Miyakogusa Predicted Gene
- Lj4g3v1511450.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1511450.1 Non Characterized Hit- tr|I3SR96|I3SR96_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,88.84,0,Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal
domain,NULL; NAD(P)-binding Rossmann-fold ,CUFF.49329.1
(472 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g106870.1 | 1-deoxy-D-xylulose 5-phosphate reductoisomeras... 877 0.0
Medtr8g012565.1 | 1-deoxy-D-xylulose 5-phosphate reductoisomeras... 729 0.0
Medtr8g012565.2 | 1-deoxy-D-xylulose 5-phosphate reductoisomeras... 575 e-164
>Medtr4g106870.1 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
HC | chr4:43911321-43906312 | 20130731
Length = 475
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/475 (89%), Positives = 450/475 (94%), Gaps = 3/475 (0%)
Query: 1 MALNLSSPAEVKSSFFTDSFNSSCFTPKFPVSFALKRKGCGGVSGRRIHCSVQT---PPP 57
MALNL SPAE+KS FFTD S+ FTPKFP ALKRK G SG R++CSVQ+ PPP
Sbjct: 1 MALNLYSPAELKSGFFTDPLKSNRFTPKFPGGVALKRKENGTASGTRVYCSVQSTSGPPP 60
Query: 58 AWPGRAVVEPGRKTWEGPKPISIVGCTGSIGTQTLDIVAENPDKFRVVALAAGSNITLLA 117
AWPGRA+ E G KTWEGPKPISIVGCTGSIGTQTLDIVAENPDKFRVVALAAGSNITLL
Sbjct: 61 AWPGRAIPELGNKTWEGPKPISIVGCTGSIGTQTLDIVAENPDKFRVVALAAGSNITLLV 120
Query: 118 DQVRRFKPQLVAVRNESLISELEEALNDLEEKPEIIPGEQGVIEVARHPDAVSVVTGIVG 177
DQV+RFKPQLVAVRNESL++EL+EAL D+EEKPEIIPGEQGVIEVARHPDAV+VVTGIVG
Sbjct: 121 DQVKRFKPQLVAVRNESLLAELQEALKDVEEKPEIIPGEQGVIEVARHPDAVTVVTGIVG 180
Query: 178 CAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAQKHNIKILPADSEHSAIFQCIQGL 237
CAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA+KHN+KILPADSEHSAIFQCIQGL
Sbjct: 181 CAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLARKHNVKILPADSEHSAIFQCIQGL 240
Query: 238 SEGALRRVILTASGGAFRDWPADKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVI 297
+EGALRRVILTASGGAFRDWP +KLKDVKVADALKHPNW+MGKKITVDSATLFNKGLEVI
Sbjct: 241 TEGALRRVILTASGGAFRDWPVEKLKDVKVADALKHPNWSMGKKITVDSATLFNKGLEVI 300
Query: 298 EAHYLFGADYDNIDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPDRIYCS 357
EAHYLFGADYD+IDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPDR+YCS
Sbjct: 301 EAHYLFGADYDDIDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPDRVYCS 360
Query: 358 EVTWPRLDLCKLGSLTFKAPDNVKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEK 417
EVTWPRLDLCKLGSLTFKAPDN+KYPS+NLAYAAGRAGGTMTGVLSAANEKAVEMFIDEK
Sbjct: 361 EVTWPRLDLCKLGSLTFKAPDNIKYPSMNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEK 420
Query: 418 ISYLDIFKVVELTCEKHQNELRTSPSLEEIIHYDLWAREYAASLQNTSSFTPIPA 472
ISYLDIFKVVELTC+KHQ+EL TSPSLEEIIHYDLWAREYAASLQ++SSFTP+ A
Sbjct: 421 ISYLDIFKVVELTCQKHQDELLTSPSLEEIIHYDLWAREYAASLQSSSSFTPVLA 475
>Medtr8g012565.1 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
HC | chr8:3629640-3635402 | 20130731
Length = 470
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/469 (75%), Positives = 408/469 (86%), Gaps = 3/469 (0%)
Query: 1 MALNLSSPAEVKSSFFTDSFNSSCFTPKFPVSFALKRK-GCGGVSGRRIHCSV-QTPPPA 58
MALNL SPA+VK SFF+D N K P SFALKRK G V RR++CS +P PA
Sbjct: 1 MALNLPSPAQVKPSFFSDIINPVITPTKLPGSFALKRKEGDTKVVKRRVYCSAAHSPQPA 60
Query: 59 WPGRAVVEPGR-KTWEGPKPISIVGCTGSIGTQTLDIVAENPDKFRVVALAAGSNITLLA 117
WPG A+ EP KTW+GPKPIS++G TGSIGTQTL+IVAE P++FRVV LAAGSN+TLLA
Sbjct: 61 WPGTAIPEPSDFKTWDGPKPISVLGSTGSIGTQTLNIVAEFPERFRVVGLAAGSNVTLLA 120
Query: 118 DQVRRFKPQLVAVRNESLISELEEALNDLEEKPEIIPGEQGVIEVARHPDAVSVVTGIVG 177
+QVR FKP+LVA+R+ES I EL+EAL ++ KPEIIPGEQGVIEVARHPDA +VVTGIVG
Sbjct: 121 EQVRIFKPELVALRDESKIDELKEALAGIDHKPEIIPGEQGVIEVARHPDAATVVTGIVG 180
Query: 178 CAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAQKHNIKILPADSEHSAIFQCIQGL 237
CAGLKPTVAAIEAGKDIALANKET+IAGG FVLPLA K+NIKILPADSEHSAIFQCIQGL
Sbjct: 181 CAGLKPTVAAIEAGKDIALANKETMIAGGAFVLPLAHKNNIKILPADSEHSAIFQCIQGL 240
Query: 238 SEGALRRVILTASGGAFRDWPADKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVI 297
+GALR++ LT SGGAFR+WPA+K+KD+K+ DALKHP W++G+KIT+DSATLFNKGLEVI
Sbjct: 241 PKGALRKIQLTGSGGAFREWPAEKMKDIKLKDALKHPIWSLGRKITIDSATLFNKGLEVI 300
Query: 298 EAHYLFGADYDNIDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPDRIYCS 357
EAHYLFGA+YD+I+IVIHPQSIIHS++ETQDSSV+AQLG PDMRLP+LYTLSWP+R+YCS
Sbjct: 301 EAHYLFGAEYDDIEIVIHPQSIIHSLVETQDSSVIAQLGLPDMRLPLLYTLSWPERVYCS 360
Query: 358 EVTWPRLDLCKLGSLTFKAPDNVKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEK 417
E+TWPRLDL K G+LTF+APD K+PSVNL YAAGRAGGTMTGVLSAANE AVE+F+ EK
Sbjct: 361 EITWPRLDLTKYGTLTFQAPDTKKFPSVNLCYAAGRAGGTMTGVLSAANEIAVELFVAEK 420
Query: 418 ISYLDIFKVVELTCEKHQNELRTSPSLEEIIHYDLWAREYAASLQNTSS 466
ISYLDIFK+ ELTC +HQ EL TSP+LEEI+HYD WAR+YAA LQ S
Sbjct: 421 ISYLDIFKIAELTCNEHQKELVTSPTLEEILHYDQWARQYAAGLQKALS 469
>Medtr8g012565.2 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
HC | chr8:3629640-3635387 | 20130731
Length = 384
Score = 575 bits (1483), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/377 (74%), Positives = 326/377 (86%), Gaps = 3/377 (0%)
Query: 1 MALNLSSPAEVKSSFFTDSFNSSCFTPKFPVSFALKRK-GCGGVSGRRIHCSV-QTPPPA 58
MALNL SPA+VK SFF+D N K P SFALKRK G V RR++CS +P PA
Sbjct: 1 MALNLPSPAQVKPSFFSDIINPVITPTKLPGSFALKRKEGDTKVVKRRVYCSAAHSPQPA 60
Query: 59 WPGRAVVEPGR-KTWEGPKPISIVGCTGSIGTQTLDIVAENPDKFRVVALAAGSNITLLA 117
WPG A+ EP KTW+GPKPIS++G TGSIGTQTL+IVAE P++FRVV LAAGSN+TLLA
Sbjct: 61 WPGTAIPEPSDFKTWDGPKPISVLGSTGSIGTQTLNIVAEFPERFRVVGLAAGSNVTLLA 120
Query: 118 DQVRRFKPQLVAVRNESLISELEEALNDLEEKPEIIPGEQGVIEVARHPDAVSVVTGIVG 177
+QVR FKP+LVA+R+ES I EL+EAL ++ KPEIIPGEQGVIEVARHPDA +VVTGIVG
Sbjct: 121 EQVRIFKPELVALRDESKIDELKEALAGIDHKPEIIPGEQGVIEVARHPDAATVVTGIVG 180
Query: 178 CAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAQKHNIKILPADSEHSAIFQCIQGL 237
CAGLKPTVAAIEAGKDIALANKET+IAGG FVLPLA K+NIKILPADSEHSAIFQCIQGL
Sbjct: 181 CAGLKPTVAAIEAGKDIALANKETMIAGGAFVLPLAHKNNIKILPADSEHSAIFQCIQGL 240
Query: 238 SEGALRRVILTASGGAFRDWPADKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVI 297
+GALR++ LT SGGAFR+WPA+K+KD+K+ DALKHP W++G+KIT+DSATLFNKGLEVI
Sbjct: 241 PKGALRKIQLTGSGGAFREWPAEKMKDIKLKDALKHPIWSLGRKITIDSATLFNKGLEVI 300
Query: 298 EAHYLFGADYDNIDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPDRIYCS 357
EAHYLFGA+YD+I+IVIHPQSIIHS++ETQDSSV+AQLG PDMRLP+LYTLSWP+R+YCS
Sbjct: 301 EAHYLFGAEYDDIEIVIHPQSIIHSLVETQDSSVIAQLGLPDMRLPLLYTLSWPERVYCS 360
Query: 358 EVTWPRLDLCKLGSLTF 374
E+TWPRLDL K +
Sbjct: 361 EITWPRLDLTKYNRFSL 377