Miyakogusa Predicted Gene

Lj4g3v1476170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1476170.1 Non Characterized Hit- tr|D8RKC5|D8RKC5_SELML
Putative uncharacterized protein (Fragment) OS=Selagin,43.2,2e-16,
,CUFF.49294.1
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g105570.1 | transmembrane protein, putative | HC | chr4:43...   290   4e-79
Medtr4g105580.1 | hypothetical protein | HC | chr4:43830470-4383...    75   3e-14

>Medtr4g105570.1 | transmembrane protein, putative | HC |
           chr4:43823647-43826922 | 20130731
          Length = 203

 Score =  290 bits (743), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 142/168 (84%), Positives = 155/168 (92%), Gaps = 2/168 (1%)

Query: 1   MLYGGSKEAAASVSKDAEVMLKLGSTEDKRAQHRLMRDAMEKRFLRVTRGSIVGGVRLGM 60
           MLYGGS+EA++SVSKDAEVMLKLGSTEDKRAQ+RLMRDAMEKRF+RVTRG++VGGVRLGM
Sbjct: 37  MLYGGSREASSSVSKDAEVMLKLGSTEDKRAQYRLMRDAMEKRFIRVTRGALVGGVRLGM 96

Query: 61  FTAAFFGIQNLLEEKRGVHDVFNIIGAGSATASAFGLILPGSLHWRARNMALGSVLGAAF 120
           FTAAF+ IQNLL EKRGVHDVFN++GAGSATASAFGLI+PGS  WRARNMALGSVLGAAF
Sbjct: 97  FTAAFYNIQNLLAEKRGVHDVFNVVGAGSATASAFGLIMPGSFRWRARNMALGSVLGAAF 156

Query: 121 CFPLGWIHLKLVEKANEANPAIHPHLQQREVKGGVSAAIERLEGNLSK 168
           CFPLGWIHLK+VE ANE N A H    QREVKGGVSAAIERLE NL+K
Sbjct: 157 CFPLGWIHLKMVEIANEENLAAHS--DQREVKGGVSAAIERLEENLNK 202


>Medtr4g105580.1 | hypothetical protein | HC |
           chr4:43830470-43831864 | 20130731
          Length = 112

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 7/95 (7%)

Query: 63  AAFFGIQNLLEEKRGVHDVFNIIGAGSATASAFGLILPGSLHWRARNMALGSVLGAAFCF 122
           A++ GIQNLL  K GV + FN++ A S T  A G + PGS+  RARNMAL SV   A  F
Sbjct: 13  ASYVGIQNLLSWKLGVDEPFNVMAAASLTFGARGFMKPGSIRSRARNMALYSVKAGALGF 72

Query: 123 PLGWIHLKLVEKANEANPAI-------HPHLQQRE 150
           P+G I +KL+E     +P+I       +PH   +E
Sbjct: 73  PIGMIQMKLMESGIMVSPSISKSPSAENPHSVVKE 107