Miyakogusa Predicted Gene

Lj4g3v1476200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1476200.1 Non Characterized Hit- tr|I3RZG9|I3RZG9_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,78.17,0,ApaG-like,ApaG domain; DUF525,ApaG domain; UVR,UVR domain;
APAG,ApaG domain; no description,UVR doma,CUFF.49297.1
         (256 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g105610.1 | CO2+/MG2+ efflux protein ApaG | HC | chr4:4385...   412   e-115
Medtr4g068130.1 | F-box protein SKIP16 | HC | chr4:25445957-2544...    59   6e-09
Medtr4g093590.1 | executer 1 | HC | chr4:37133162-37118168 | 201...    48   8e-06
Medtr4g093590.2 | executer 1 | HC | chr4:37133116-37121655 | 201...    48   8e-06

>Medtr4g105610.1 | CO2+/MG2+ efflux protein ApaG | HC |
           chr4:43850627-43846537 | 20130731
          Length = 266

 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/252 (78%), Positives = 223/252 (88%), Gaps = 9/252 (3%)

Query: 14  LRLLSSDVSVKRR----SNVIVACATEGD-----TRSSFLSRTQTYALLKQQMEVAAKSE 64
           LRL+S +  VKRR    +N++VAC    D     + +SFLSRTQTYALLKQQMEVAAKSE
Sbjct: 15  LRLMSQEARVKRRGGNSNNMVVACGNNSDKDTAPSSTSFLSRTQTYALLKQQMEVAAKSE 74

Query: 65  DYKEAARIRDSLKSFEDEEPVLRLKRLLKEAIADERFQDAASYRDELKKICPHSLLKCSS 124
           DYKEAARIRDSLK FE+EEPVLRL+RL+KEAIADERFQDAASYRDELK+I PHS LKCSS
Sbjct: 75  DYKEAARIRDSLKLFEEEEPVLRLRRLIKEAIADERFQDAASYRDELKRIAPHSFLKCSS 134

Query: 125 DATTLGVRVQVRSVYIEGRSQPSKGLYFFAYRIRISNNSDHPVQLLKRHWIITDANGKAE 184
           DATTLGVRVQVRSVYIEGRSQPSKGLYFFAYRIRI+NNSD  VQLL+RHWIITDANG++E
Sbjct: 135 DATTLGVRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDDTVQLLRRHWIITDANGRSE 194

Query: 185 NVWGIGVVGEQPVIHPRTSFEYSSACPLSTQNGRMEGDFEMIHIESVGSRSFNVVIAPFS 244
           NV GIGVVGEQPV+ PRTSFEYSSACPLST NGRMEG++EMIH++ VGS SFN +IAPFS
Sbjct: 195 NVRGIGVVGEQPVLLPRTSFEYSSACPLSTPNGRMEGEYEMIHVDKVGSPSFNAIIAPFS 254

Query: 245 LSLLGDDEVHTI 256
           L+LLGDD+ +TI
Sbjct: 255 LALLGDDDCNTI 266


>Medtr4g068130.1 | F-box protein SKIP16 | HC |
           chr4:25445957-25441223 | 20130731
          Length = 443

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 122 CSSDATTLGVRVQVRSVYI-EGRS-QPSKGLYFFAYRIRIS--------NNSDHP-VQLL 170
           CS+ A T GV+++  ++ + EG   Q  +  Y F+Y IR+S        N   H   QL 
Sbjct: 300 CST-AVTNGVQIRASALLVPEGVDLQGDREKYLFSYSIRMSLQPQGCVINGMSHSSCQLY 358

Query: 171 KRHWIITDANGKAENVWGIGVVGEQPVIHP-RTSFEYSSACPLSTQNGRMEGDFEMIHIE 229
            RHWII   +    +V G  V+G  P++ P    F Y S  PL T +G +EG F  +   
Sbjct: 359 WRHWIIRANDAVVSDVNGEAVIGMYPLLRPGDKEFVYQSCSPLPTSSGSIEGSFTFVPGR 418

Query: 230 SVGSRS--FNVVIAPFSLSL 247
            V  R   F V +A F L L
Sbjct: 419 LVDPRGDPFLVQVAHFPLQL 438


>Medtr4g093590.1 | executer 1 | HC | chr4:37133162-37118168 |
           20130731
          Length = 708

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 40/59 (67%)

Query: 52  LLKQQMEVAAKSEDYKEAARIRDSLKSFEDEEPVLRLKRLLKEAIADERFQDAASYRDE 110
           +LK Q+  A   EDY+EAA+++ ++ +  + + V ++K LLK AI +ER+ DAA  RD+
Sbjct: 128 ILKSQLRHAVYVEDYEEAAKLKVAIAAAANNDSVGKVKTLLKRAIKEERYNDAAFLRDK 186


>Medtr4g093590.2 | executer 1 | HC | chr4:37133116-37121655 |
           20130731
          Length = 708

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 40/59 (67%)

Query: 52  LLKQQMEVAAKSEDYKEAARIRDSLKSFEDEEPVLRLKRLLKEAIADERFQDAASYRDE 110
           +LK Q+  A   EDY+EAA+++ ++ +  + + V ++K LLK AI +ER+ DAA  RD+
Sbjct: 128 ILKSQLRHAVYVEDYEEAAKLKVAIAAAANNDSVGKVKTLLKRAIKEERYNDAAFLRDK 186