Miyakogusa Predicted Gene

Lj4g3v1415280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1415280.1 tr|A9RCK4|A9RCK4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_64129
,27.03,0.0000000000004,no description,NULL; seg,NULL,CUFF.49221.1
         (619 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g104750.1 | hypothetical protein | HC | chr4:43395065-4340...   677   0.0  

>Medtr4g104750.1 | hypothetical protein | HC |
           chr4:43395065-43400061 | 20130731
          Length = 605

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/615 (61%), Positives = 423/615 (68%), Gaps = 24/615 (3%)

Query: 19  VAETKRKEELPPPDLTDFMNDMFFGAADMERKTYDLTGSVRGMNXXXXXXXXXXX-STRS 77
           +AET R+EE PPPDLTDFMNDMFFG  D  +KTYDLTG V GMN            STRS
Sbjct: 1   MAETLRREE-PPPDLTDFMNDMFFGTVDTHQKTYDLTGGV-GMNMDDDEEDDGFDDSTRS 58

Query: 78  NSARLTQEWLQEARRVVASSPSRCESPGRLSGSPRFAAAQSAGSPLHSLDRRDEMSRTRS 137
           NSARLTQEWLQEAR VVASSPSRCESPGRL GSPRFA+   +     S DR D +SRTRS
Sbjct: 59  NSARLTQEWLQEARLVVASSPSRCESPGRLLGSPRFASPSKSSL--PSSDRTDALSRTRS 116

Query: 138 ARRYRAVEGVSDEILSKTTKHSRNKSETFAERSPEGDGSPATAVHKWFSNILKXXXXXXX 197
           ARRYR  EG+SDEILSKT KH+RNKS+TFA+ S +GDGSPATAVHKWFSNILK       
Sbjct: 117 ARRYRTAEGISDEILSKTAKHTRNKSDTFAQPSSDGDGSPATAVHKWFSNILKPNNNNNN 176

Query: 198 XXXXXXXXXXXXXXXXXXXXRQPFSRKSRFQSEPPAAASPHKLGIPAPVSRRTFKSSVPL 257
                               RQP  RKSRFQS P  A  P  +  P   SRRTFK S   
Sbjct: 177 NNNNSPSNTPPPSPDSLPP-RQPHPRKSRFQSSPSPAPQPQGIQAPNYNSRRTFKPSALS 235

Query: 258 SPTAENANR-----PGSLPLSPPRNLVESAHRRTLSSSTCSREKIAPTRH-VGKGEEVTR 311
            P  EN +R       SLPLSPPRNLVESAHRRT+SSSTCS EKIAP ++ V + EE T 
Sbjct: 236 EPLPENTSRRTPHSEDSLPLSPPRNLVESAHRRTISSSTCSWEKIAPVKNFVKEEEETTE 295

Query: 312 EQSLNGFLKEQRSLLQKISNRELRAHA--KIVLSGTSNSTASMVAAICHAWLLAYRQREN 369
           E SLNGFLKEQR+L Q+ S  EL  +   KIVLSG  NSTASMVAAICHAWLL YRQ+EN
Sbjct: 296 EYSLNGFLKEQRNLFQRFSKGELHTNVEIKIVLSGHLNSTASMVAAICHAWLLGYRQKEN 355

Query: 370 DXXXXXXXXXXXXXXXXXXXSMLKLRQAAWLFHHAGVDATALLFSDEVDMESLLVTGQLS 429
           D                    M KL+QAAWLFHHAG+DAT+LLF+DEVDMESLLVTG+LS
Sbjct: 356 DGGGKERTVVVPVMNVKRS-DMCKLKQAAWLFHHAGLDATSLLFTDEVDMESLLVTGKLS 414

Query: 430 VLVVGQDVLSTTSEVGSQCTILTDNYCEDAYXXXXXXXXXXXXXXXXXXDTQNLRASATI 489
           VL+VGQDVLS T+EVGSQCT+LTDNYCEDAY                  DTQNL+ASA +
Sbjct: 415 VLMVGQDVLSATNEVGSQCTVLTDNYCEDAYDLLQNSVLKKLLLAGILLDTQNLKASAAV 474

Query: 490 SMTRDAEAVQLLLVGSPPNYRYALYDQLMQDQKGTSFVEALNHNYGRPHEESDQNSEG-- 547
           SMTRDAEAVQLLLVG  PNYRYAL+DQLMQDQ+ +SFVEALNHNY +  +ESDQNSEG  
Sbjct: 475 SMTRDAEAVQLLLVGLAPNYRYALFDQLMQDQQSSSFVEALNHNYWKIPDESDQNSEGNM 534

Query: 548 QHK---RRSSSTSERDIIMSSSKTSSIDTKVKLITXXXXXXXXXXXXXXXXXXERENSRG 604
           +HK   R+SSSTS+R+   +SSKT+S D KVKL T                  E+E SRG
Sbjct: 535 EHKVRDRKSSSTSDRETTNASSKTNSTDAKVKLAT----PILQSPSPGVSSNAEKEASRG 590

Query: 605 KNTFFLARWFGFGSK 619
           KN FFLARWFGFGSK
Sbjct: 591 KNKFFLARWFGFGSK 605