Miyakogusa Predicted Gene

Lj4g3v1512520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1512520.1 tr|Q8LQ55|Q8LQ55_ORYSJ Integral membrane
protein-like OS=Oryza sativa subsp. japonica
GN=P0039G05.12,38.6,2e-19,seg,NULL; DUF588,Uncharacterised protein
family UPF0497, trans-membrane plant,CUFF.49327.1
         (185 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g106940.1 | CASP ARALYDRAFT-like protein | HC | chr4:43951...   214   5e-56
Medtr3g078010.1 | CASP ARALYDRAFT-like protein | HC | chr3:35146...   191   5e-49
Medtr7g034390.2 | transmembrane protein, putative | HC | chr7:12...   117   4e-27
Medtr7g034390.1 | transmembrane protein, putative | HC | chr7:12...   117   8e-27
Medtr7g071110.1 | CASP-like protein | HC | chr7:26328733-2633072...    72   4e-13
Medtr4g013270.1 | CASP ARALYDRAFT-like protein | HC | chr4:36763...    64   9e-11
Medtr6g007160.1 | transmembrane protein, putative | HC | chr6:14...    62   2e-10

>Medtr4g106940.1 | CASP ARALYDRAFT-like protein | HC |
           chr4:43951134-43949095 | 20130731
          Length = 288

 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/157 (64%), Positives = 109/157 (69%)

Query: 29  SKREVMARKVALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFA 88
           SK +VM  KVALGFR+SEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLS+ VI F 
Sbjct: 132 SKSDVMTGKVALGFRISEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSMTVIGFV 191

Query: 89  YAAFQACDLGYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIXXXXXXXXRVDDWQSNWGK 148
           YA FQAC+LGYQL  G+ ++N          MDQVLAYLLI        RVDDWQSNWGK
Sbjct: 192 YAGFQACELGYQLITGKHIVNHHLRFHFDFLMDQVLAYLLISSASSAATRVDDWQSNWGK 251

Query: 149 DEFTEMASXXXXXXXXXXXXXXXXXXISGYNLCTIYP 185
           DEFTEMAS                  ISGYNLC  YP
Sbjct: 252 DEFTEMASASIALAFLAFIAFAISSLISGYNLCNRYP 288


>Medtr3g078010.1 | CASP ARALYDRAFT-like protein | HC |
           chr3:35146346-35143714 | 20130731
          Length = 296

 Score =  191 bits (484), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 93/151 (61%), Positives = 103/151 (68%)

Query: 32  EVMARKVALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFAYAA 91
           E + RK ALGFRL EVV+CLISFSVMAA+KTQGWSGDS+DRYKEYRYCLSVNVI FAYAA
Sbjct: 141 EEVTRKAALGFRLCEVVVCLISFSVMAANKTQGWSGDSYDRYKEYRYCLSVNVIGFAYAA 200

Query: 92  FQACDLGYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIXXXXXXXXRVDDWQSNWGKDEF 151
            QACDL +QL   + +I+          MDQV+AYLLI        RVDDWQSNWGKDEF
Sbjct: 201 LQACDLAFQLVTEKHMISHHLRYHFQFFMDQVVAYLLISASSSAATRVDDWQSNWGKDEF 260

Query: 152 TEMASXXXXXXXXXXXXXXXXXXISGYNLCT 182
           TEMA+                  ISGY LCT
Sbjct: 261 TEMATVSVGMSFLSFGAFAMSSLISGYILCT 291


>Medtr7g034390.2 | transmembrane protein, putative | HC |
           chr7:12870052-12873486 | 20130731
          Length = 296

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 83/153 (54%)

Query: 29  SKREVMARKVALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFA 88
           S++ V   KV LG R++  V CL+S+SV+AAD+ +GW+ DSF  YKE+RY LSVNVI F 
Sbjct: 141 SEKVVSLNKVLLGLRVAGFVFCLVSWSVLAADRKKGWAIDSFYLYKEFRYSLSVNVIGFV 200

Query: 89  YAAFQACDLGYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIXXXXXXXXRVDDWQSNWGK 148
           Y+A Q CDL   L   + ++           +DQ+L YLL+        R  DW+SNWG 
Sbjct: 201 YSAVQICDLVKYLITKKHIVEHKLRGYFTFALDQILTYLLMSASSSAATRAYDWESNWGN 260

Query: 149 DEFTEMASXXXXXXXXXXXXXXXXXXISGYNLC 181
           D+F  MA+                  +SG  +C
Sbjct: 261 DKFPFMANASVVLSFIAFAAFALTSLVSGSIVC 293


>Medtr7g034390.1 | transmembrane protein, putative | HC |
           chr7:12870132-12874317 | 20130731
          Length = 303

 Score =  117 bits (292), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 78/128 (60%)

Query: 29  SKREVMARKVALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFA 88
           S++ V   KV LG R++  V CL+S+SV+AAD+ +GW+ DSF  YKE+RY LSVNVI F 
Sbjct: 141 SEKVVSLNKVLLGLRVAGFVFCLVSWSVLAADRKKGWAIDSFYLYKEFRYSLSVNVIGFV 200

Query: 89  YAAFQACDLGYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIXXXXXXXXRVDDWQSNWGK 148
           Y+A Q CDL   L   + ++           +DQ+L YLL+        R  DW+SNWG 
Sbjct: 201 YSAVQICDLVKYLITKKHIVEHKLRGYFTFALDQILTYLLMSASSSAATRAYDWESNWGN 260

Query: 149 DEFTEMAS 156
           D+F  MA+
Sbjct: 261 DKFPFMAN 268


>Medtr7g071110.1 | CASP-like protein | HC | chr7:26328733-26330721 |
           20130731
          Length = 202

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 3/153 (1%)

Query: 30  KREVMARKVALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFAY 89
           KRE + ++ +LG R   ++  LISF VMA++K   W    FD+Y+EYRY L++ +++  Y
Sbjct: 49  KREDLIKRGSLGLRGIGLLFSLISFIVMASNKHGDW--KDFDKYEEYRYLLAIAILSSLY 106

Query: 90  AAFQACDLGYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIXXXXXXXXRVDDWQSNWGKD 149
              QA    ++L  G+QLI            DQ++AYLLI         + +       +
Sbjct: 107 TGAQAFRQVHELSTGKQLIKPRMAALIDFFGDQIMAYLLISSASSAIP-ITNRMREGADN 165

Query: 150 EFTEMASXXXXXXXXXXXXXXXXXXISGYNLCT 182
            FT+ ++                  ISGY L T
Sbjct: 166 IFTDASAAAISMSVFAFLCLGASALISGYKLST 198


>Medtr4g013270.1 | CASP ARALYDRAFT-like protein | HC |
           chr4:3676397-3674459 | 20130731
          Length = 187

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 3/154 (1%)

Query: 30  KREVMARKVALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFAY 89
           KRE   ++ +LG R   +   L SF +MA++K  G+ G++FD Y+EYRY L V      Y
Sbjct: 36  KREDSLKRASLGLRGVTLFFSLTSFLLMASNK-HGY-GENFDHYQEYRYLLVVAFFTSIY 93

Query: 90  AAFQACDLGYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIXXXXXXXXRVDDWQSNWGKD 149
              Q     ++L  G  +             DQV+AYLLI          D  + N   D
Sbjct: 94  TGSQVYRQIHELITGNNIFRPTTAAVIDFVGDQVIAYLLISSASTAVPLTDRMREN-DDD 152

Query: 150 EFTEMASXXXXXXXXXXXXXXXXXXISGYNLCTI 183
            FT+ ++                  ISGY L  +
Sbjct: 153 AFTDASAATITMSFFAFTFLALSAIISGYKLSAL 186


>Medtr6g007160.1 | transmembrane protein, putative | HC |
           chr6:1477503-1475465 | 20130731
          Length = 234

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 64/174 (36%), Gaps = 21/174 (12%)

Query: 29  SKREVMARKVALGFRLSEVVLCLISFSVMAA--------DKTQGWSGDSFD--------- 71
           SK+EV      L  R+   V CLI+FSV+ A        +    W    F          
Sbjct: 58  SKKEVKWYVALLVIRVFAFVFCLIAFSVLGASEQRVLVSENLTNWYSSGFTIQTPYEFHW 117

Query: 72  -RYKEYRYCLSVNVIAFAYAAFQACDLGYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIX 130
            ++ E+RY  + NVI F Y+  Q C L   L   +  IN          +DQ LAY+L+ 
Sbjct: 118 YKWDEFRYSFAANVIGFVYSGLQICHLVMYLITKKHTINPKLQGYFNVAIDQTLAYILMS 177

Query: 131 XXXXXXXRVDDWQSNW---GKDEFTEMASXXXXXXXXXXXXXXXXXXISGYNLC 181
                       +  W   G D F EMA+                  +SG  LC
Sbjct: 178 ASSSAATAAHLLKDYWLEHGADTFIEMANASVSMSFLAFGAFALASLVSGIILC 231