Miyakogusa Predicted Gene
- Lj4g3v1440680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1440680.1 Non Characterized Hit- tr|J3MDD2|J3MDD2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G2,38.89,1e-18,Usp,UspA; no description,Rossmann-like
alpha/beta/alpha sandwich fold; Adenine nucleotide alpha
hydr,CUFF.49246.1
(253 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g105090.1 | universal stress family protein | HC | chr4:43... 336 1e-92
Medtr4g134140.1 | universal stress family protein | HC | chr4:56... 102 3e-22
Medtr4g134130.1 | universal stress family protein | HC | chr4:56... 95 7e-20
Medtr3g008280.3 | U-box kinase family protein | HC | chr3:141154... 62 5e-10
Medtr3g008280.1 | U-box kinase family protein | HC | chr3:141154... 62 5e-10
Medtr7g014950.1 | U-box kinase family protein | HC | chr7:448981... 60 2e-09
Medtr3g008270.1 | U-box kinase family protein | HC | chr3:140430... 58 7e-09
Medtr2g096850.1 | U-box kinase family protein | HC | chr2:413905... 58 9e-09
Medtr4g125930.1 | U-box kinase family protein | HC | chr4:522944... 57 2e-08
Medtr5g032010.2 | U-box kinase family protein | HC | chr5:137219... 50 2e-06
Medtr7g077780.1 | U-box kinase family protein | HC | chr7:293581... 50 2e-06
Medtr3g008280.2 | U-box kinase family protein | HC | chr3:141154... 50 3e-06
Medtr8g101300.1 | adenine nucleotide alpha hydrolase-like domain... 49 3e-06
Medtr5g032010.1 | U-box kinase family protein | HC | chr5:137219... 49 4e-06
>Medtr4g105090.1 | universal stress family protein | HC |
chr4:43538822-43541072 | 20130731
Length = 303
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 170/244 (69%), Positives = 198/244 (81%), Gaps = 14/244 (5%)
Query: 1 MEHKDHTPTVAKDYYSRSIWWSQTAPAVGDHKSSDRNGVNGIYFADGKDWYNNSQEIVTP 60
ME+KD TP AKDYYSRSIWWS+TA A DHK+ NG QEI+TP
Sbjct: 1 MENKDDTPKEAKDYYSRSIWWSETAQAFEDHKTYATNGTYSF------------QEILTP 48
Query: 61 EISDTFGELKDLTSTRNIVDEL--ENGSDEIGEYSRYTSRMLSTEIVEIVEDGRSITENK 118
EIS+TFG+LK+L+S +N V E+ + GS+E G++ Y+ ++LSTEIVEIVEDG+SIT K
Sbjct: 49 EISETFGDLKNLSSNKNRVHEIVPDTGSEENGKFVPYSVQLLSTEIVEIVEDGKSITIKK 108
Query: 119 DRKVDDLYVAVGKDDLDVVKWALDHAVSPGSRIFLVHVSPPITLIPTPVGMFERSQLAPN 178
DR+VDDLYVAVG+DD+DVVKW LDHAVSPG+RIFLVHVSPPITLIPTPVGM RSQL P
Sbjct: 109 DRRVDDLYVAVGEDDMDVVKWVLDHAVSPGARIFLVHVSPPITLIPTPVGMLGRSQLTPQ 168
Query: 179 QVRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
QVR Y+NEV+NKRKDLLQKYIQ+STEAKV AETL+LES D GKAILDLISILNITNLV+G
Sbjct: 169 QVRRYLNEVNNKRKDLLQKYIQLSTEAKVTAETLILESKDKGKAILDLISILNITNLVLG 228
Query: 239 IKKL 242
+KKL
Sbjct: 229 VKKL 232
>Medtr4g134140.1 | universal stress family protein | HC |
chr4:56160044-56162081 | 20130731
Length = 313
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 81/123 (65%), Gaps = 7/123 (5%)
Query: 123 DDLYVAVGKD------DLDVVKWALDHAVSP-GSRIFLVHVSPPITLIPTPVGMFERSQL 175
D +YVAVG + ++ + W L HAV+P + ++L+HV P + LIPTP+G RS +
Sbjct: 95 DVVYVAVGTNINGGSSSMEALSWTLKHAVTPETTTVYLLHVFPQVKLIPTPLGKIPRSHV 154
Query: 176 APNQVRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNL 235
V +++ +V +KRK LLQK++++ E++V E +L+E ++ G+AI+DL+ LNI L
Sbjct: 155 NVEHVNIHLTQVKSKRKLLLQKFMKLCIESEVKVEMMLIEGDNVGEAIVDLVGNLNIRKL 214
Query: 236 VIG 238
VIG
Sbjct: 215 VIG 217
>Medtr4g134130.1 | universal stress family protein | HC |
chr4:56157909-56159319 | 20130731
Length = 254
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 14/170 (8%)
Query: 86 SDEIGEYSRYTSRMLSTEIVEIVEDGRSITENKDRKVDD-----LYVAVGKDD--LDVVK 138
S EI E ++S ++ EI E SI D +++ +YVAVGK + ++ +
Sbjct: 6 STEIMEQHSHSSEIMLNNNNEIEEVDDSIETFDDDEIEQAAESCVYVAVGKSNTSMEALS 65
Query: 139 WALDHAV-----SPGSRIFLVHVSPPITLIPTP--VGMFERSQLAPNQVRLYINEVHNKR 191
W L + + + ++L+HV P I IP P VGM R+Q++ QV Y+ + +KR
Sbjct: 66 WTLTNLFPITHSTNNTILYLIHVFPEIKHIPNPLGVGMVPRNQVSVEQVESYMEQEKDKR 125
Query: 192 KDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIGIKK 241
+ LL K++Q + +KV +T+L+ES+ KAILDLI IL I NL+IG K
Sbjct: 126 RQLLHKFLQSCSLSKVKVDTILIESDFVAKAILDLIPILQINNLIIGANK 175
>Medtr3g008280.3 | U-box kinase family protein | HC |
chr3:1411541-1405800 | 20130731
Length = 809
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 136 VVKWALDHAVSPGSRIF-LVHVSPPITLIPTPVG-MFERSQLAPNQVRLYINEVHNKRKD 193
VV+WAL+ V G IF L+HV I +PTP+G M SQ+ + Y E+ +
Sbjct: 37 VVQWALNKFVPEGMIIFKLIHVHAGIVGVPTPMGNMLPISQVRDDVAAAYKKEIECETNQ 96
Query: 194 LLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
+L + QM + KV E +++ES+D A+ + ++ +T LV+G
Sbjct: 97 MLLPFKQMCEQRKVHVEVVVIESDDVASAVAEEVTKYAVTKLVVG 141
>Medtr3g008280.1 | U-box kinase family protein | HC |
chr3:1411541-1405800 | 20130731
Length = 809
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 136 VVKWALDHAVSPGSRIF-LVHVSPPITLIPTPVG-MFERSQLAPNQVRLYINEVHNKRKD 193
VV+WAL+ V G IF L+HV I +PTP+G M SQ+ + Y E+ +
Sbjct: 37 VVQWALNKFVPEGMIIFKLIHVHAGIVGVPTPMGNMLPISQVRDDVAAAYKKEIECETNQ 96
Query: 194 LLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
+L + QM + KV E +++ES+D A+ + ++ +T LV+G
Sbjct: 97 MLLPFKQMCEQRKVHVEVVVIESDDVASAVAEEVTKYAVTKLVVG 141
>Medtr7g014950.1 | U-box kinase family protein | HC |
chr7:4489812-4487721 | 20130731
Length = 145
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 136 VVKWALDHAVSPGSRIF-LVHVSPPITLIPTPVGMF-ERSQLAPNQVRLYINEVHNKRKD 193
V++WALD V G IF L+HV I ++PTP+G F SQ+ + Y E+ +
Sbjct: 31 VLQWALDKFVPKGMIIFKLIHVHAGIVVVPTPMGNFLPISQVCDDVAATYKKEIELETNQ 90
Query: 194 LLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
+ + +M + KV E +++ES+D A+ + + IT LV+G
Sbjct: 91 MFLPFKKMCEQRKVHVEVVVIESDDVASAVAEEVMKYAITKLVVG 135
>Medtr3g008270.1 | U-box kinase family protein | HC |
chr3:1404300-1397568 | 20130731
Length = 797
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 116 ENKDRKVDDLYVAVGKDDLDVVKWALDHAVSPGSRIF-LVHVSPPITLIPTPVG-MFERS 173
EN V L + K VV+WALD V G IF L+HV IT +PTP+G + S
Sbjct: 9 ENNKSSVVGLAIKGNKKSKYVVQWALDKFVHEGISIFKLIHVRAVITGVPTPMGEVLPLS 68
Query: 174 QLAPNQVRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNIT 233
Q+ + + EV + +L + + + KV + +++ES+D A+ + ++ IT
Sbjct: 69 QVRNDVATAFKREVEWQTNQMLLPFKSLCEQRKVHVDVVVIESDDVATAVAEEVAREAIT 128
Query: 234 NLVIG 238
LV+G
Sbjct: 129 KLVLG 133
>Medtr2g096850.1 | U-box kinase family protein | HC |
chr2:41390581-41396138 | 20130731
Length = 810
Score = 57.8 bits (138), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 125 LYVAVGKD---DLDVVKWALDHAVSPGSRIFLVHVSPPITLIPTPVGMFERSQLAPNQVR 181
+++AVGK +++W +H + + I L+HV P IPT +G SQ P V
Sbjct: 31 VHIAVGKSLHKTTTLLQWTFNHFQN--AEIVLIHVYQPSPFIPTLLGKMPASQANPEVVS 88
Query: 182 LYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
+ E + KY+ + AKV A ++ E++ K I+DL+ NI L IG
Sbjct: 89 AFRREEREQTMRFTDKYLSICFAAKVKASVIVTEADKIQKGIVDLVVKHNIRKLAIG 145
>Medtr4g125930.1 | U-box kinase family protein | HC |
chr4:52294411-52288637 | 20130731
Length = 764
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 128 AVGKDDLDVVKWALDHAVSPGSRIFLVHVSPPITLIPTPVGMF-ERSQLAPNQVRLYINE 186
K ++WA+++ V R+ LVHV P IT IPTP G + S+ + Y+ +
Sbjct: 16 GAAKGSRRALQWAMENVVPQADRLILVHVIPKITSIPTPAGGYIPISEADAHAFAAYVQD 75
Query: 187 VHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
V K +++ + ++ + ET LLE ++ A+L IS + LV+G
Sbjct: 76 VKQKSEEIFVSFKKLCESNTI--ETFLLEDDNPANALLSFISESGVQILVLG 125
>Medtr5g032010.2 | U-box kinase family protein | HC |
chr5:13721978-13727046 | 20130731
Length = 572
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 121 KVDDLYVAVG---KDDLDVVKWALDHAVSPGSRIFLVHVSPPIT--LIPTPVGMFERSQL 175
+++ +YVAVG +D + + WAL S I ++HV+ I+ + TP G L
Sbjct: 5 QLEKIYVAVGDDAQDGFNTLNWALKKWKSHPISIVILHVTHNISKEYVYTPFGKLPARSL 64
Query: 176 APNQVRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESND--TGKAILDLISILNIT 233
++ + + K L KYI KV+AE L ++ D K ++DLI+ L IT
Sbjct: 65 NDEKLEALRKDEKERIKKLFSKYIAFC--GKVSAEILEVKKFDEPMQKRVIDLITELEIT 122
Query: 234 NLVIGI 239
LV+G
Sbjct: 123 KLVMGF 128
>Medtr7g077780.1 | U-box kinase family protein | HC |
chr7:29358145-29364475 | 20130731
Length = 896
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 125 LYVAVGKD----DLDVVKWALDHAVSPGSRIFLVHVSPPITLIPTPVGMFERSQLAPNQV 180
+ VAV KD L+++ WA+ + S G +I ++ V P T+IP F S L +V
Sbjct: 52 ICVAVSKDVKESKLNLI-WAIQN--SGGKKICILFVHVPATMIPLMGAKFPASSLKDQEV 108
Query: 181 RLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
R Y L +Y+++ V AE L +E + K I++LIS I L++G
Sbjct: 109 RAYREMERQNVHKTLDEYLRICQRMGVRAEKLHIEMENIEKGIIELISQHGIRKLIMG 166
>Medtr3g008280.2 | U-box kinase family protein | HC |
chr3:1411541-1405800 | 20130731
Length = 801
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 136 VVKWALDHAVSPGSRIF-LVHVSPPITLIPTPVGMFERSQLAPNQVRLYINEVHNKRKDL 194
VV+WAL+ V G IF L+HV ++P SQ+ + Y E+ + +
Sbjct: 37 VVQWALNKFVPEGMIIFKLIHVHAVGNMLPI-------SQVRDDVAAAYKKEIECETNQM 89
Query: 195 LQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
L + QM + KV E +++ES+D A+ + ++ +T LV+G
Sbjct: 90 LLPFKQMCEQRKVHVEVVVIESDDVASAVAEEVTKYAVTKLVVG 133
>Medtr8g101300.1 | adenine nucleotide alpha hydrolase-like domain
kinase | HC | chr8:42519698-42523786 | 20130731
Length = 801
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 112 RSITENKDRKVDDLYVAV--GKDDLDVVKWALDHAVSPGSRIFLVHVSPPITLIPTPVGM 169
RSI E K + VA+ K KWA+D+ + + LVHV + IPT G
Sbjct: 3 RSIQEKKLAAGRVVAVAIENNKTSQYAAKWAVDNLLPKDQHLLLVHVRQKASSIPTTTGS 62
Query: 170 FERSQLAPNQVRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISI 229
+ R Y+ ++ N+ K+L + + + +LLE D KAI++ I
Sbjct: 63 HVSVDANDDVGRAYMRQMDNESKELFSSFRVFCNRKNILCKEVLLEDMDVSKAIIEGIRE 122
Query: 230 LNITNLVIG 238
+I LV+G
Sbjct: 123 YSIELLVLG 131
>Medtr5g032010.1 | U-box kinase family protein | HC |
chr5:13721978-13727046 | 20130731
Length = 808
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 121 KVDDLYVAVG---KDDLDVVKWALDHAVSPGSRIFLVHVSPPIT--LIPTPVGMFERSQL 175
+++ +YVAVG +D + + WAL S I ++HV+ I+ + TP G L
Sbjct: 5 QLEKIYVAVGDDAQDGFNTLNWALKKWKSHPISIVILHVTHNISKEYVYTPFGKLPARSL 64
Query: 176 APNQVRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESND--TGKAILDLISILNIT 233
++ + + K L KYI KV+AE L ++ D K ++DLI+ L IT
Sbjct: 65 NDEKLEALRKDEKERIKKLFSKYIAFC--GKVSAEILEVKKFDEPMQKRVIDLITELEIT 122
Query: 234 NLVIGI 239
LV+G
Sbjct: 123 KLVMGF 128