Miyakogusa Predicted Gene
- Lj4g3v1427520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1427520.1 Non Characterized Hit- tr|K3Y5Y0|K3Y5Y0_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009349,31.1,3e-18,OVARIAN CARCINOMA ANTIGEN CA125-RELATED,NULL;
UBA,Ubiquitin-associated/translation elongation factor,CUFF.49280.1
(909 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g104880.1 | ubiquitin-associated/TS-N domain protein, puta... 512 e-145
Medtr4g104880.2 | ubiquitin-associated/TS-N domain protein, puta... 391 e-108
Medtr4g104900.1 | PB1-Joka2 domain protein | HC | chr4:43468606-... 97 1e-19
Medtr4g104890.1 | PB1 domain protein | HC | chr4:43460545-434595... 88 3e-17
Medtr4g104940.1 | PB1-Joka2 domain protein | LC | chr4:43477083-... 87 7e-17
Medtr4g104990.1 | PB1 domain protein | LC | chr4:43494744-434939... 79 2e-14
Medtr4g104960.1 | PB1-Joka2 domain protein | LC | chr4:43483640-... 78 4e-14
Medtr4g104980.1 | PB1 domain protein | LC | chr4:43487533-434869... 69 2e-11
Medtr4g104950.1 | PB1 domain protein | LC | chr4:43479102-434786... 60 1e-08
>Medtr4g104880.1 | ubiquitin-associated/TS-N domain protein,
putative | HC | chr4:43453771-43448823 | 20130731
Length = 877
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 301/597 (50%), Positives = 354/597 (59%), Gaps = 88/597 (14%)
Query: 378 DLNTHPCFPSSSHSTNVNSAPLSPAGCGCKMCTDDSFAGKGECCGTSTSSGAPRNSSTQT 437
DLN PC P SS TNVN S A S KG P N++T+
Sbjct: 304 DLNVLPCDPYSS--TNVNRVSPSSAVPVSDDKGKSSIDDKGNFV-------FPNNNATKN 354
Query: 438 TANWFGPPIQFPFSGTNTFHSGASPIGNCPVSSLPSFKRSHSHNQAMRGMFHKGVRCDGC 497
F PI PFSGT+T HS P+GN +S FKRSH+H+ A+ GMFHKGVRCDGC
Sbjct: 355 PTLGFSAPIDCPFSGTHTLHSMPPPLGNFRISP---FKRSHAHSDALNGMFHKGVRCDGC 411
Query: 498 GVYPITGSRFKSKVKENYDLCIICFNEMGNKADYIRMDRPESALAGPRRTNEHTKKIQ-- 555
GVYPITG RFKSKVKENYDLCIICFNEMGN+ DYIRMDRP S PR + ++TK+ +
Sbjct: 412 GVYPITGPRFKSKVKENYDLCIICFNEMGNQIDYIRMDRPAS-FRSPRCSYQNTKEFRHP 470
Query: 556 TIPPC------LNRRARPKLDSRFILDVNIIDGTMMAPSTAFTKIWRMRNNGTSVWPKGT 609
IPP L++ A+ KLDSRFILDVN+IDGTMMAPSTAFTKIWRMRNNGTSVWPKGT
Sbjct: 471 KIPPPIFKTGPLSKHAKSKLDSRFILDVNVIDGTMMAPSTAFTKIWRMRNNGTSVWPKGT 530
Query: 610 ELVWIGGDEFCDSTAVKLEAPEDGVPVGNEIDIAVDFRAPQLPGRYISHWRMASPSGHEF 669
+LVWIGGD+ DS +V LE PEDGV V E+DIAVDFRAPQLPGRYIS+WRMAS SGH+F
Sbjct: 531 QLVWIGGDKLSDSLSVDLEVPEDGVSVEKELDIAVDFRAPQLPGRYISYWRMASLSGHKF 590
Query: 670 GQCVWVLIQVDASVMDTTSDSSQNLNLNIPLDVSSSKGPQSIDINAQPIEDDASFQQYNP 729
GQ VWVLIQVDAS+ D+ DSSQ LNLNIPL V SS+GP+ IDIN QPIEDD Q NP
Sbjct: 591 GQRVWVLIQVDASLKDSFYDSSQGLNLNIPLGVGSSEGPRVIDINVQPIEDDVFHQPQNP 650
Query: 730 SAPTEPAEPVNQMADVNQMVDEEPRQEKSVDEFAENVDAFVDXXXXXXXXXXXXXYLPYP 789
+AP EP VNQMVD+E + E+ +EF N +FV + YP
Sbjct: 651 NAPPEP---------VNQMVDKE-QWEELGNEFPTNETSFVGPAASAPAISASPSSISYP 700
Query: 790 NVDI--------DMAETVSLPGPIQQT-------------------SAADAPSSS----- 817
+D + T P T +A APSSS
Sbjct: 701 IIDFSGTAPAVPSFSGTAPAATPFSGTAPAATPFSGTAPAATPFSGTAPAAPSSSGTAPA 760
Query: 818 --------------------IGIGGNNPVEEALLKE-----LDEMGFKQVDLNKEILRNN 852
+ + ++ L++E L+ MGFKQVDLNKE+LR
Sbjct: 761 APSFSGTAPAFHSNQQTSTLDALSSSQSMDNDLVEEALLKELEAMGFKQVDLNKEVLRMT 820
Query: 853 GYNLEQAIVDLCDESGWDPILEELKEMGFGXXXXXXXXXXXXXGSIMGVVMDLISKE 909
YNLEQ+I +LC WDP+L+EL EMGF GSI VVMDL++ E
Sbjct: 821 DYNLEQSIDELCGVLDWDPLLQELHEMGFRDKETNRRLLMKNDGSIKRVVMDLLNGE 877
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/203 (52%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 1 MESSLVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDG 60
M+SSLVIK KYGD LRRFN V ENNRLDLNM GLR+KICSI++F AD L L YVDEDG
Sbjct: 1 MDSSLVIKAKYGDALRRFNVRVDENNRLDLNMVGLRSKICSIYNFPADVNLTLRYVDEDG 60
Query: 61 XXXXXXXXXXXXXXMRQKLKFLKIDVKMVNDX-XXXXXXXXXXXXTPLRSPPVSNPFAGG 119
MRQ+LKFLKIDV+M+N TPL PPVS+PF
Sbjct: 61 DLVNLVDDDDLHDVMRQQLKFLKIDVQMINQSGAKSDAGGSSGSATPLSYPPVSDPFL-- 118
Query: 120 DFGKADVFDALPEPLREXXXXXXXXXXXXXXXXXTLADSITKIGQSILNSHPQPHVATGT 179
+F KAD ALPEP+RE +ADSI+KIGQSILN Q HVA+GT
Sbjct: 119 NFVKADALQALPEPIREALYSSFSKAASSNPVLANIADSISKIGQSILNPQGQSHVASGT 178
Query: 180 GSANSVPEASATSE-KTPQPPHV 201
S N +P S T + K PQ P V
Sbjct: 179 SSKNGLPSESVTPKAKGPQSPCV 201
>Medtr4g104880.2 | ubiquitin-associated/TS-N domain protein,
putative | HC | chr4:43453733-43449075 | 20130731
Length = 773
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/323 (63%), Positives = 231/323 (71%), Gaps = 21/323 (6%)
Query: 378 DLNTHPCFPSSSHSTNVNSAPLSPAGCGCKMCTDDSFAGKGECCGTSTSSGAPRNSSTQT 437
DLN PC P SS TNVN S A S KG P N++T+
Sbjct: 304 DLNVLPCDPYSS--TNVNRVSPSSAVPVSDDKGKSSIDDKGNFV-------FPNNNATKN 354
Query: 438 TANWFGPPIQFPFSGTNTFHSGASPIGNCPVSSLPSFKRSHSHNQAMRGMFHKGVRCDGC 497
F PI PFSGT+T HS P+GN +S FKRSH+H+ A+ GMFHKGVRCDGC
Sbjct: 355 PTLGFSAPIDCPFSGTHTLHSMPPPLGNFRISP---FKRSHAHSDALNGMFHKGVRCDGC 411
Query: 498 GVYPITGSRFKSKVKENYDLCIICFNEMGNKADYIRMDRPESALAGPRRTNEHTKKIQ-- 555
GVYPITG RFKSKVKENYDLCIICFNEMGN+ DYIRMDRP S PR + ++TK+ +
Sbjct: 412 GVYPITGPRFKSKVKENYDLCIICFNEMGNQIDYIRMDRPAS-FRSPRCSYQNTKEFRHP 470
Query: 556 TIPPC------LNRRARPKLDSRFILDVNIIDGTMMAPSTAFTKIWRMRNNGTSVWPKGT 609
IPP L++ A+ KLDSRFILDVN+IDGTMMAPSTAFTKIWRMRNNGTSVWPKGT
Sbjct: 471 KIPPPIFKTGPLSKHAKSKLDSRFILDVNVIDGTMMAPSTAFTKIWRMRNNGTSVWPKGT 530
Query: 610 ELVWIGGDEFCDSTAVKLEAPEDGVPVGNEIDIAVDFRAPQLPGRYISHWRMASPSGHEF 669
+LVWIGGD+ DS +V LE PEDGV V E+DIAVDFRAPQLPGRYIS+WRMAS SGH+F
Sbjct: 531 QLVWIGGDKLSDSLSVDLEVPEDGVSVEKELDIAVDFRAPQLPGRYISYWRMASLSGHKF 590
Query: 670 GQCVWVLIQVDASVMDTTSDSSQ 692
GQ VWVLIQVDAS+ D+ DSSQ
Sbjct: 591 GQRVWVLIQVDASLKDSFYDSSQ 613
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/203 (52%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 1 MESSLVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDG 60
M+SSLVIK KYGD LRRFN V ENNRLDLNM GLR+KICSI++F AD L L YVDEDG
Sbjct: 1 MDSSLVIKAKYGDALRRFNVRVDENNRLDLNMVGLRSKICSIYNFPADVNLTLRYVDEDG 60
Query: 61 XXXXXXXXXXXXXXMRQKLKFLKIDVKMVNDX-XXXXXXXXXXXXTPLRSPPVSNPFAGG 119
MRQ+LKFLKIDV+M+N TPL PPVS+PF
Sbjct: 61 DLVNLVDDDDLHDVMRQQLKFLKIDVQMINQSGAKSDAGGSSGSATPLSYPPVSDPFL-- 118
Query: 120 DFGKADVFDALPEPLREXXXXXXXXXXXXXXXXXTLADSITKIGQSILNSHPQPHVATGT 179
+F KAD ALPEP+RE +ADSI+KIGQSILN Q HVA+GT
Sbjct: 119 NFVKADALQALPEPIREALYSSFSKAASSNPVLANIADSISKIGQSILNPQGQSHVASGT 178
Query: 180 GSANSVPEASATSE-KTPQPPHV 201
S N +P S T + K PQ P V
Sbjct: 179 SSKNGLPSESVTPKAKGPQSPCV 201
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 806 QQTSAADAPSSSIGIGGNNPVEEALLKELDEMGFKQVDLNKEILRNNGYNLEQAIVDLCD 865
QQTS DA SSS + N+ VEEALLKEL+ MGFKQVDLNKE+LR YNLEQ+I +LC
Sbjct: 671 QQTSTLDALSSSQSMD-NDLVEEALLKELEAMGFKQVDLNKEVLRMTDYNLEQSIDELCG 729
Query: 866 ESGWDPILEELKEMGFGXXXXXXXXXXXXXGSIMGVVMDLISKE 909
WDP+L+EL EMGF GSI VVMDL++ E
Sbjct: 730 VLDWDPLLQELHEMGFRDKETNRRLLMKNDGSIKRVVMDLLNGE 773
>Medtr4g104900.1 | PB1-Joka2 domain protein | HC |
chr4:43468606-43467241 | 20130731
Length = 175
Score = 96.7 bits (239), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/86 (54%), Positives = 58/86 (67%)
Query: 1 MESSLVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDG 60
M SSLVIKVKYG+T RR + +NN +DLNM GLR KICS+F+F A+A IL+YVDEDG
Sbjct: 1 MVSSLVIKVKYGNTFRRIGVCMDDNNHMDLNMVGLRDKICSVFNFTANANFILSYVDEDG 60
Query: 61 XXXXXXXXXXXXXXMRQKLKFLKIDV 86
M+Q+LK L+IDV
Sbjct: 61 EQVNLVDDNDLNDMMKQQLKSLRIDV 86
>Medtr4g104890.1 | PB1 domain protein | HC | chr4:43460545-43459548
| 20130731
Length = 179
Score = 88.2 bits (217), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 57/90 (63%)
Query: 1 MESSLVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDG 60
MES LVIKVK+ +T +RFN V ENNR+DL M LRAKI S F+F +A L YVDE+G
Sbjct: 25 MESQLVIKVKFENTFKRFNVSVDENNRMDLKMVELRAKIRSDFNFTDNANFSLRYVDEEG 84
Query: 61 XXXXXXXXXXXXXXMRQKLKFLKIDVKMVN 90
MRQ+LK+L+I+V+ N
Sbjct: 85 DLVNLVDDDDLHDMMRQQLKYLRIEVQYGN 114
>Medtr4g104940.1 | PB1-Joka2 domain protein | LC |
chr4:43477083-43475154 | 20130731
Length = 160
Score = 87.0 bits (214), Expect = 7e-17, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 54/87 (62%)
Query: 1 MESSLVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDG 60
M SS +KV++GD RRFN V +NN++DL+MAGLRAKI SIF F DAK L+YVDED
Sbjct: 1 MVSSFAVKVRFGDAYRRFNVSVDDNNQIDLDMAGLRAKIRSIFYFTDDAKFTLSYVDEDA 60
Query: 61 XXXXXXXXXXXXXXMRQKLKFLKIDVK 87
M Q+ KF +I V+
Sbjct: 61 EMVNLVDDNDLNDLMNQRYKFWRIYVR 87
>Medtr4g104990.1 | PB1 domain protein | LC | chr4:43494744-43493982
| 20130731
Length = 173
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 9 VKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDGXXXXXXXX 68
VKYG+T RRF+ V ENN +DLNM L+AKI SIF+F + A IL YVDE+G
Sbjct: 24 VKYGNTFRRFSVHVDENNEVDLNMVSLKAKIRSIFNF-SHANFILRYVDEEGDLVNLVDD 82
Query: 69 XXXXXXMRQKLKFLKIDVKMVND 91
M Q+L+FL+I+V M+++
Sbjct: 83 DDLHDMMSQQLEFLRIEVHMIHN 105
>Medtr4g104960.1 | PB1-Joka2 domain protein | LC |
chr4:43483640-43482379 | 20130731
Length = 167
Score = 78.2 bits (191), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 49/83 (59%)
Query: 5 LVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDGXXXX 64
L V++GD RRFN V +NN++D++M LRAKI SIFDF D K L+YVDED
Sbjct: 16 LRFHVRFGDAYRRFNVSVDDNNQIDIDMVRLRAKIRSIFDFTDDVKFTLSYVDEDSEMVN 75
Query: 65 XXXXXXXXXXMRQKLKFLKIDVK 87
MRQ+ KF +I V+
Sbjct: 76 IVDDNDLNDLMRQRFKFWRIFVR 98
>Medtr4g104980.1 | PB1 domain protein | LC | chr4:43487533-43486931
| 20130731
Length = 200
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 4 SLVI--KVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDGX 61
SLVI +VK G +RFN V ENN++DL+M LRAKI S+F+F AD L YVDE+
Sbjct: 22 SLVISVQVKCGSNFKRFNFRVDENNQMDLSMVVLRAKIRSVFNFTADTNFSLKYVDEEDD 81
Query: 62 XXXXXXXXXXXXXMRQKLKFLKIDV 86
+RQKL+ L+I+V
Sbjct: 82 TVYLVDDDDLHDVVRQKLEMLRIEV 106
>Medtr4g104950.1 | PB1 domain protein | LC |
chr4:43479102-43478689 | 20130731
Length = 137
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 40/69 (57%)
Query: 18 FNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDGXXXXXXXXXXXXXXMRQ 77
F+ V ENN+ ++NM LRAKI S F F AD L YVDE+G MRQ
Sbjct: 3 FHVRVDENNQRNINMVELRAKIRSYFIFNADVNFSLRYVDEEGDLVNLVDDDDLDDMMRQ 62
Query: 78 KLKFLKIDV 86
KL+FL+I+V
Sbjct: 63 KLEFLRIEV 71