Miyakogusa Predicted Gene

Lj4g3v1474120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1474120.1 Non Characterized Hit- tr|B9RAZ5|B9RAZ5_RICCO
Zinc finger protein, putative OS=Ricinus communis
GN=R,38.64,7e-19,seg,NULL; coiled-coil,NULL,CUFF.49286.1
         (170 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g105530.1 | histidine kinase-, DNA gyrase B | HC | chr4:43...   113   1e-25
Medtr3g077540.2 | histidine kinase-, DNA gyrase B | HC | chr3:34...    99   2e-21
Medtr3g077540.1 | histidine kinase-, DNA gyrase B | HC | chr3:34...    99   2e-21

>Medtr4g105530.1 | histidine kinase-, DNA gyrase B | HC |
           chr4:43806717-43795114 | 20130731
          Length = 654

 Score =  113 bits (282), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 85/160 (53%), Gaps = 15/160 (9%)

Query: 1   MALEYWDYHCHLIGYPEVKHKAPVSQCFSSMQEPL------AIVIXXXXXXXXXXXXRYE 54
           M  EYWD   H IGY + K + PV     SM++PL      A+                E
Sbjct: 497 MTWEYWDRFSHKIGYQKRKRRNPVGLPNPSMKKPLVTEKPVALDNCSSPVPISNAQDGSE 556

Query: 55  QAPLAKRKTRGFIDPHKAKRQSAELNVIGVSCSQNVQTMASPADQVVDQEAINIIEANKN 114
           Q  L KRKTRGF D H+ KRQ+ E         +NVQT ASPADQ+VDQE +N++E NK 
Sbjct: 557 QTSLTKRKTRGFTDHHEMKRQAVE---------KNVQTTASPADQMVDQEIVNLLEFNKQ 607

Query: 115 LIAXXXXXXXXXXXXXXKVAQLRSKVEEAQHEYNRLLAEA 154
           L A              +V QLRS++EEA+ EYNRLL EA
Sbjct: 608 LNADCFAFEKMEEELNLEVTQLRSRLEEAKLEYNRLLDEA 647


>Medtr3g077540.2 | histidine kinase-, DNA gyrase B | HC |
           chr3:34846655-34833326 | 20130731
          Length = 643

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 76/154 (49%), Gaps = 21/154 (13%)

Query: 1   MALEYWDYHCHLIGY-PEVKHKAPVSQCFSSMQEPLAIVIXXXXXXXXXXXXRYEQAPLA 59
           M  EYWD HC LIGY P  K + PV+Q    +Q+ L                 Y      
Sbjct: 501 MTSEYWDTHCRLIGYRPAAKPQTPVAQSHPPLQKSL----------------EYHN---- 540

Query: 60  KRKTRGFIDPHKAKRQSAELNVIGVSCSQNVQTMASPADQVVDQEAINIIEANKNLIAXX 119
           KRKT   ID    K+ ++E  V G   SQ  Q   +PADQVV+ E I +++ N  L A  
Sbjct: 541 KRKTDELIDLQNRKKHASEECVTGTGFSQKKQITTTPADQVVNPETITLMQENNKLHANC 600

Query: 120 XXXXXXXXXXXXKVAQLRSKVEEAQHEYNRLLAE 153
                       KV QLRSK+EEA+HEY+RLLAE
Sbjct: 601 LEFEKREEELNLKVTQLRSKIEEARHEYDRLLAE 634


>Medtr3g077540.1 | histidine kinase-, DNA gyrase B | HC |
           chr3:34846699-34833381 | 20130731
          Length = 643

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 76/154 (49%), Gaps = 21/154 (13%)

Query: 1   MALEYWDYHCHLIGY-PEVKHKAPVSQCFSSMQEPLAIVIXXXXXXXXXXXXRYEQAPLA 59
           M  EYWD HC LIGY P  K + PV+Q    +Q+ L                 Y      
Sbjct: 501 MTSEYWDTHCRLIGYRPAAKPQTPVAQSHPPLQKSL----------------EYHN---- 540

Query: 60  KRKTRGFIDPHKAKRQSAELNVIGVSCSQNVQTMASPADQVVDQEAINIIEANKNLIAXX 119
           KRKT   ID    K+ ++E  V G   SQ  Q   +PADQVV+ E I +++ N  L A  
Sbjct: 541 KRKTDELIDLQNRKKHASEECVTGTGFSQKKQITTTPADQVVNPETITLMQENNKLHANC 600

Query: 120 XXXXXXXXXXXXKVAQLRSKVEEAQHEYNRLLAE 153
                       KV QLRSK+EEA+HEY+RLLAE
Sbjct: 601 LEFEKREEELNLKVTQLRSKIEEARHEYDRLLAE 634