Miyakogusa Predicted Gene

Lj4g3v1427410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1427410.1 tr|G7J4R7|G7J4R7_MEDTR Phloem specific protein
OS=Medicago truncatula GN=MTR_3g076950 PE=4
SV=1,42.48,0.00000000000002,seg,NULL,CUFF.49230.1
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g076950.1 | phloem specific protein | HC | chr3:34547442-3...    77   2e-15
Medtr3g076950.2 | phloem specific protein | HC | chr3:34547442-3...    77   3e-15
Medtr3g076960.1 | phloem specific protein | HC | chr3:34550543-3...    50   4e-07

>Medtr3g076950.1 | phloem specific protein | HC |
           chr3:34547442-34546589 | 20130731
          Length = 116

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 56/113 (49%), Gaps = 32/113 (28%)

Query: 1   MVRSQDYLTHISKVQRTPSILTDVPRYPSAHLAFRNKKVVYEQ----------------- 43
           M+RS+DYL+HIS V+R PSILTDVPRYP+A +AF NK+V+YE+                 
Sbjct: 1   MLRSEDYLSHISGVRREPSILTDVPRYPNAEMAF-NKRVIYEEDDIERSPGLHHHHHNPV 59

Query: 44  --------------TTSLXXXXXXXXXXXXDAETNQYYPMKNKQGVVELQKWK 82
                                         D ETNQ YP +N+ G +EL KWK
Sbjct: 60  IRERVEVVEYERVPEVRYGDKVIYEIEEGVDVETNQSYPRRNRPGGLELHKWK 112


>Medtr3g076950.2 | phloem specific protein | HC |
           chr3:34547442-34545420 | 20130731
          Length = 145

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 56/113 (49%), Gaps = 32/113 (28%)

Query: 1   MVRSQDYLTHISKVQRTPSILTDVPRYPSAHLAFRNKKVVYEQ----------------- 43
           M+RS+DYL+HIS V+R PSILTDVPRYP+A +AF NK+V+YE+                 
Sbjct: 1   MLRSEDYLSHISGVRREPSILTDVPRYPNAEMAF-NKRVIYEEDDIERSPGLHHHHHNPV 59

Query: 44  --------------TTSLXXXXXXXXXXXXDAETNQYYPMKNKQGVVELQKWK 82
                                         D ETNQ YP +N+ G +EL KWK
Sbjct: 60  IRERVEVVEYERVPEVRYGDKVIYEIEEGVDVETNQSYPRRNRPGGLELHKWK 112


>Medtr3g076960.1 | phloem specific protein | HC |
          chr3:34550543-34548441 | 20130731
          Length = 160

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 4/43 (9%)

Query: 1  MVRSQDYLTHISKVQRTPSILTDVPRYPSAHLAFRNKKVVYEQ 43
          M+RS DY THIS+V+R PS   D  RYP+  +AF NK+VVYE+
Sbjct: 1  MMRSNDYHTHISEVRREPS---DYSRYPNGEMAF-NKRVVYEE 39