Miyakogusa Predicted Gene

Lj4g3v1534990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1534990.1 Non Characterized Hit- tr|I1JLP3|I1JLP3_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,57.2,0,CHROMO_2,Chromo domain/shadow; Ribonuclease
H-like,Ribonuclease H-like domain; Chromo domain-like,Ch,CUFF.49387.1
         (270 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g029555.1 | hypothetical protein | LC | chr7:10634063-1063...   105   6e-23
Medtr1478s0010.1 | hypothetical protein | HC | scaffold1478:1661...    95   9e-20
Medtr1g050845.1 | B3 DNA-binding domain protein | LC | chr1:1975...    93   2e-19
Medtr6g045307.1 | IPP transferase | LC | chr6:16235075-16228160 ...    87   2e-17
Medtr0011s0100.1 | Pol polyprotein/retrotransposon, putative | L...    84   2e-16
Medtr0037s0030.1 | chromo domain protein | LC | scaffold0037:235...    69   5e-12
Medtr0113s0060.1 | chromo domain protein | LC | scaffold0113:194...    67   2e-11
Medtr5g049330.1 | chromo domain protein, putative | LC | chr5:21...    64   2e-10
Medtr4g044373.1 | hypothetical protein | LC | chr4:15044558-1504...    62   5e-10
Medtr3g092800.1 | hypothetical protein | LC | chr3:42427916-4242...    62   6e-10
Medtr6g463630.1 | tyrosine kinase family protein | LC | chr6:220...    51   1e-06
Medtr8g061250.1 | hypothetical protein | LC | chr8:21066457-2106...    49   5e-06

>Medtr7g029555.1 | hypothetical protein | LC |
           chr7:10634063-10633011 | 20130731
          Length = 251

 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 91/160 (56%)

Query: 32  PRKWLEGLHWAEYWYNTNFQVSAGMTPFKAPYGRDPPILVKGCVELTKLNDLSQLLQQRD 91
           P +W + L WAE+ YNT    S G +P +  +G+ PP L +     +    +   L  RD
Sbjct: 14  PNQWGKYLPWAEWHYNTTVHDSTGFSPLQVVFGKPPPTLQQYVEGSSTTEAVQSELMTRD 73

Query: 92  VLLSQLQQNLLKAQASMRTQADKHRRDVEYVVDDWVYLKLHPYKMKSMATRTYPKLYARF 151
            +L +L+Q LLKAQ +M+  ADK R    + V D V LKL P++  S+A     KL  R+
Sbjct: 74  AILQKLKQKLLKAQQTMKDFADKRRIPHPFKVGDLVLLKLRPHRQVSVAGHRVNKLAKRY 133

Query: 152 YGPFQIVAKVGQVAYKLDLPPTARIHPVFHVSVLKKAVAQ 191
           Y PF I+  +G VA++L LP T+RIHPVFH S LK    +
Sbjct: 134 YAPFPILRSIGDVAFQLALPATSRIHPVFHASQLKPCFGE 173


>Medtr1478s0010.1 | hypothetical protein | HC |
           scaffold1478:1661-863 | 20130731
          Length = 219

 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 61/204 (29%)

Query: 64  GRDPPILVKGCVELTKLNDLSQLLQQRDVLLSQLQQNLLKAQASMRTQADKHRRDVEYVV 123
           GR PP+L+      T++  ++Q L+ RD  L QL+Q                        
Sbjct: 35  GRKPPVLMHFVEGETRVETVAQELRDRDEALRQLKQ------------------------ 70

Query: 124 DDWVYLKLHPYKMKSMATRTYPKLYARFYGPFQIVAKVGQVAYKLDLPPTARIHPVFHVS 183
                        +SM  R + KL  RF+GP+Q++  +GQVAYKL L   + IHP FHVS
Sbjct: 71  -------------QSMVQRIHQKLAPRFFGPYQVIKNIGQVAYKLQLHAESIIHPTFHVS 117

Query: 184 VLKKAVAQGHTPQPLPDTLTEDFCLEVEPADLLDWRQNVQGQLEVLLSWKNLPAHENSWE 243
            LKKA+        LP +                        LE+ L   N+  ++ +WE
Sbjct: 118 QLKKALGNYTLLTELPSS------------------------LEISLMGDNIKENDATWE 153

Query: 244 LATAIMSHFPDFPLEDKVVLLGGG 267
               + S FPD  LEDK V  GGG
Sbjct: 154 EELLLKSQFPDLSLEDKTVYDGGG 177


>Medtr1g050845.1 | B3 DNA-binding domain protein | LC |
           chr1:19756003-19762298 | 20130731
          Length = 830

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 121/258 (46%), Gaps = 23/258 (8%)

Query: 1   MSTSYHPQTDGQTEVLNRCLETYLRCYVGPTPRKWLEGLHWAEYWYNTNFQVSAGMTPFK 60
           +S++YHPQTDGQ+E   + LE  LR  V      W   L   E+ YN ++  S GMTPF+
Sbjct: 556 LSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFMYNNSYHSSIGMTPFE 615

Query: 61  APYGR--DPPILVKGCVELTKLNDLSQLLQQRDVLLSQLQQNLLKAQASMRTQADKHRRD 118
           A YGR    P+      E   L     ++QQ    +  +Q+ +   Q+  ++  DK R+D
Sbjct: 616 ALYGRRCRTPLCWFESGESVVLG--PDIVQQTTEKVKLIQEKMKALQSRQKSYHDKRRKD 673

Query: 119 VEYVVDDWVYLKLHPYKMKSMATRTYPKLYARFYGPFQIVAKVGQVAYKLDLPPTARIHP 178
           +E+   D V+L++        A ++  KL  RF GP+QI  ++G VAY+    P+  I P
Sbjct: 674 LEFQEGDHVFLRVTLVIGVGRALKS-KKLTPRFIGPYQISERIGTVAYRYVSDPSHVI-P 731

Query: 179 VFHVSVLKKAVAQGHTPQPLPDTLT-EDFCLEVEPADLLDWRQNVQGQLEVLLSWKNLPA 237
              V V               D LT E   + +E  ++   R      ++V+  W+    
Sbjct: 732 RDDVQV--------------RDNLTVETLPVRIEGREVKTLRGKEIPLVKVV--WEGADG 775

Query: 238 HENSWELATAIMSHFPDF 255
              +WEL + ++  +P+ 
Sbjct: 776 ESLTWELESKMLESYPEL 793


>Medtr6g045307.1 | IPP transferase | LC | chr6:16235075-16228160 |
           20130731
          Length = 1039

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 15/214 (7%)

Query: 53  SAGMTPFKAPYGRD--PPI--LVKGCVELTKLNDLSQLLQQRDVLLSQLQQNLLKAQASM 108
           S GM PF+A YGR    P+     G   L  L    +++Q+    +  +Q+ +  +Q+  
Sbjct: 483 SIGMAPFEALYGRRCRTPLCWFESGESALLGL----EVVQETTEKVKIIQEKMKASQSRQ 538

Query: 109 RTQADKHRRDVEYVVDDWVYLKLHPYKMKSMATRTYPKLYARFYGPFQIVAKVGQVAYKL 168
           ++  DK R+D+E+ V D V+ +++P      A +   KL  RF GPF ++ KVG VAY++
Sbjct: 539 KSYHDKRRKDIEFQVGDHVFFRVNPVTGVGRALKCR-KLTPRFVGPFDVIEKVGVVAYRI 597

Query: 169 DLPPT-ARIHPVFHVSVLKKAVAQG-HTPQPLPDTLTEDFCLEVEPADLLDWR-QNVQGQ 225
            LPP+ + +H VFHVS L+K V    H  Q     + ++  +E  P  + D   + ++G+
Sbjct: 598 ALPPSLSNLHNVFHVSQLRKYVHDASHVIQVDELEVRDNLTVETLPVRIEDRELKRLRGK 657

Query: 226 LEVLLS--WKNLPAHENSWELATAIMSHFPD-FP 256
             VL+   W        +WE  + +   +P+ FP
Sbjct: 658 EIVLVKVIWVGPTGESATWEPESRMRVSYPELFP 691


>Medtr0011s0100.1 | Pol polyprotein/retrotransposon, putative | LC |
           scaffold0011:121977-125423 | 20130731
          Length = 235

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 97  LQQNLLKAQASMRTQADKHRRDVEYVVDDWVYLKLHPYKMKSMATRTYPKLYARFYGPFQ 156
           +Q+ +  +Q+  ++  DK R+D+E+ V D V+L+++P      A +   KL   F GPF 
Sbjct: 2   IQEKMKASQSRQKSYHDKRRKDIEFQVGDHVFLRVNPVTGVGRALKCR-KLTPHFVGPFN 60

Query: 157 IVAKVGQVAYKLDLPPT-ARIHPVFHVSVLKKAVAQ-GHTPQPLPDTLTEDFCLEVEPAD 214
           ++ KVG VAY++ LPP+ + +H VFHVS L+K V    H  Q     + ++  +E  P  
Sbjct: 61  VIEKVGDVAYRIALPPSLSNLHNVFHVSQLRKYVHDLSHGIQVDDVEVRDNLTVETWPVR 120

Query: 215 L--LDWRQNVQGQLEVLLS--WKNLPAHENSWELATAIMSHFPD-FP 256
           +   DW++ ++G+  VL+   W   P    +WE  + +   +P+ FP
Sbjct: 121 IECRDWKR-LRGKEIVLVKVIWVGQPGESATWEAESRMKVSYPELFP 166


>Medtr0037s0030.1 | chromo domain protein | LC |
           scaffold0037:23550-24583 | 20130731
          Length = 223

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 7/149 (4%)

Query: 116 RRDVEYVVDDWVYLKLHPYKMKSMATRTYPKLYARFYGPFQIVAKVGQVAYKLDLPPT-A 174
           R+D+E+ V D V+L+++P      A +   KL   F GPF ++ KVG VAY++ LPP+ +
Sbjct: 2   RKDIEFHVGDHVFLRVNPVTGVGRALKCR-KLTPHFIGPFDVIEKVGIVAYRIALPPSLS 60

Query: 175 RIHPVFHVSVLKKAVAQ-GHTPQPLPDTLTEDFCLEVEPADLLDWR-QNVQGQLEVLLS- 231
            +H VFHVS L+K V    H  Q     + ++  +E  P  + D   + ++G+  VL+  
Sbjct: 61  NLHNVFHVSQLRKFVHDVSHVIQVDELEVRDNMTVETWPVRIDDREMKRLRGKKIVLIKV 120

Query: 232 -WKNLPAHENSWELATAIMSHFPD-FPLE 258
            W        +WE  + +   +P+ FP E
Sbjct: 121 IWVGPTGESATWEPESRMKVSYPELFPSE 149


>Medtr0113s0060.1 | chromo domain protein | LC |
           scaffold0113:19492-15456 | 20130731
          Length = 452

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 7/151 (4%)

Query: 100 NLLKA-QASMRTQADKHRRDVEYVVDDWVYLKLHPYKMKSMATRTYPKLYARFYGPFQIV 158
            L+KA Q+  ++  DK R+ +E+   D V+L++ P      A ++  KL  +F GP+QI 
Sbjct: 212 ELMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPLTGVGRALKSR-KLTPKFIGPYQIS 270

Query: 159 AKVGQVAYKLDLPP-TARIHPVFHVSVLKKAVAQGHTPQPLPDTLTED-FCLEVEPADLL 216
            +VG VAY + LPP  + +H VFHVS L+K VA      P  D    D   +E  P  + 
Sbjct: 271 ERVGIVAYSVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETMPLRID 330

Query: 217 DWR-QNVQGQLE--VLLSWKNLPAHENSWEL 244
           D + ++++G+    V + W        +WEL
Sbjct: 331 DRKVKSLRGKEIPLVRVVWGGATGESFTWEL 361


>Medtr5g049330.1 | chromo domain protein, putative | LC |
           chr5:21623005-21620531 | 20130731
          Length = 252

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 12/145 (8%)

Query: 104 AQASMRTQADKHRRDVEYVVDDWVYLKLHPYKMKSMATRTYPKLYARFYGPFQIVAKVGQ 163
           AQ+  +  +D+ RR +E+   D ++L++        A ++  KL  +F  P+QI+ ++G 
Sbjct: 4   AQSRQKNYSDRRRRPIEFEESDHIFLRVASTTEVGRAIKSR-KLTPKFIVPYQILRRIGP 62

Query: 164 VAYKLDLPP-TARIHPVFHVSVLKKAVAQ-GHTPQPLPDTLTEDFCLEVEPADLLDWRQN 221
            AY++ LPP  + IH VFHVS L+K ++   H  +P    L E+   E  P  + D R  
Sbjct: 63  DAYQIALPPFLSNIHDVFHVSQLRKYISDPSHMIEPDIVPLKENLSYESLPVKIDDKR-- 120

Query: 222 VQGQLEVLLSWKNLPAHENSWELAT 246
                  +   + +  +E+S+ L T
Sbjct: 121 -------IKQLRGVDGNEDSYGLVT 138


>Medtr4g044373.1 | hypothetical protein | LC |
           chr4:15044558-15046075 | 20130731
          Length = 159

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 7/83 (8%)

Query: 126 WVYLKLHPYKMKSMATRTYPKLYARFYGPFQIVAKVGQVAYKLDLPPTARIHPVFHVSVL 185
           +VY +L PY   ++  R   KL   ++GPF ++  +G +AY+LDLP   RIHPV HVS L
Sbjct: 48  FVY-RLQPYLQNTVKRRISKKLSKSYFGPFTVLCCIGDLAYELDLPQNLRIHPVIHVSQL 106

Query: 186 KKAVAQGHTPQ----PLPDTLTE 204
           K    QG+ P+    PLP  L++
Sbjct: 107 KD--YQGNDPEAHFAPLPPDLSK 127


>Medtr3g092800.1 | hypothetical protein | LC |
           chr3:42427916-42428276 | 20130731
          Length = 102

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 105 QASMRTQADKHRRDVEYVVDDWVYLKLHPYKMKSMATRTYPKLYARFYGPFQIVAKVG 162
           Q  M+ QA+KHR+DV Y V +WV LKL  YK KS+A +   KL  RFYGP+QI  KVG
Sbjct: 14  QNEMKVQANKHRKDVTYAVRNWVNLKLW-YKPKSLAKKINEKLSPRFYGPYQIT-KVG 69


>Medtr6g463630.1 | tyrosine kinase family protein | LC |
           chr6:22088447-22085198 | 20130731
          Length = 572

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 87  LQQRDVLLSQLQQNLLKAQASMRTQADKHRRDVEYVVDDWVYLKLHPYKMKSMATRTYPK 146
           L  R+ +L  L+  L KAQ +M+  AD+HR    + V DWV+ K+ PY   S+      K
Sbjct: 25  LNSREHILQVLRNKLPKAQDNMKQYADRHRIPHTFQVGDWVFFKIRPYWKTSVVGHRMNK 84

Query: 147 LYARFYGPFQIVAKVGQVAYKLDLP 171
           L   +YGP    +       +LDLP
Sbjct: 85  LSKHYYGPCHNASHT-----QLDLP 104


>Medtr8g061250.1 | hypothetical protein | LC |
           chr8:21066457-21065485 | 20130731
          Length = 169

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 15/76 (19%)

Query: 93  LLSQLQQNLLKAQASMRTQADKHRRDVEYVVDDWVYLKLHPYKMKSMATRTYPKLYARFY 152
           ++S  ++    AQ  M+ Q DKHRRDV+  V DWV                  KL  RFY
Sbjct: 83  IVSDREKVFFMAQQRMKKQTDKHRRDVQPAVGDWV---------------RNEKLSPRFY 127

Query: 153 GPFQIVAKVGQVAYKL 168
           GP+ ++ K+  VAY +
Sbjct: 128 GPYLVLEKIRPVAYSI 143