Miyakogusa Predicted Gene

Lj4g3v1453030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1453030.1 Non Characterized Hit- tr|C5YYH0|C5YYH0_SORBI
Putative uncharacterized protein Sb09g001173
OS=Sorghu,30.22,2e-18,coiled-coil,NULL; Spindle_Spc25,Chromosome
segregation protein Spc25; FAMILY NOT NAMED,NULL,CUFF.49281.1
         (307 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g105330.1 | chromosome segregation protein Spc25 | HC | ch...   372   e-103

>Medtr4g105330.1 | chromosome segregation protein Spc25 | HC |
           chr4:43700242-43695800 | 20130731
          Length = 305

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 226/309 (73%), Gaps = 6/309 (1%)

Query: 1   MESPTSVC--DTEIPLQTQTIDSFTASHAKSLQSLRDTAQQTAQHRVQLEEVKGKLREAE 58
           ME  TS    D+EI  Q  TID+F AS +KS QS++ T QQTA+ +VQLEEVK KL+E E
Sbjct: 1   MECSTSSTHRDSEITQQIHTIDAFAASVSKSFQSIKTTGQQTAKTQVQLEEVKDKLKEVE 60

Query: 59  DDLVKALSVKTRKEARRMALLDAIASAKSRVDELSTSVQEHRAKTQEYXXXXXXXXXXXX 118
           D+LVK L+ KTRKEA+RMALLDAIASAK+RV  L++S+QE R + QEY            
Sbjct: 61  DELVKVLAEKTRKEAKRMALLDAIASAKARVGNLNSSIQEVRTRKQEYISFLSQQSLALA 120

Query: 119 XXEGKLNECIEQKDETQEAMSWYNRVLGFHVKGGRGVKFTFKNINLNNPNEEYFFTIFHQ 178
             EG+LNE IE  DET EA+SWYNRVLGFHVKGGRGVKFTFKNINL NPNEEY FT+FH 
Sbjct: 121 ASEGRLNEGIEHTDETHEAISWYNRVLGFHVKGGRGVKFTFKNINLKNPNEEYSFTVFHD 180

Query: 179 NNTYTLLNCEPSTDDIKELIHELNKTNDLFKFVRVMRKKFQEAVGQDVTTRGQVAHEESA 238
            NTYTLL CEPS D I+EL+HELNKT+ LFKFVRVMRKKFQEA+ Q       V   ESA
Sbjct: 181 KNTYTLLRCEPSFDGIEELVHELNKTDGLFKFVRVMRKKFQEALVQGSLVLTTVNPGESA 240

Query: 239 FISASAPVLSMSSVRSDSTTKENEHRDEPAEGDTQIKKKQLLHRRVKSGVLSPGSASSVR 298
           FIS+SAP    +SVRSDSTT ENEH  E +    Q+KKKQ + RR     LSP SASSVR
Sbjct: 241 FISSSAP---GTSVRSDSTTMENEHEVERSGSSAQLKKKQ-VRRRKSLARLSPDSASSVR 296

Query: 299 QSPRLKARK 307
           QSPRLK R+
Sbjct: 297 QSPRLKTRR 305