Miyakogusa Predicted Gene

Lj4g3v1534940.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1534940.2 Non Characterized Hit- tr|J3LYP7|J3LYP7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G2,39.1,0.00000000000001,seg,NULL,CUFF.49349.2
         (143 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g106630.1 | transmembrane protein, putative | HC | chr4:44...   181   2e-46

>Medtr4g106630.1 | transmembrane protein, putative | HC |
           chr4:44004430-44001993 | 20130731
          Length = 261

 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/134 (68%), Positives = 104/134 (77%), Gaps = 3/134 (2%)

Query: 1   MPGPGPHLMYAMGSGLALTTSTNGRFSPHHTLFYTVNSFFGPDIGSFSEWLGSLLGGPAD 60
           MPGPGPH+MYAMGSGL LTT +NGRFSPHHTL YT+NSFFGPDIGSFS+WL SL GG   
Sbjct: 1   MPGPGPHMMYAMGSGLCLTTVSNGRFSPHHTLIYTINSFFGPDIGSFSQWLVSLFGG--H 58

Query: 61  TVGSAVADXXXXXXXXXXXXGFPLCVLYSWISAFLIQRHLLD-SVSRVPLTRMQCFYLIS 119
           TV S  AD            G+PLC+LYS IS+FL+ +H LD S S+VPLT+MQC +LIS
Sbjct: 59  TVASTFADYIHHPFYYIIILGYPLCLLYSRISSFLLHKHFLDSSFSKVPLTKMQCLFLIS 118

Query: 120 AGSFTHFFLDHLFE 133
           AGS THFFLDHLFE
Sbjct: 119 AGSLTHFFLDHLFE 132