Miyakogusa Predicted Gene

Lj4g3v1478260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1478260.1 Non Characterized Hit- tr|K4B7V5|K4B7V5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,52.63,0.000000000000005,A_tha_TIGR01569: plant integral
membrane protein T,Uncharacterised protein family UPF0497,
trans-mem,CUFF.49301.1
         (77 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0097s0070.1 | CASP POPTRDRAFT-like protein | HC | scaffold0...   102   6e-23
Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC | chr8:37100...    96   7e-21
Medtr4g118810.1 | plant integral membrane protein | HC | chr4:49...    47   4e-06

>Medtr0097s0070.1 | CASP POPTRDRAFT-like protein | HC |
           scaffold0097:39509-37693 | 20130731
          Length = 201

 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 56/77 (72%)

Query: 1   MVVIALDVLGPRSDNQGLYLTLIAIFDMMIMXXXXXXXXXXXFMSELGRNGNSHARWAKI 60
           +V+IALD+LGP+ D +GL L LIAI DM+ M           FMS LGRNGNSHARW KI
Sbjct: 94  LVMIALDILGPQYDYKGLRLALIAILDMLTMALASAGDGAATFMSALGRNGNSHARWDKI 153

Query: 61  CHKFGTYCNRGGGALIA 77
           C KF +YCNRGGGALIA
Sbjct: 154 CDKFESYCNRGGGALIA 170


>Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC |
           chr8:37100964-37099766 | 20130731
          Length = 194

 Score = 95.9 bits (237), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 55/77 (71%)

Query: 1   MVVIALDVLGPRSDNQGLYLTLIAIFDMMIMXXXXXXXXXXXFMSELGRNGNSHARWAKI 60
           +V+IA+ +LGP+  N+GL L LIA+FD M +            MSELGRNGNSHA+W KI
Sbjct: 93  LVMIAMYILGPKFHNKGLQLALIAVFDTMALALASSGDGAATAMSELGRNGNSHAKWNKI 152

Query: 61  CHKFGTYCNRGGGALIA 77
           C KF +YCNRGGG+LIA
Sbjct: 153 CDKFESYCNRGGGSLIA 169


>Medtr4g118810.1 | plant integral membrane protein | HC |
           chr4:49234116-49235835 | 20130731
          Length = 200

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 12  RSDNQGLYLTLIAIFDMMIMXXXXXXXXXXXFMSELGRNGNSHARWAKICHKFGTYCNRG 71
           R  ++  + TLI IFD +++            +  LG  GNSH RW K+C+ F  YC++ 
Sbjct: 111 RGKSKVFWGTLITIFDALMVALLFSGNGAATAIGVLGYQGNSHVRWKKVCNVFDKYCHQV 170

Query: 72  GGALI 76
             ++I
Sbjct: 171 AASII 175