, putative | HC |
          chr4:30586507-30586015 | 20130731
          Length = 104

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/75 (81%), Positives = 68/75 (90%), Gaps = 1/75 (1%)

Query: 24 QGHSLLSPFPSALETLQKQLGYNFKTISLLRRAMTHASFSEENNKALSILGAAVIETSAS 83
          QGHS  SPF SALETLQKQLGY FK+ISLLRRAMTHASFSEENNKA SILGA +IETS S
Sbjct: 25 QGHSF-SPFSSALETLQKQLGYTFKSISLLRRAMTHASFSEENNKAFSILGATIIETSVS 83

Query: 84 FHLISKDIDISAKEL 98
          F+L+SKD+DISAK++
Sbjct: 84 FNLLSKDVDISAKDV 98