Miyakogusa Predicted Gene
- Lj4g3v1411040.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1411040.1 tr|A6N0D0|A6N0D0_ORYSI Chloroplast 28 kDa
ribonucleoprotein (Fragment) OS=Oryza sativa subsp.
indica,49.44,0.000000000000001,RNA-binding domain, RBD,NULL; seg,NULL;
RNA recognition motif,RNA recognition motif domain;
RRM_1,RN,CUFF.49212.1
(307 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 302 3e-82
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 268 5e-72
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 244 6e-65
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 161 7e-40
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 161 7e-40
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 155 4e-38
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 124 8e-29
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 124 8e-29
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 123 2e-28
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 115 4e-26
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 96 4e-20
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 96 4e-20
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 92 4e-19
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 89 5e-18
Medtr4g104450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 87 2e-17
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 3e-17
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 3e-17
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 2e-16
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 83 3e-16
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 5e-16
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 8e-16
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 8e-16
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 81 1e-15
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 1e-15
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 81 2e-15
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 80 4e-15
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 4e-15
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 79 5e-15
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 79 5e-15
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 7e-15
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 7e-15
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 78 1e-14
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 78 1e-14
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 77 2e-14
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 77 3e-14
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 77 3e-14
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 76 3e-14
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 76 3e-14
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 76 4e-14
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 76 5e-14
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 1e-13
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 1e-13
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 1e-13
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 2e-13
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 2e-13
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 2e-13
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 73 4e-13
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 73 4e-13
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 73 4e-13
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 72 5e-13
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 6e-13
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 72 7e-13
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 7e-13
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 9e-13
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 71 1e-12
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 71 2e-12
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 70 2e-12
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 70 2e-12
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 70 3e-12
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 69 4e-12
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 5e-12
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 5e-12
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 5e-12
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 6e-12
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 69 6e-12
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 69 7e-12
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 68 1e-11
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 68 1e-11
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 68 1e-11
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 67 2e-11
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 67 3e-11
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 66 4e-11
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 66 4e-11
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 65 9e-11
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 1e-10
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 1e-10
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 1e-10
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 64 2e-10
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 2e-10
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 63 3e-10
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 61 1e-09
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 61 2e-09
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 60 3e-09
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 60 3e-09
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 59 5e-09
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 59 5e-09
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 59 5e-09
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 59 5e-09
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 59 5e-09
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 7e-09
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 8e-09
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 9e-09
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 58 1e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 3e-08
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 6e-08
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 4e-07
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 5e-07
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 9e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 51 1e-06
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 51 1e-06
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 51 1e-06
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 51 1e-06
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 51 1e-06
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC... 50 2e-06
Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC... 50 3e-06
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-06
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-06
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-06
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 50 3e-06
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 50 3e-06
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 5e-06
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 5e-06
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 49 8e-06
Medtr1g048080.1 | pentatricopeptide (PPR) repeat protein | HC | ... 49 9e-06
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 168/305 (55%), Positives = 204/305 (66%), Gaps = 15/305 (4%)
Query: 1 MSITTMPAFKFLTVAESCLLSQPSLFSSKTRYPILSNSLKTLKLQXXXXXXXXXXXXXXX 60
MSIT+ FK LT+AESCLLSQPSLF +K++ P +SNS K K+Q
Sbjct: 1 MSITS---FKSLTMAESCLLSQPSLFYTKSKSPFISNSAKPFKVQNPSYNSSKFSSSVSL 57
Query: 61 T----THRSPLLTFVAQTSDXXXXXXXXXXXX-XXXXXPTWANEDSDETEGGEEVVASAE 115
T S L+TFVAQTSD TW E EV + E
Sbjct: 58 VSKRRTRHSSLVTFVAQTSDWAQQEEKEDGATWENQADATWVGETESNENEEVEVASFEE 117
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
PSEDLKIFVGNLP+DV+SE LA LFE++G+VE AEVIYN+ T++SRGFGFV MST+E++E
Sbjct: 118 PSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVE 177
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
+A+NKFSG+ELDGR+LTVNKA P+ R PRTF YVGNLPW VD +
Sbjct: 178 RAVNKFSGFELDGRLLTVNKAAPRGTPRLRQPRTF-------NSGLRAYVGNLPWDVDNS 230
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
LE++F EHG VE+A++V DRETGRSRGFGFVTMS+EA++N AIAALDGQS +GR IRV+
Sbjct: 231 SLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVN 290
Query: 296 VAEGR 300
VAE R
Sbjct: 291 VAEER 295
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 6/91 (6%)
Query: 120 LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALN 179
L+ +VGNLPWDV++ +L LF E G VE A+V+Y++ T +SRGFGFV MS ++ A+
Sbjct: 216 LRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIA 275
Query: 180 KFSGYELDGRVLTVNKATPKEARPERPPRTF 210
G +GR + VN A ERP R+F
Sbjct: 276 ALDGQSFNGRAIRVNVAE------ERPRRSF 300
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VGNLP+ VD+ +L ++F + G VE A ++ +R+T RSRGFGFVTMS+ ++ A+
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKF 183
Query: 283 DGQSLDGRTIRVSVAEGRSGGR 304
G LDGR + V+ A R R
Sbjct: 184 SGFELDGRLLTVNKAAPRGTPR 205
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 268 bits (685), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 160/312 (51%), Positives = 193/312 (61%), Gaps = 39/312 (12%)
Query: 1 MSIT-TMPAFKFLTVAESCLLS-----QPSLFSSKTRYPILSNSLKTLKLQXXXXXXXXX 54
MSIT T P FK LT+AESCLLS +P+ FS ++ L SLKT +
Sbjct: 1 MSITSTTPLFKSLTMAESCLLSSQSKSKPTFFSLPSKSLNLHLSLKTNR----------- 49
Query: 55 XXXXXXTTHRSPLLTFVAQTSDXXXXXXXXXXXXXXXXXPTWANEDSDETEGGEEVVASA 114
+ SP FVAQ D PT D+ ETE G + A
Sbjct: 50 ------SISISPSPLFVAQEGDTLTTSLDEEAGLSLDWEPT---ADAAETETGADDSAEG 100
Query: 115 ---EPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTA 171
EP ED K+FVGN P+DV+SE LAMLF +AG+VE AEVIYN+ T+ SRGFGFV MST
Sbjct: 101 YFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTV 160
Query: 172 EDLEKALNKFSGYELDGRVLTVNKATPKEARP---ERPPRTFXXXXXXXXXXXXVYVGNL 228
E+ E A+ KF+GY+ +GR L VNKA+PK +RP ER PRTF +YV NL
Sbjct: 161 EEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTF-------EPVLRIYVANL 213
Query: 229 PWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLD 288
W VD +RLE++F EHG + +AR+V DRETGRSRGFGFVTMS E ++N AIAALDGQSL+
Sbjct: 214 AWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLE 273
Query: 289 GRTIRVSVAEGR 300
GRTIRVSVAE R
Sbjct: 274 GRTIRVSVAEDR 285
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 120 LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALN 179
L+I+V NL W+V++ L +F E G + A V+Y++ T +SRGFGFV MS ++ A+
Sbjct: 206 LRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIA 265
Query: 180 KFSGYELDGRVLTVNKATPKEARPER 205
G L+GR + V+ A E RP R
Sbjct: 266 ALDGQSLEGRTIRVSVA---EDRPRR 288
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 244 bits (624), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 147/297 (49%), Positives = 179/297 (60%), Gaps = 39/297 (13%)
Query: 1 MSIT-TMPAFKFLTVAESCLLS-----QPSLFSSKTRYPILSNSLKTLKLQXXXXXXXXX 54
MSIT T P FK LT+AESCLLS +P+ FS ++ L SLKT +
Sbjct: 1 MSITSTTPLFKSLTMAESCLLSSQSKSKPTFFSLPSKSLNLHLSLKTNR----------- 49
Query: 55 XXXXXXTTHRSPLLTFVAQTSDXXXXXXXXXXXXXXXXXPTWANEDSDETEGGEEVVASA 114
+ SP FVAQ D PT D+ ETE G + A
Sbjct: 50 ------SISISPSPLFVAQEGDTLTTSLDEEAGLSLDWEPT---ADAAETETGADDSAEG 100
Query: 115 ---EPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTA 171
EP ED K+FVGN P+DV+SE LAMLF +AG+VE AEVIYN+ T+ SRGFGFV MST
Sbjct: 101 YFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTV 160
Query: 172 EDLEKALNKFSGYELDGRVLTVNKATPKEARP---ERPPRTFXXXXXXXXXXXXVYVGNL 228
E+ E A+ KF+GY+ +GR L VNKA+PK +RP ER PRTF +YV NL
Sbjct: 161 EEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTF-------EPVLRIYVANL 213
Query: 229 PWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ 285
W VD +RLE++F EHG + +AR+V DRETGRSRGFGFVTMS E ++N AIAALDGQ
Sbjct: 214 AWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQ 270
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VGN P+ VD+ +L +F + G VE A ++ +R+T SRGFGFVTMS+ + A+
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 283 DGQSLDGRTIRVSVA 297
+G +GR++ V+ A
Sbjct: 171 NGYDYNGRSLVVNKA 185
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 119/200 (59%), Gaps = 21/200 (10%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S + ++FVGNLP+ V+S LA +FE AG VE EVIY+K+T +SRGFGFV MS+A ++E
Sbjct: 81 SPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEA 140
Query: 177 ALNKFSGYELDGRVLTVNKATPKEA----------------RPERPPRTFXXXXXXXXXX 220
A + +GY +DGR L VN P RP PPR
Sbjct: 141 AAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPR-----GGSSDGD 195
Query: 221 XXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
V+VGNL W VD LE +F E G V A+++ DRE+GRSRGFGFVT SS +++ AI
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 281 ALDGQSLDGRTIRVSVAEGR 300
LDG L+GR IRVS A+ R
Sbjct: 256 TLDGADLNGRAIRVSPADSR 275
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
D ++ VGNL W V++ L LF E G V A+VIY++ + +SRGFGFV S+A++++ A+
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 179 NKFSGYELDGRVLTVNKATPKEARPER 205
G +L+GR + V +P ++RP+R
Sbjct: 255 RTLDGADLNGRAIRV---SPADSRPKR 278
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 119/200 (59%), Gaps = 21/200 (10%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S + ++FVGNLP+ V+S LA +FE AG VE EVIY+K+T +SRGFGFV MS+A ++E
Sbjct: 81 SPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEA 140
Query: 177 ALNKFSGYELDGRVLTVNKATPKEA----------------RPERPPRTFXXXXXXXXXX 220
A + +GY +DGR L VN P RP PPR
Sbjct: 141 AAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPR-----GGSSDGD 195
Query: 221 XXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
V+VGNL W VD LE +F E G V A+++ DRE+GRSRGFGFVT SS +++ AI
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 281 ALDGQSLDGRTIRVSVAEGR 300
LDG L+GR IRVS A+ R
Sbjct: 256 TLDGADLNGRAIRVSPADSR 275
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
D ++ VGNL W V++ L LF E G V A+VIY++ + +SRGFGFV S+A++++ A+
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 179 NKFSGYELDGRVLTVNKATPKEARPER 205
G +L+GR + V +P ++RP+R
Sbjct: 255 RTLDGADLNGRAIRV---SPADSRPKR 278
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 118/196 (60%), Gaps = 15/196 (7%)
Query: 106 GGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGF 165
GGE V AE K++ GNLP+ V+S LA L EE GS E EV+Y++ T +SRGF F
Sbjct: 102 GGETV---AEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAF 158
Query: 166 VIMSTAEDLEKALNKFSGYELDGRVLTVNKA-TPKEARPERPPRTFXXXXXXXXXXXXVY 224
V MS ED + G E GR L VN + PK P P + ++
Sbjct: 159 VTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYK-----------LF 207
Query: 225 VGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
VGNL W+V + L + F+EHG V AR++ D ETG+SRG+GFV+ +++++++ A+A +D
Sbjct: 208 VGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDN 267
Query: 285 QSLDGRTIRVSVAEGR 300
L+GRT+RVS+A+G+
Sbjct: 268 VELEGRTLRVSLAQGK 283
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P + K+FVGNL W V SE+L F+E G+V A V+++ T +SRG+GFV +T +++
Sbjct: 200 PETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMD 259
Query: 176 KALNKFSGYELDGRVLTVNKATPKEA 201
AL EL+GR L V+ A K +
Sbjct: 260 TALAIMDNVELEGRTLRVSLAQGKRS 285
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 4/185 (2%)
Query: 114 AEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAED 173
AE ++ ++FVGNLP+ + S LA LF EAG+V E++Y+ TN+SRGF FV M ED
Sbjct: 102 AESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVED 161
Query: 174 LEKALNKFSGYELDGRVLTVN-KATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSV 232
E+A+ F G + GR + VN P + + T+ +Y GNL W +
Sbjct: 162 AEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTY---RGYVDSPHKIYAGNLGWDM 218
Query: 233 DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTI 292
+ L + F + + +A++V +R G+SRG+GFV+ + D+ A++A++G + GR +
Sbjct: 219 TSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPL 278
Query: 293 RVSVA 297
R+ +A
Sbjct: 279 RLKLA 283
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VGNLP+S+ +++L ++F E GNV + I+ D T RSRGF FVTM + D AI
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 283 DGQSLDGRTIRVSVAE 298
DG ++ GR I+V+ E
Sbjct: 170 DGTTVGGRAIKVNFPE 185
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 4/185 (2%)
Query: 114 AEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAED 173
AE ++ ++FVGNLP+ + S LA LF EAG+V E++Y+ TN+SRGF FV M ED
Sbjct: 102 AESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVED 161
Query: 174 LEKALNKFSGYELDGRVLTVN-KATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSV 232
E+A+ F G + GR + VN P + + T+ +Y GNL W +
Sbjct: 162 AEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTY---RGYVDSPHKIYAGNLGWDM 218
Query: 233 DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTI 292
+ L + F + + +A++V +R G+SRG+GFV+ + D+ A++A++G + GR +
Sbjct: 219 TSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPL 278
Query: 293 RVSVA 297
R+ +A
Sbjct: 279 RLKLA 283
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VGNLP+S+ +++L ++F E GNV + I+ D T RSRGF FVTM + D AI
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 283 DGQSLDGRTIRVSVAE 298
DG ++ GR I+V+ E
Sbjct: 170 DGTTVGGRAIKVNFPE 185
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 117/206 (56%), Gaps = 5/206 (2%)
Query: 99 EDSDETEGGEEVVASAEPSEDL-KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKAT 157
E SD+ + EE + S+D +++VGNLP+ + S LA +F EAG+V E++Y++ T
Sbjct: 89 ETSDKPKQDEEQKVTT--SDDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLT 146
Query: 158 NQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVN-KATPKEA-RPERPPRTFXXXXX 215
++SRGF FV M +AE+ ++A+ F G ++ GR VN PK R +
Sbjct: 147 DRSRGFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRG 206
Query: 216 XXXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADI 275
+Y GNL W +++ L + F E + A+I+ +R+ GRSRGFGFVT + +
Sbjct: 207 FVDSPHKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHL 266
Query: 276 NGAIAALDGQSLDGRTIRVSVAEGRS 301
A+ A++G + GR +R+++A R+
Sbjct: 267 EAALNAMNGVEVQGRPLRLNLAAART 292
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNLP+S+ +++L +IF E G V + IV DR T RSRGF FVTM S + AI
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 283 DGQSLDGRTIRVSVAEGRSGG 303
DG + GR+ +V+ E GG
Sbjct: 171 DGSQVGGRSAKVNFPEVPKGG 191
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Query: 110 VVASAEPSED----LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGF 165
VV+S + + D K++VGN+P V ++ L + +E G+VE AEV+Y+K + +SR F F
Sbjct: 46 VVSSEQATVDSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAF 105
Query: 166 VIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYV 225
V M T ED A K +G E+ GR + VN T K E P VYV
Sbjct: 106 VTMKTVEDANAAAEKLNGTEIGGREIKVN-ITEKPLTTEGLP-VQAGESTFVDSPYKVYV 163
Query: 226 GNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ 285
GNL +V + L++ F E GN +A++ T +S GFGFVT SS+ D+ AI++ +
Sbjct: 164 GNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 223
Query: 286 SLDGRTIRVSVA 297
L+G+ IRV+ A
Sbjct: 224 LLEGQKIRVNKA 235
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGN+P +V LE+I +EHG VE A ++ D+ + RSR F FVTM + D N A L
Sbjct: 62 LYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKL 121
Query: 283 DGQSLDGRTIRVSVAE 298
+G + GR I+V++ E
Sbjct: 122 NGTEIGGREIKVNITE 137
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 22/198 (11%)
Query: 107 GEEVVASAEPSEDL---KIFVGNLPWDVESENLAMLFEEAGSVEFAEV-IYNKATNQSRG 162
E+ V + E +E+L ++ N+PW +E++ LFE+ G V E+ +YNK N++RG
Sbjct: 73 SEQQVTTQEQTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK--NRNRG 130
Query: 163 FGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARP----ERPPRTFXXXXXXXX 218
FV M + E+ +ALN YE DGR++ + A PK+ + ER P T+
Sbjct: 131 LAFVEMGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITY-------- 182
Query: 219 XXXXVYVGNLPWSVDTARLEEIFRE-HGNVENARIVMDRETGRSRGFGFVTMSSEADING 277
++V N P+ + ++E F G V +A ++ R G+GFV+ S+ + +
Sbjct: 183 ---NLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADE 239
Query: 278 AIAALDGQSLDGRTIRVS 295
A+A G++ GR +RV+
Sbjct: 240 ALAEFQGKNFMGRPLRVA 257
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 22/198 (11%)
Query: 107 GEEVVASAEPSEDL---KIFVGNLPWDVESENLAMLFEEAGSVEFAEV-IYNKATNQSRG 162
E+ V + E +E+L ++ N+PW +E++ LFE+ G V E+ +YNK N++RG
Sbjct: 73 SEQQVTTQEQTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK--NRNRG 130
Query: 163 FGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARP----ERPPRTFXXXXXXXX 218
FV M + E+ +ALN YE DGR++ + A PK+ + ER P T+
Sbjct: 131 LAFVEMGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITY-------- 182
Query: 219 XXXXVYVGNLPWSVDTARLEEIFRE-HGNVENARIVMDRETGRSRGFGFVTMSSEADING 277
++V N P+ + ++E F G V +A ++ R G+GFV+ S+ + +
Sbjct: 183 ---NLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADE 239
Query: 278 AIAALDGQSLDGRTIRVS 295
A+A G++ GR +RV+
Sbjct: 240 ALAEFQGKNFMGRPLRVA 257
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 113 SAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAE 172
SAE ++D +VGNL + E L LF +AG V V ++ TNQ +G+GFV + E
Sbjct: 18 SAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEE 77
Query: 173 DLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSV 232
D + A+ + +L G+ + VNKA+ +++GNL V
Sbjct: 78 DADYAIKVLNMIKLYGKPIRVNKAS--------------QDKKSLDVGANLFIGNLDPDV 123
Query: 233 DTARLEEIFREHGN-VENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRT 291
D L + F G V N +I+ D +TG SRGFGF++ S + AI A++GQ L R
Sbjct: 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQ 183
Query: 292 IRVSVA 297
I VS A
Sbjct: 184 ITVSYA 189
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 17/181 (9%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++G+L + V+ L F G V ++I NK T Q G+GF+ + E+ L +
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 182 SGYELDG--RVLTVNKAT--PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+G ++ G + +N A+ E RP+ P ++VG+L V L
Sbjct: 77 NGTQMPGTEQTFRLNWASFGIGERRPDAGP------------DHSIFVGDLAPDVTDYLL 124
Query: 238 EEIFREH-GNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
+E FR H G+V A++V D TGRS+G+GFV S E++ N A++ ++G R +R+S
Sbjct: 125 QETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISA 184
Query: 297 A 297
A
Sbjct: 185 A 185
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 35/204 (17%)
Query: 119 DLKIFVGNLPWDVESENLAMLFE-EAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
D IFVG+L DV L F GSV A+V+ + T +S+G+GFV S + +A
Sbjct: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
Query: 178 LNKFSGYELDGRVLTVNKATPKE--------------------------ARPERPPRTFX 211
+++ +G R + ++ ATPK+ A P T
Sbjct: 167 MSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTV- 225
Query: 212 XXXXXXXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSS 271
+YVGNL +V L++ F + G + + ++ + GFV +
Sbjct: 226 -PPEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKV------HPGKACGFVQFGA 278
Query: 272 EADINGAIAALDGQSLDGRTIRVS 295
A AI + G+ L + IRVS
Sbjct: 279 RASAEEAIQKMQGKILGQQVIRVS 302
>Medtr4g104450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr4:43219118-43218715 | 20130731
Length = 104
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 6/108 (5%)
Query: 163 FGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXX 222
FG V MST E++EKA+ KF+GYEL G LTV+K + P+ P R
Sbjct: 2 FGCVTMSTVEEVEKAMKKFNGYELAGNFLTVSKDDIRNTLPDLPKRP-----HAFDSPFS 56
Query: 223 VYVGNLPWSV-DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTM 269
VYV L S+ + LE++F +HG VE A ++ D+ + RSRG+GFVTM
Sbjct: 57 VYVTKLSRSIENNEHLEQLFSKHGKVECAELICDKVSSRSRGYGFVTM 104
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 55/76 (72%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+VG L W+ D LE+ F ++G + +++I+ DRETGRSRGFGFVT ++E +N AI A+
Sbjct: 8 CFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAM 67
Query: 283 DGQSLDGRTIRVSVAE 298
+GQ LDGR I V+ A+
Sbjct: 68 NGQDLDGRNITVNQAQ 83
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
+ + FVG L W ++E L F + G + +++I ++ T +SRGFGFV + + + A+
Sbjct: 5 EYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAI 64
Query: 179 NKFSGYELDGRVLTVNKA 196
+G +LDGR +TVN+A
Sbjct: 65 EAMNGQDLDGRNITVNQA 82
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 55/76 (72%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+VG L W+ D LE+ F ++G + +++I+ DRETGRSRGFGFVT ++E +N AI A+
Sbjct: 8 CFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAM 67
Query: 283 DGQSLDGRTIRVSVAE 298
+GQ LDGR I V+ A+
Sbjct: 68 NGQDLDGRNITVNQAQ 83
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
+ + FVG L W ++E L F + G + +++I ++ T +SRGFGFV + + + A+
Sbjct: 5 EYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAI 64
Query: 179 NKFSGYELDGRVLTVNKA 196
+G +LDGR +TVN+A
Sbjct: 65 EAMNGQDLDGRNITVNQA 82
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVG + +S D A L E F +G+V +AR+++DRE GRS+GFGFVT ++ + + A+ A+
Sbjct: 42 LYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQAM 101
Query: 283 DGQSLDGRTIRVSVAEGR 300
D Q L GRT+RV+ A+ R
Sbjct: 102 DNQELHGRTVRVNYAQER 119
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K++VG + + + L F G V A VI ++ +S+GFGFV +T+E+ AL
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 181 FSGYELDGRVLTVNKATPKEARPERP 206
EL GR + VN A ERP
Sbjct: 101 MDNQELHGRTVRVNYA------QERP 120
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 54/78 (69%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + +S D L E F +G V +ARI+MDRETGRSRGFGF+T +S + + AI AL
Sbjct: 44 LFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 103
Query: 283 DGQSLDGRTIRVSVAEGR 300
DGQ L GR +RV+ A R
Sbjct: 104 DGQDLHGRRVRVNYANER 121
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + + + +L F G V A +I ++ T +SRGFGF+ ++ E+ A+
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 181 FSGYELDGRVLTVNKATPKEARPERP 206
G +L GR + VN A ERP
Sbjct: 103 LDGQDLHGRRVRVNYAN------ERP 122
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 7/178 (3%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+ V NLPW + ++ LF + G+V E+I +K + +G+ FV M + E + A++KF
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSK-DGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+ E+ GR+L V + A+ + PR +Y NL W + L +IF
Sbjct: 157 NATEISGRILRV-----EFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIF 211
Query: 242 REHGNVE-NARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
E+ +AR+V G+S G+GFV+ +E + AI+AL G+ L GR + V ++E
Sbjct: 212 TENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISE 269
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 225 VGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
V NLPWS+ ++++F + G V + I+ ++ G+ +G+ FVTM S A+ +
Sbjct: 100 VFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKFNA 158
Query: 285 QSLDGRTIRVSVAEG 299
+ GR +RV A+G
Sbjct: 159 TEISGRILRVEFAKG 173
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + +S D L E F +G+V +A+I+MDR+TGRSRGFGF+T ++ + + A+ A+
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 283 DGQSLDGRTIRVSVAEGRS 301
D + LDGRT+RV+ A R+
Sbjct: 102 DNKELDGRTVRVNYATERA 120
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + + + L F G V A++I ++ T +SRGFGF+ +T+E+ AL
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
ELDGR + VN AT + ARP
Sbjct: 101 MDNKELDGRTVRVNYATER-ARP 122
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + +S D L E F +G+V +A+I+MDR+TGRSRGFGF+T ++ + + A+ A+
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 283 DGQSLDGRTIRVSVAEGRS 301
D + LDGRT+RV+ A R+
Sbjct: 102 DNKELDGRTVRVNYATERA 120
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + + + L F G V A++I ++ T +SRGFGF+ +T+E+ AL
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
ELDGR + VN AT + ARP
Sbjct: 101 MDNKELDGRTVRVNYATER-ARP 122
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 8/185 (4%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P E I++G+L ++ L F G V A+VI NK T QS G+GFV T E
Sbjct: 112 PEEIRTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAE 171
Query: 176 KALNKFSGYELDG--RVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVD 233
K L F+G + + +N AT A R+ V+VG+L V
Sbjct: 172 KVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRS-----SEATSDLSVFVGDLAIDVT 226
Query: 234 TARLEEIF-REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTI 292
A L+E F + +++ A++V+D TGRS+G+GFV E++ A+ ++G R +
Sbjct: 227 DAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPM 286
Query: 293 RVSVA 297
RV VA
Sbjct: 287 RVGVA 291
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 33/219 (15%)
Query: 106 GGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLF-EEAGSVEFAEVIYNKATNQSRGFG 164
GGE S+E + DL +FVG+L DV L F + S++ A+V+ + T +S+G+G
Sbjct: 202 GGER--RSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYG 259
Query: 165 FVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXX--------- 215
FV + +A+ + +G R + V ATPK+ P+ +
Sbjct: 260 FVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGN--PQQYSSQAVVLAGGGGHS 317
Query: 216 -----------XXXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGF 264
++VG L + L + F + G+V + +I + +G
Sbjct: 318 NGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPV------GKGC 371
Query: 265 GFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRSGG 303
GFV ++ + AI L+G + +T+R+S GRS G
Sbjct: 372 GFVQLADRKNAEEAIQGLNGTVIGKQTVRLSW--GRSPG 408
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+VG L W+ D+ LE+ F ++G + +++I+ DRETGRSRGFGFVT + E + AI +
Sbjct: 10 CFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGM 69
Query: 283 DGQSLDGRTIRVSVAE 298
+GQ +DGR I V+ A+
Sbjct: 70 NGQDMDGRNITVNEAQ 85
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 111 VASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMST 170
+ASA+ + + FVG L W +SE L F + G + +++I ++ T +SRGFGFV +
Sbjct: 1 MASADV--EYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFAD 58
Query: 171 AEDLEKALNKFSGYELDGRVLTVNKA 196
+ + A+ +G ++DGR +TVN+A
Sbjct: 59 EKSMRDAIEGMNGQDMDGRNITVNEA 84
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 17/187 (9%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++G+L + ++ L F G V +VI NK TNQS G+GF+ + E+ L F
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 182 SGYEL--DGRVLTVNKAT--PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+G + G+ +N AT E R + P ++VG+L V L
Sbjct: 136 NGTIMPNGGQNFRLNWATFSSGEKRHDDSP------------DYTIFVGDLAADVSDHHL 183
Query: 238 EEIFR-EHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
E+FR + +V+ A++V+DR TGR++G+GFV + E++ A+ + G R +R+
Sbjct: 184 TEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGP 243
Query: 297 AEGRSGG 303
A ++ G
Sbjct: 244 ASNKNLG 250
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFE-EAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
S D IFVG+L DV +L +F SV+ A+V+ ++ T +++G+GFV + +
Sbjct: 164 SPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQM 223
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXX-----XXXVYVGNLPW 230
+A+ + G R + + A+ K + ++ ++VGNL
Sbjct: 224 RAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDP 283
Query: 231 SVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGR 290
+V L+++F ++G + + +I + GFV + + A+ L+G L G+
Sbjct: 284 NVTDEHLKQVFTQYGELVHVKIPSGKRC------GFVQFADRSSAEEALRVLNGTLLGGQ 337
Query: 291 TIRVSVAEGRS 301
+R+S GRS
Sbjct: 338 NVRLSW--GRS 346
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 51/76 (67%)
Query: 225 VGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
V + +S D L E F +G V +ARI+MDRETGRSRGFGF+T +S + + AI ALDG
Sbjct: 54 VAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDG 113
Query: 285 QSLDGRTIRVSVAEGR 300
Q L GR +RV+ A R
Sbjct: 114 QDLHGRRVRVNYANER 129
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 120 LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALN 179
L + V + + + +L F G V A +I ++ T +SRGFGF+ ++ E+ A+
Sbjct: 50 LHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 109
Query: 180 KFSGYELDGRVLTVNKATPKEARPERP 206
G +L GR + VN A ERP
Sbjct: 110 ALDGQDLHGRRVRVNYAN------ERP 130
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G L ++VD L + F +G+V AR++ DRETGRSRGFGFV +SE A+ ++
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SM 96
Query: 283 DGQSLDGRTIRVSVAEGR 300
DGQ L+GR IRVS A R
Sbjct: 97 DGQDLNGRNIRVSYANDR 114
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G L ++V+ ++L F G V A VI ++ T +SRGFGFV ++ E AL+
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 95
Query: 181 FSGYELDGRVLTVNKATPKEA 201
G +L+GR + V+ A ++A
Sbjct: 96 MDGQDLNGRNIRVSYANDRQA 116
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + WD + E L F G V A ++ ++AT ++RGFGFV+ S E+ +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-- 64
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXX-XXXXXXXVYVGNLPWSVDTARLEE 239
+ +DGR + KA P++ + +T ++VG LP ++ + +
Sbjct: 65 IDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKM 124
Query: 240 IFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
F + G + + ++ D T R RGFGF+T SE
Sbjct: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 110 VVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMS 169
V S P KIFVG LP + + M F++ G++ V+Y+ T + RGFGF+
Sbjct: 96 VQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
Query: 170 TAEDLEKALNKFSGYELDGRVLTVNKATPKEARP 203
+ E +++ L K + +EL+G+++ V +A PKE P
Sbjct: 156 SEEAVDRVLYK-TFHELNGKMVEVKRAVPKELSP 188
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W D RL+E F +G V A I+ DR TGR+RGFGFV S A I +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI--I 65
Query: 283 DGQSLDGRTIRVSVA 297
D +DGRT+ A
Sbjct: 66 DKHIIDGRTVEAKKA 80
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + WD + E L F G V A ++ ++AT ++RGFGFV+ S E+ +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-- 64
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXX-XXXXXXXVYVGNLPWSVDTARLEE 239
+ +DGR + KA P++ + +T ++VG LP ++ + +
Sbjct: 65 IDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKM 124
Query: 240 IFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
F + G + + ++ D T R RGFGF+T SE
Sbjct: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 110 VVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMS 169
V S P KIFVG LP + + M F++ G++ V+Y+ T + RGFGF+
Sbjct: 96 VQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
Query: 170 TAEDLEKALNKFSGYELDGRVLTVNKATPKEARP 203
+ E +++ L K + +EL+G+++ V +A PKE P
Sbjct: 156 SEEAVDRVLYK-TFHELNGKMVEVKRAVPKELSP 188
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W D RL+E F +G V A I+ DR TGR+RGFGFV S A I +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI--I 65
Query: 283 DGQSLDGRTIRVSVA 297
D +DGRT+ A
Sbjct: 66 DKHIIDGRTVEAKKA 80
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 52/76 (68%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+VG L W+ D+ LE+ F + G + +++++ DRETGRSRGFGFVT + E + AI +
Sbjct: 10 CFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEM 69
Query: 283 DGQSLDGRTIRVSVAE 298
+GQ +DGR I V+ A+
Sbjct: 70 NGQDIDGRNITVNEAQ 85
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
+ + FVG L W +S+ L F + G + ++VI ++ T +SRGFGFV + + + A+
Sbjct: 7 EYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAI 66
Query: 179 NKFSGYELDGRVLTVNKA 196
+ +G ++DGR +TVN+A
Sbjct: 67 EEMNGQDIDGRNITVNEA 84
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIF+G L D E FE G + + ++ ++ T + RGFGF+ + A +++ + +
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+ ++ + + + + PK A +T ++VG +P +V L+
Sbjct: 79 --NHIINDKQVEIKRTIPKGASQTNDFKT-----------KKIFVGGIPATVSEDELKIF 125
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
F +HGNV I+ D T RSRGFGFV S+ ++ +A + +D + + AE
Sbjct: 126 FSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAE 183
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S+ K+F+G + WD E L F G V V+ K T + RGFGFV+ S L++
Sbjct: 3 SDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDR 62
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARP-------ERPPRTFXXXXXXXXXXXXVYVGNLP 229
L + +DGR + +A +E + ++VG LP
Sbjct: 63 VLEDK--HVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 230 WSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
++ + + F +G+V + ++ D+ TGR RGFGF+T +E
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTE 163
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP + E FE G V V+Y++ T + RGFGF+ T E +++ L+K
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
+ ++L+G+ + V +A PK+A P
Sbjct: 173 -TFHDLNGKQVEVKRALPKDANP 194
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S+ K+F+G + WD E L F G V V+ K T + RGFGFV+ S L++
Sbjct: 3 SDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDR 62
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARP-------ERPPRTFXXXXXXXXXXXXVYVGNLP 229
L + +DGR + +A +E + ++VG LP
Sbjct: 63 VLEDK--HVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 230 WSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
++ + + F +G+V + ++ D+ TGR RGFGF+T +E
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTE 163
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP + E FE G V V+Y++ T + RGFGF+ T E +++ L+K
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
+ ++L+G+ + V +A PK+A P
Sbjct: 173 -TFHDLNGKQVEVKRALPKDANP 194
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 11/191 (5%)
Query: 114 AEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAED 173
A E +++G+L + ++ L F G + +VI NK T+QS G+GF+ +T
Sbjct: 54 ASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRAT 113
Query: 174 LEKALNKFSGYEL--DGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWS 231
E+ L ++G + G+ +N AT ER R ++VG+L
Sbjct: 114 AERVLQTYNGTIMPNGGQNYRLNWATFSAG--ERSSR------QDDGPDHTIFVGDLAAD 165
Query: 232 VDTARLEEIFREHGN-VENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGR 290
V L+E FR N V+ A++V+DR TGRS+G+GFV + E + A+ + G R
Sbjct: 166 VTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTR 225
Query: 291 TIRVSVAEGRS 301
+R+ A ++
Sbjct: 226 PMRIGPATNKN 236
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 11/183 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++G+L + ++ L F G + +VI NK T+QS G+GF+ +T E+ L +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 182 SGYEL--DGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEE 239
+G + G+ +N AT ER R ++VG+L V L+E
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAG--ERSSR------QDDGPDHTIFVGDLAADVTDYLLQE 173
Query: 240 IFR-EHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
FR + +V+ A++V+DR TGRS+G+GFV + E + A+ + G R +R+ A
Sbjct: 174 TFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Query: 299 GRS 301
++
Sbjct: 234 NKN 236
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 11/183 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++G+L + ++ L F G + +VI NK T+QS G+GF+ +T E+ L +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 182 SGYEL--DGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEE 239
+G + G+ +N AT ER R ++VG+L V L+E
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAG--ERSSR------QDDGPDHTIFVGDLAADVTDYLLQE 173
Query: 240 IFR-EHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
FR + +V+ A++V+DR TGRS+G+GFV + E + A+ + G R +R+ A
Sbjct: 174 TFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Query: 299 GRS 301
++
Sbjct: 234 NKN 236
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VGN+ +V + LA +F+ AG + ++I + ++ +GFV A+
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
G +L G+ L VN A +R + V+VG+L V A L F
Sbjct: 118 HGRQLYGQALKVNWAYANSSRED------------TSGHFNVFVGDLSPEVTDATLFACF 165
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
+ +AR++ D +TGRS+G+GFV+ D AI + G+ L R IR + A +
Sbjct: 166 SVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGA 225
Query: 302 GGRSS 306
GG S+
Sbjct: 226 GGSSN 230
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VGN+ +V + LA +F+ AG + ++I + ++ +GFV A+
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
G +L G+ L VN A +R + V+VG+L V A L F
Sbjct: 118 HGRQLYGQALKVNWAYANSSRED------------TSGHFNVFVGDLSPEVTDATLFACF 165
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
+ +AR++ D +TGRS+G+GFV+ D AI + G+ L R IR + A +
Sbjct: 166 SVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGA 225
Query: 302 GGRSS 306
GG S+
Sbjct: 226 GGSSN 230
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VGN+ +V + LA +F+ AG + ++I + ++ +GFV A+
Sbjct: 46 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 101
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
G +L G+ L VN A +R + V+VG+L V A L F
Sbjct: 102 HGRQLYGQALKVNWAYANSSRED------------TSGHFNVFVGDLSPEVTDATLFACF 149
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
+ +AR++ D +TGRS+G+GFV+ D AI + G+ L R IR + A +
Sbjct: 150 SVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGA 209
Query: 302 GGRSS 306
GG S+
Sbjct: 210 GGSSN 214
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 11/183 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++G+L + ++ L F G + +VI NK T+QS G+GF+ +T E+ L +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 182 SGYEL--DGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEE 239
+G + G+ +N AT ER R ++VG+L V L+E
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAG--ERSSR------QDDGPDHTIFVGDLAADVTDYLLQE 173
Query: 240 IFR-EHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
FR + +V+ A++V+DR TGRS+G+GFV + E + A+ + G R +R+ A
Sbjct: 174 TFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Query: 299 GRS 301
++
Sbjct: 234 NKN 236
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 11/182 (6%)
Query: 119 DLKIFVGNLPWDVESENLAMLFE-EAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
D IFVG+L DV L F SV+ A+V+ ++ T +S+G+GFV + + +A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXX----XXXXVYVGNLPWSVD 233
+ + G R + + AT K P+ ++VGNL +V
Sbjct: 214 MTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVT 273
Query: 234 TARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIR 293
L ++F ++G + + +I + GFV S + AI L+G L G+ +R
Sbjct: 274 DDHLRQVFTQYGELVHVKIPSGKRC------GFVQFSDRSCAEEAIRVLNGTLLGGQNVR 327
Query: 294 VS 295
+S
Sbjct: 328 LS 329
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + WD + L F+ G V A ++ ++ T ++RGFGFV+ + E+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 181 FSGYELDGRVLTVNKATPKEAR---PERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+ +DGR + KA P++ + + ++VG L +V +
Sbjct: 63 MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
+ F + G + + ++ D T R RGFGF+T SE
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P KIFVG L V + F++ G++ V+Y+ T + RGFGF+ + E +E
Sbjct: 102 PIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVE 161
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPR 208
K L+K + +EL+G+++ V +A PK+ P P R
Sbjct: 162 KVLHK-TFHELNGKMVEVKRAVPKDLSPS-PSR 192
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W + RL + F+ G+V A I+ DR TGR+RGFGFV + + + +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 283 DGQSLDGRTIRVSVA 297
+ +DGRT+ A
Sbjct: 64 EKHVIDGRTVEAKKA 78
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + WD + L F+ G V A ++ ++ T ++RGFGFV+ + E+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 181 FSGYELDGRVLTVNKATPKEAR---PERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+ +DGR + KA P++ + + ++VG L +V +
Sbjct: 63 MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
+ F + G + + ++ D T R RGFGF+T SE
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P KIFVG L V + F++ G++ V+Y+ T + RGFGF+ + E +E
Sbjct: 102 PIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVE 161
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPR 208
K L+K + +EL+G+++ V +A PK+ P P R
Sbjct: 162 KVLHK-TFHELNGKMVEVKRAVPKDLSPS-PSR 192
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W + RL + F+ G+V A I+ DR TGR+RGFGFV + + + +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 283 DGQSLDGRTIRVSVA 297
+ +DGRT+ A
Sbjct: 64 EKHVIDGRTVEAKKA 78
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + WD + L F+ G V A ++ ++ T ++RGFGFV+ + E+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 181 FSGYELDGRVLTVNKATPKEAR---PERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+ +DGR + KA P++ + + ++VG L +V +
Sbjct: 63 MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
+ F + G + + ++ D T R RGFGF+T SE
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P KIFVG L V + F++ G++ V+Y+ T + RGFGF+ + E +E
Sbjct: 102 PIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVE 161
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPR 208
K L+K + +EL+G+++ V +A PK+ P P R
Sbjct: 162 KVLHK-TFHELNGKMVEVKRAVPKDLSPS-PSR 192
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W + RL + F+ G+V A I+ DR TGR+RGFGFV + + + +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 283 DGQSLDGRTIRVSVA 297
+ +DGRT+ A
Sbjct: 64 EKHVIDGRTVEAKKA 78
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG + ++ D L + F ++G V +ARI+MDRE+GRS+GFGFVT ++ + + AI AL
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 283 DGQSLDGRTIRVSVAE 298
DGQ L GR + V+ A
Sbjct: 106 DGQDLYGRRVGVNFAN 121
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
+ K+FVG + ++ + ++L+ F + G V A +I ++ + +S+GFGFV +T E+ A+
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 179 NKFSGYELDGRVLTVNKATPKEARPERPPRTF 210
G +L GR + VN A ERP F
Sbjct: 103 QALDGQDLYGRRVGVNFAN------ERPRDGF 128
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG + ++ D L + F ++G V +ARI+MDRE+GRS+GFGFVT ++ + + AI AL
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 283 DGQSLDGRTIRVSVAE 298
DGQ L GR + V+ A
Sbjct: 106 DGQDLYGRRVGVNFAN 121
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
+ K+FVG + ++ + ++L+ F + G V A +I ++ + +S+GFGFV +T E+ A+
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 179 NKFSGYELDGRVLTVNKATPKEARPERPPRTF 210
G +L GR + VN A ERP F
Sbjct: 103 QALDGQDLYGRRVGVNFAN------ERPRDGF 128
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L WSVD L++ F G+V RIV D+++GR+RGFGFV S+E A A+
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 283 DGQSLDGRTIRVSVA 297
DG++L GR +R++ A
Sbjct: 98 DGKALLGRPLRINFA 112
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W V+ ++L F G V ++Y+K + ++RGFGFVI S + + A +
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 181 FSGYELDGRVLTVNKATPK 199
G L GR L +N A K
Sbjct: 97 MDGKALLGRPLRINFALEK 115
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 109 EVVASAEPSE--DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFV 166
+V A+ P++ ++VG+L DV L LF + G V + + A+ QS G+G+V
Sbjct: 11 DVAAAPVPNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYV 70
Query: 167 IMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVG 226
S D KA++ V TP +P R + +++
Sbjct: 71 NFSNPHDAAKAMD-------------VLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIK 117
Query: 227 NLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQS 286
NL ++D L + F GN+ + +I MD +G S+G+GFV +E AI L+G
Sbjct: 118 NLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKLNGML 176
Query: 287 LDGRTIRV 294
L+ + + V
Sbjct: 177 LNDKPVYV 184
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 7/183 (3%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NL V ++L F E G++ A V+ +S+ FGFV A+ +A+
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSA-VVMRDVDGKSKCFGFVNFENADAAAEAVEAL 263
Query: 182 SGYELDGRVLTVNKATPKEAR----PERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+G + D + V KA K R ER ++ +Y+ NL SV +L
Sbjct: 264 NGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGAN-LYLKNLDDSVTDEKL 322
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
E+F E G V + +I+ D + G SRG GFV S+ + A+A ++G+ + G+ + V+ A
Sbjct: 323 SELFSEFGTVTSCKILRDPQ-GISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPA 381
Query: 298 EGR 300
+ +
Sbjct: 382 QKK 384
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
IF+ NL ++ + L F G++ ++ + A+ S+G+GFV E + A++K
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKL 172
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+G L+ + + V K+ R VYV NL SV L+ F
Sbjct: 173 NGMLLNDKPVYVGHFQRKQDR---------DNALSNAKFNNVYVKNLSESVTDDDLKNTF 223
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGR 290
E+G + +A +VM G+S+ FGFV + A+ AL+G+ D +
Sbjct: 224 GEYGTITSA-VVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDK 271
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 16/189 (8%)
Query: 115 EPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+PS ++VGN+ V L +F G VE ++ + ++ +GF+
Sbjct: 57 DPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 112
Query: 175 EKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
A+ +G L G+ + VN A R + ++VG+L V
Sbjct: 113 ALAILTLNGRHLFGQPIKVNWAYASGQRED------------TSGHYNIFVGDLSPEVTD 160
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
A L F + + +AR++ D++TGRSRGFGFV+ S+ D AI L G+ L R IR
Sbjct: 161 ATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRC 220
Query: 295 SVAEGRSGG 303
+ A +GG
Sbjct: 221 NWATKGAGG 229
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 91/173 (52%), Gaps = 14/173 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VG+L DV L F E ++ A V + AT +S +G+V +S+ ++ +A+
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+ L+G+V+ V + ++A + + V+V NL S+D L ++F
Sbjct: 77 NHSSLNGKVIRVMWLS-RDADARKSGK------------GNVFVKNLAASIDNVGLHDLF 123
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
+++GN+ +++I E G+S+GFG++ SE N AI ++G ++ + I V
Sbjct: 124 QKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYV 175
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 3/179 (1%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NL V ++L F G + + I QS+GFGFV + +D +A+
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKI-VSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAM 254
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
G + ++L V +A K R + F +YV N+ SV L + F
Sbjct: 255 DGSQFGSKILYVARAQKKVEREQILHHLF-VEKGLKHMGSNIYVKNIDTSVGDEELRDHF 313
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGR 300
G V +A+++ D + G S+GFGFV S+ + +++ +G G+ + V A+ +
Sbjct: 314 SACGEVLSAKVMRD-DKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQKK 371
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 26/207 (12%)
Query: 96 WANEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNK 155
W + D+D + G+ +FV NL +++ L LF++ G++ + I
Sbjct: 90 WLSRDADARKSGKG-----------NVFVKNLAASIDNVGLHDLFQKYGNI-LSSKIARS 137
Query: 156 ATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEAR--PERPPRTFXXX 213
+S+GFG++ + E A+ K +G + + + V K K R P+ +
Sbjct: 138 EDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAK----- 192
Query: 214 XXXXXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEA 273
+YV NL V L E F G + + I D E G+S+GFGFV S
Sbjct: 193 ------FTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPD 245
Query: 274 DINGAIAALDGQSLDGRTIRVSVAEGR 300
D A+ A+DG + + V+ A+ +
Sbjct: 246 DARRAMEAMDGSQFGSKILYVARAQKK 272
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 199 KEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRET 258
K+A P P T +YVG+L V A+L + F E + +AR+ D T
Sbjct: 6 KDAVPASPAAT-------------LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSAT 52
Query: 259 GRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
G+S +G+V +SS + AI + SL+G+ IRV
Sbjct: 53 GKSLCYGYVNLSSHQEAIRAIELKNHSSLNGKVIRV 88
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VGN+ V L LF AG++E ++I + ++ +GFV A+
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTL 103
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+G + G+ + VN A + R + ++VG+L V A L F
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQRED------------TSGHFHIFVGDLSPEVTDATLYACF 151
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
+ + +AR++ D++TGRSRGFGFV+ ++ + AI L G+ L R IR + A
Sbjct: 152 SAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWA 207
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 50/212 (23%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S IFVG+L +V L F S A V++++ T +SRGFGFV ++ +
Sbjct: 128 SGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQS 187
Query: 177 ALNKFSGYELDGRVLTVNKATP------------------------KEAR-------PER 205
A+N +G L R + N AT +EA+ PE+
Sbjct: 188 AINDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEK 247
Query: 206 PPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIFREHG--NVENARIVMDRETGRSRG 263
P+ VYVGNL V + L F G +E+ R+ R +G
Sbjct: 248 NPQ-----------YTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQ------RDKG 290
Query: 264 FGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
FGFV S+ + AI + + L G+ I+ S
Sbjct: 291 FGFVRYSTHGEAALAIQMGNTRFLFGKPIKCS 322
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 25/172 (14%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S+ K+F+G + WD E L F G V+ A ++ ++ T ++RGFGFV+ +
Sbjct: 3 SDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADI 62
Query: 177 ALNKFSGYELDGRVLTVNKATPKEAR------------PERPPRTFXXXXXXXXXXXXVY 224
+ + + +DGR++ KA P++ + P RT ++
Sbjct: 63 VVQE--KHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRT-----------RKIF 109
Query: 225 VGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADIN 276
VG L +V + ++ F + G + + ++ D T R RGFGF+T SE ++
Sbjct: 110 VGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 110 VVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMS 169
+ S P KIFVG L V + F++ G++ V+Y+ T + RGFGF+
Sbjct: 96 IHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
Query: 170 TAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRT 209
+ E +++ L K + +EL+G+++ V +A PKE P P R+
Sbjct: 156 SEEAVDQVLLK-TFHELNGKMVEVKRAVPKELSPG-PARS 193
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W + RL E F +G V+ A I+ DR TGR+RGFGFV A + I
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAD--IVVQ 65
Query: 283 DGQSLDGRTIRVSVA 297
+ ++DGR + A
Sbjct: 66 EKHNIDGRMVEAKKA 80
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 10/181 (5%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEA-GSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
DL IFVG+L DV L F + SV+ A+V+Y+ T +S+G+GFV + +A
Sbjct: 189 DLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQA 248
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERP---PRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
+ + +G R + + ATP+++ +P ++VG L +V
Sbjct: 249 MTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTD 308
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
L++ F ++G + + +I + +G GFV ++ + A+ L+G + +T+R+
Sbjct: 309 EDLKQTFSQYGEIASVKIPV------GKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRL 362
Query: 295 S 295
S
Sbjct: 363 S 363
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E+ +++G+L ++ L F G + +VI NK + S G+GF + EK
Sbjct: 95 ENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKV 154
Query: 178 LNKFSGYELDG--RVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
L ++G + + +N AT + ++VG+L V +
Sbjct: 155 LQNYAGILMPNADQAFRLNWAT----------FSTGDKGSDNVTDLSIFVGDLAADVTDS 204
Query: 236 RLEEIFRE-HGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
L E F + +V+ A++V D TGRS+G+GFV E++ + A+ ++G R +R+
Sbjct: 205 VLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRI 264
Query: 295 SVAEGR 300
A R
Sbjct: 265 GAATPR 270
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 25/172 (14%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S+ K+F+G + WD E L F G V+ A ++ ++ T ++RGFGFV+ +
Sbjct: 3 SDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADI 62
Query: 177 ALNKFSGYELDGRVLTVNKATPKEAR------------PERPPRTFXXXXXXXXXXXXVY 224
+ + + +DGR++ KA P++ + P RT ++
Sbjct: 63 VVQE--KHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRT-----------RKIF 109
Query: 225 VGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADIN 276
VG L +V + ++ F + G + + ++ D T R RGFGF+T SE ++
Sbjct: 110 VGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 110 VVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMS 169
+ S P KIFVG L V + F++ G++ V+Y+ T + RGFGF+
Sbjct: 96 IHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
Query: 170 TAEDLEKALNKFSGYELDGRVLTVNKATPKEARP 203
+ E +++ L K + +EL+G+++ V +A PKE P
Sbjct: 156 SEEAVDQVLLK-TFHELNGKMVEVKRAVPKELSP 188
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W + RL E F +G V+ A I+ DR TGR+RGFGFV A + I
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAD--IVVQ 65
Query: 283 DGQSLDGRTIRVSVA 297
+ ++DGR + A
Sbjct: 66 EKHNIDGRMVEAKKA 80
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 10/177 (5%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+ L WD +E L LF G +E A VI +KAT +S+G+GFV + AL +
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALRE 133
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
S +DGRV A + +YV N+P + +L
Sbjct: 134 PS-KRIDGRVTVTQLAAAGN--------SGSNTNAADVAQRKIYVSNVPPDLPGDKLLAH 184
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
F +G +E + D++TGRS+GF + N A++ ++++GR + +A
Sbjct: 185 FSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPV-KNVEGRQLNCKLA 240
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++ NL D+ L F G + + + + S+GFGFV ED ++A+
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKI-ISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXX---XXVYVGNLPWSVDTARLE 238
+G +L ++L V +A K R + + F +YV N+ +V L
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 239 EIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
+ F G + +A+I+ D + G S+GFGFV S+ + N A+ + G G+ + VS+A+
Sbjct: 310 DHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQ 368
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+FV NL +++ L +F++ G++ ++V+ ++ +S+G+GFV T E A+ +
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE-DGKSKGYGFVQFETEESANAAIERL 158
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+GY + + + V K K R P T +Y+ NL + L E F
Sbjct: 159 NGYLVGDKQIYVGKFVKKSDRISSGPDT---------RYTNLYMKNLDLDISETLLREKF 209
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
G + + + D G S+GFGFV + D A+ ++G L + + V+ A+ ++
Sbjct: 210 SSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKA 268
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 21/187 (11%)
Query: 110 VVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMS 169
V SA P+ ++VG+L D+ L F + ++ + + ++ +S +G+V
Sbjct: 3 VPPSATPAS---LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFL 59
Query: 170 TAEDLEKALNKFSGYELDGRVLTV--NKATPKEARPERPPRTFXXXXXXXXXXXXVYVGN 227
+ D +A+ + L+G+ + V ++ P +AR V+V N
Sbjct: 60 SPHDAIRAIEVKNHSTLNGKAIRVMWSRRDP-DAR--------------KSCIGNVFVKN 104
Query: 228 LPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSL 287
L S+D + LE++F++ GN+ ++++VM E G+S+G+GFV +E N AI L+G +
Sbjct: 105 LAESIDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERLNGYLV 163
Query: 288 DGRTIRV 294
+ I V
Sbjct: 164 GDKQIYV 170
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
I+V N+ +V E L F G++ A+++ + S+GFGFV ST E+ KA+N F
Sbjct: 294 IYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDD-KGISKGFGFVCFSTPEEANKAVNSF 352
Query: 182 SGYELDGRVLTVNKATPKEAR 202
G+ G+ L V+ A KE R
Sbjct: 353 HGFMFHGKPLYVSLAQRKEDR 373
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 6/188 (3%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NL ++L F G++ A V+ A +S+ FGFV AED KA+
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSA-VLMRDADGRSKCFGFVNFENAEDAAKAVEAL 271
Query: 182 SGYELDGRVLTVNKATPKEARPE----RPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+G ++D + V KA K R + R +T +Y+ NL S+ +L
Sbjct: 272 NGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKL 331
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
+E+F E G + + +I+ D G SRG GFV S+ + + A+ ++G+ + + + V+VA
Sbjct: 332 KEMFSEFGTITSYKIMRD-PNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVA 390
Query: 298 EGRSGGRS 305
+ + R+
Sbjct: 391 QRKEDRRA 398
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VG+L +V L LF + G V V + AT +S G+G+V + +D +AL+
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+ ++ + + V + R P + +++ NL ++D L + F
Sbjct: 94 NFTPMNNKSIRVMYS-------HRDPSS------RKSGTANIFIKNLDKTIDHKALHDTF 140
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
G + + +I D +G+S+G+GFV +E AI L+G ++ + + V
Sbjct: 141 SSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFV 192
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
IF+ NL ++ + L F G + + I + QS+G+GFV + + A++K
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCK-IATDGSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+G ++ + + V K+ R +T VYV NL S L+ F
Sbjct: 181 NGMLINDKQVFVGHFLRKQDRDNVLSKT---------KFNNVYVKNLSESFTEDDLKNEF 231
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
+G + +A ++ D + GRS+ FGFV + D A+ AL+G+ +D + V A+ +S
Sbjct: 232 GAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKS 290
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVG+L +V+ ++L ++F + G V + R+ D T RS G+G+V ++ D A+ L
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
+ ++ ++IRV + R S
Sbjct: 94 NFTPMNNKSIRVMYSHRDPSSRKS 117
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 6/181 (3%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NL E+L LF G + A VI S+ FGFV + + A+ K
Sbjct: 107 VYVKNLLETDTDEDLKKLFSTYGVITSA-VIMKDENGNSKCFGFVNFQSPDSAAAAVEKL 165
Query: 182 SGYEL-DGRVLTVNKATPKEARPERPPRTFXXXXXX---XXXXXXVYVGNLPWSVDTARL 237
+G DG+VL V +A K R F +Y+ NL S++ +L
Sbjct: 166 NGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKL 225
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
+E+F E G + + +++ D G S+GFGFV S+ + + AI + G+ + + + V VA
Sbjct: 226 KEMFSEFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVA 284
Query: 298 E 298
+
Sbjct: 285 Q 285
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 108 EEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVI 167
+E + E + +++ NL + E L +F E G++ +V+++ A S+GFGFV
Sbjct: 197 QEKIKRYEKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFD-AHGHSKGFGFVA 255
Query: 168 MSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPER 205
ST+E+ KA+N SG + + L V A KE R R
Sbjct: 256 FSTSEEASKAINGMSGKIIGQKPLYVVVAQRKEDRKTR 293
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 109 EVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIM 168
V + +++ ++VG+L ++ L F G + +VI NK T Q+ G+GFV
Sbjct: 82 HVHHGSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEF 141
Query: 169 STAEDLEKALNKFSGYELDG--RVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVG 226
++ EK L ++G + + +N AT +R ++VG
Sbjct: 142 TSHGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKR---------SDNVPDLSIFVG 192
Query: 227 NLPWSV-DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ 285
+L V DT LE ++ +V+ A++V D TGRS+G+GFV + + + A+ ++G
Sbjct: 193 DLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGV 252
Query: 286 SLDGRTIRVSVAEGR 300
R +R+ A R
Sbjct: 253 FCSSRAMRIGAATPR 267
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FV L + +E L +F G ++ A VI++KAT +S+G+GFV+ + AL +
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKE 136
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
S ++DGR+ A V+VGN+P+ V L
Sbjct: 137 PSK-KIDGRMTVTQLAA-------------AGSTGGDVSSRKVFVGNVPFEVSAESLLSE 182
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
F ++G +E + D+ +G++RGF F +E ++A +++DG + A
Sbjct: 183 FSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAE-SMKTVDGHQVICKFA 238
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 109 EVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIM 168
V + +++ ++VG+L ++ L F G + +VI NK T Q+ G+GFV
Sbjct: 82 HVHHGSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEF 141
Query: 169 STAEDLEKALNKFSGYELDG--RVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVG 226
++ EK L ++G + + +N AT +R ++VG
Sbjct: 142 TSHGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKR---------SDNVPDLSIFVG 192
Query: 227 NLPWSV-DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ 285
+L V DT LE ++ +V+ A++V D TGRS+G+GFV + + + A+ ++G
Sbjct: 193 DLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGV 252
Query: 286 SLDGRTIRVSVAEGR 300
R +R+ A R
Sbjct: 253 FCSSRAMRIGAATPR 267
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 10/181 (5%)
Query: 119 DLKIFVGNLPWDVESENLAMLF-EEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
DL IFVG+L DV L F ++ SV+ A+V+++ T +S+G+GFV + KA
Sbjct: 186 DLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKA 245
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERP---PRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
LN+ +G R + + ATP+++ + ++VG L S
Sbjct: 246 LNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATA 305
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
L + F ++G + + +I + +G GFV ++ + A+ L+G ++ +T+R+
Sbjct: 306 EDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRL 359
Query: 295 S 295
S
Sbjct: 360 S 360
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E K+ V +PWDV++E L + G +E V+ ++T +SRGFG+V ++ +D ++
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
L+ + L R+L V ATPKE R P ++V +P SV
Sbjct: 62 LS--GEHVLGDRMLEVKVATPKEEM--RAP---------AKKVTRIFVARIPPSVTEETF 108
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVT----------MSSEADINGAIAALD 283
F ++G++ + + D+ + RG GF+T MS ++ G+ +D
Sbjct: 109 RSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD 164
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 227 NLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQS 286
+PW VDT L+E ++G +E+ ++ +R TGRSRGFG+VT +S ++ A L G+
Sbjct: 10 GIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFAS---VDDAKEVLSGEH 66
Query: 287 LDG-RTIRVSVA 297
+ G R + V VA
Sbjct: 67 VLGDRMLEVKVA 78
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E K+ V +PWDV++E L + G +E V+ ++T +SRGFG+V ++ +D ++
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
L+ + L R+L V ATPKE R P ++V +P SV
Sbjct: 62 LS--GEHVLGDRMLEVKVATPKEEM--RAP---------AKKVTRIFVARIPPSVTEETF 108
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVT----------MSSEADINGAIAALD 283
F ++G++ + + D+ + RG GF+T MS ++ G+ +D
Sbjct: 109 RSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD 164
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 227 NLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQS 286
+PW VDT L+E ++G +E+ ++ +R TGRSRGFG+VT +S ++ A L G+
Sbjct: 10 GIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFAS---VDDAKEVLSGEH 66
Query: 287 LDG-RTIRVSVA 297
+ G R + V VA
Sbjct: 67 VLGDRMLEVKVA 78
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E K+ V +PWDV++E L + G +E V+ ++T +SRGFG+V ++ +D ++
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
L+ + L R+L V ATPKE R P ++V +P SV
Sbjct: 62 LS--GEHVLGDRMLEVKVATPKEEM--RAP---------AKKVTRIFVARIPPSVTEETF 108
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVT----------MSSEADINGAIAALD 283
F ++G++ + + D+ + RG GF+T MS ++ G+ +D
Sbjct: 109 RSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD 164
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 227 NLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQS 286
+PW VDT L+E ++G +E+ ++ +R TGRSRGFG+VT +S ++ A L G+
Sbjct: 10 GIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFAS---VDDAKEVLSGEH 66
Query: 287 LDG-RTIRVSVA 297
+ G R + V VA
Sbjct: 67 VLGDRMLEVKVA 78
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E K+ V +PWDV++E L + G +E V+ ++T +SRGFG+V ++ +D ++
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
L+ + L R+L V ATPKE R P ++V +P SV
Sbjct: 62 LS--GEHVLGDRMLEVKVATPKEEM--RAP---------AKKVTRIFVARIPPSVTEETF 108
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVT----------MSSEADINGAIAALD 283
F ++G++ + + D+ + RG GF+T MS ++ G+ +D
Sbjct: 109 RSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD 164
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 227 NLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQS 286
+PW VDT L+E ++G +E+ ++ +R TGRSRGFG+VT +S ++ A L G+
Sbjct: 10 GIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFAS---VDDAKEVLSGEH 66
Query: 287 LDG-RTIRVSVA 297
+ G R + V VA
Sbjct: 67 VLGDRMLEVKVA 78
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 13/178 (7%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIF+G L + F + G + + ++ ++ T Q RGFGF+ + ++K +
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIE- 104
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+ ++ + + + + P+ A + RT ++VG +P +V +
Sbjct: 105 -DSHIINSKQVEIKRTIPRGAVGSKDFRT-----------KKIFVGGIPSNVTEDEFRDF 152
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
F +G V++ +I+ D T RSRGFGFVT +E ++ ++ + G + + AE
Sbjct: 153 FTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAE 210
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG +P +V + F G V+ +++ + +TN+SRGFGFV T E ++ L+
Sbjct: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSM 193
Query: 181 FSGYELDGRVLTVNKATPKEARPERP 206
+ E G + + KA PK+A P
Sbjct: 194 GNKIEFAGTQVEIKKAEPKKANAPPP 219
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VG+L +V L LF + G V V + T +S G+G+V S +D +AL+
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD-- 93
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
V TP RP R + +++ NL ++D L + F
Sbjct: 94 -----------VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTF 142
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
GN+ + ++ +D +G+S+G+GFV +E AI L+G L+ + + V
Sbjct: 143 SSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
IF+ NL ++ + L F G++ +V + + QS+G+GFV T E +KA+ K
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+G L+ + + V K+ R R V+V NL S L++ F
Sbjct: 183 NGMLLNDKQVYVGPFLRKQERESTGDRA---------KFNNVFVKNLSESTTDDELKKTF 233
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
E G + +A +VM G+S+ FGFV S D A+ AL+G+ +D + V A+ +S
Sbjct: 234 GEFGTITSA-VVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKS 292
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 5/187 (2%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+FV NL + L F E G++ A V+ +S+ FGFV + +D +A+
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSA-VVMRDGDGKSKCFGFVNFESTDDAARAVEAL 273
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXX---XXVYVGNLPWSVDTARLE 238
+G ++D + V KA K R F +YV NL S+ +L+
Sbjct: 274 NGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLK 333
Query: 239 EIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
E+F +G + + +++ D G SRG GFV S+ + + A+ ++G+ + + + V++A+
Sbjct: 334 ELFSSYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQ 392
Query: 299 GRSGGRS 305
+ R+
Sbjct: 393 RKEDRRA 399
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 14/184 (7%)
Query: 111 VASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMST 170
+ SA E+ ++VG+L +V L LF + V V ++ T S G+G+V S
Sbjct: 16 LTSAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSN 75
Query: 171 AEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPW 230
A D A+ + L+G +P R + +++ NL
Sbjct: 76 ARDAANAMENLNYVPLNG-------------KPIRIMFSHRDPLIRKTGFANLFIKNLET 122
Query: 231 SVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGR 290
S+D L E F GNV + ++ MD G S+G GFV ++ AI LDG ++ +
Sbjct: 123 SIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDK 181
Query: 291 TIRV 294
+ V
Sbjct: 182 KVYV 185
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 6/181 (3%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NL E+L LF G + + +I S+ FGFV +++ A+ K
Sbjct: 202 VYVKNLSESYTYEDLKQLFNSFGVIT-SVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKL 260
Query: 182 SGYEL-DGRVLTVNKATPKEARPERPPRTFXXXXXXXXXX---XXVYVGNLPWSVDTARL 237
+G DG+VL V +A K R F +Y+ N+ S++ +L
Sbjct: 261 NGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKL 320
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
+E+F E G + + +++ D GRS+G GFV ++ + + AI ++G+ + + + VSVA
Sbjct: 321 KELFSEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVA 379
Query: 298 E 298
+
Sbjct: 380 Q 380
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 11/198 (5%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S+ K+FVG + + + L F + G V + + +++ T RGFGFV S
Sbjct: 7 SDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHN 66
Query: 177 ALNKFSGYELDGRVLTVNKATPKE------ARPERPPRTFXXXXXXXXX--XXXVYVGNL 228
AL + + GR + V KA P+ R ++ ++VG L
Sbjct: 67 ALQ--DTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGL 124
Query: 229 PWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLD 288
P ++ + F G + + ++ D T R RGFGF+T SE + ++ L+
Sbjct: 125 PANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQ-SVMMRSFHDLN 183
Query: 289 GRTIRVSVAEGRSGGRSS 306
GR + V A R G S
Sbjct: 184 GRQVEVKRAVPREGNAGS 201
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 26/205 (12%)
Query: 105 EGGEEVVASAEPSEDLK-IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGF 163
E E V A+P D + +F +P ++ F +AG V +I ++ + +S+G
Sbjct: 199 EKKETVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 258
Query: 164 GFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXV 223
G++ A + A+ L G++L P +P + V
Sbjct: 259 GYIEFYDAMSVPMAIA------LSGQLLL---GQPVMVKPSEAEKNLVQSNTTTGAAGVV 309
Query: 224 ----------YVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEA 273
YVGNL +++ ++L EIF G VE ++ +D ETG +GFGF+ A
Sbjct: 310 GPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQF---A 366
Query: 274 DINGAIAA--LDGQ-SLDGRTIRVS 295
I A AA L+G+ + GRTI+VS
Sbjct: 367 HIEHAKAAQSLNGKLEIAGRTIKVS 391
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 26/205 (12%)
Query: 105 EGGEEVVASAEPSEDLK-IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGF 163
E E V A+P D + +F +P ++ F +AG V +I ++ + +S+G
Sbjct: 199 EKKETVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 258
Query: 164 GFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXV 223
G++ A + A+ L G++L P +P + V
Sbjct: 259 GYIEFYDAMSVPMAIA------LSGQLLL---GQPVMVKPSEAEKNLVQSNTTTGAAGVV 309
Query: 224 ----------YVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEA 273
YVGNL +++ ++L EIF G VE ++ +D ETG +GFGF+ A
Sbjct: 310 GPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQF---A 366
Query: 274 DINGAIAA--LDGQ-SLDGRTIRVS 295
I A AA L+G+ + GRTI+VS
Sbjct: 367 HIEHAKAAQSLNGKLEIAGRTIKVS 391
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 26/205 (12%)
Query: 105 EGGEEVVASAEPSEDLK-IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGF 163
E E V A+P D + +F +P ++ F +AG V +I ++ + +S+G
Sbjct: 199 EKKETVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 258
Query: 164 GFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXV 223
G++ A + A+ L G++L P +P + V
Sbjct: 259 GYIEFYDAMSVPMAIA------LSGQLLL---GQPVMVKPSEAEKNLVQSNTTTGAAGVV 309
Query: 224 ----------YVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEA 273
YVGNL +++ ++L EIF G VE ++ +D ETG +GFGF+ A
Sbjct: 310 GPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQF---A 366
Query: 274 DINGAIAA--LDGQ-SLDGRTIRVS 295
I A AA L+G+ + GRTI+VS
Sbjct: 367 HIEHAKAAQSLNGKLEIAGRTIKVS 391
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 15/196 (7%)
Query: 108 EEVVASAEPSEDLK-IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFV 166
E V A+P D + +F +P ++ F +AG V +I ++ + +S+G G++
Sbjct: 189 ENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYI 248
Query: 167 IMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXV--- 223
A + A+ SG L G+ + V P EA V
Sbjct: 249 EFYDAMSVPMAI-ALSGQLLLGQPVMVK---PSEAEKNLVQSNASSGAAVVGPYGAVDRK 304
Query: 224 -YVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAA- 281
YVGNL +++ A L EIF G +E ++ +D ETG +GFGFV A + A AA
Sbjct: 305 LYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQF---AHLEHAKAAQ 361
Query: 282 -LDGQ-SLDGRTIRVS 295
L+G+ + GRTI+VS
Sbjct: 362 SLNGKLEIAGRTIKVS 377
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V+VGN+P+ +L+EI RE G V + R+V DRETG+ +G+GF + E A L
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 283 DGQSLDGRTIRVSVAEGRSG 302
G ++GR +RV AE G
Sbjct: 91 QGYEINGRQLRVDFAENDKG 110
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 113 SAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAE 172
+A S+ +FVGN+P+D E L + E G V ++ ++ T + +G+GF + E
Sbjct: 22 AAPQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEE 81
Query: 173 DLEKALNKFSGYELDGRVLTVNKA 196
A GYE++GR L V+ A
Sbjct: 82 TALSARRNLQGYEINGRQLRVDFA 105
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 6/181 (3%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V N+ E+L LF G + A V+ + A +SR FGFV + + A+ K
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 182 SGYEL-DGRVLTVNKATPKEARPERPPRTFXX---XXXXXXXXXXVYVGNLPWSVDTARL 237
+G + D +VL V +A K R F +Y+ NL + +L
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKL 329
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
+++F E G V + R+++D G S+G GFV S+ + N A+ ++G+ + + + V+VA
Sbjct: 330 KDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVA 388
Query: 298 E 298
+
Sbjct: 389 Q 389
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 14/179 (7%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P + ++VG+L V L LF + V V ++ S G+ +V + A+D
Sbjct: 26 PFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAA 85
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
A + TP +P R + V++ NL S+D
Sbjct: 86 NAKELLN-------------FTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHK 132
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
L + F G V + ++ +D G+S+G+GFV +E AI LDG ++ + + V
Sbjct: 133 ALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYV 190
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 6/181 (3%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V N+ E+L LF G + A V+ + A +SR FGFV + + A+ K
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 182 SGYEL-DGRVLTVNKATPKEARPERPPRTFXX---XXXXXXXXXXVYVGNLPWSVDTARL 237
+G + D +VL V +A K R F +Y+ NL + +L
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKL 329
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
+++F E G V + R+++D G S+G GFV S+ + N A+ ++G+ + + + V+VA
Sbjct: 330 KDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVA 388
Query: 298 E 298
+
Sbjct: 389 Q 389
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 14/179 (7%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P + ++VG+L V L LF + V V ++ S G+ +V + A+D
Sbjct: 26 PFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAA 85
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
A + TP +P R + V++ NL S+D
Sbjct: 86 NAKELLN-------------FTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHK 132
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
L + F G V + ++ +D G+S+G+GFV +E AI LDG ++ + + V
Sbjct: 133 ALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYV 190
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E+ +++G+L ++ L F G + +VI NK + S G+GF + EK
Sbjct: 95 ENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKV 154
Query: 178 LNKFSGYELDG--RVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
L ++G + + +N AT + ++VG+L V +
Sbjct: 155 LQNYAGILMPNADQAFRLNWAT----------FSTGDKGSDNVTDLSIFVGDLAADVTDS 204
Query: 236 RLEEIFRE-HGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
L E F + +V+ A++V D TGRS+G+GFV E++ + A+ ++G R +R+
Sbjct: 205 VLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRI 264
Query: 295 SVAEGR 300
A R
Sbjct: 265 GAATPR 270
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEA-GSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
DL IFVG+L DV L F + SV+ A+V+Y+ T +S+G+GFV + +A
Sbjct: 189 DLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQA 248
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERP 206
+ + +G R + + ATP+++ +P
Sbjct: 249 MTQMNGVYCSSRPMRIGAATPRKSSGHQP 277
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAG-SVEFAEVIYNKATNQSR--GFGFVIM--STAEDLE 175
++F+GN+P + E G VE ++I + NQSR GF FV+ + D
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKD-PQNQSRNRGFAFVLYYNNACADFS 243
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
+ G++LDG TV A PK T +YV N+P +V T
Sbjct: 244 RQKMSSVGFKLDGITPTVTWADPK---------TSPDQSAAASQVKALYVKNIPENVTTE 294
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
+L+E+FR HG V + + +G+ R FGF+ + + A+ + +DG+ + V
Sbjct: 295 QLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKETEKYEIDGQALEVV 353
Query: 296 VAE 298
+A+
Sbjct: 354 IAK 356
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 29/207 (14%)
Query: 100 DSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQ 159
D +E E +E+++ P ++F+G LP D +++ L E G + ++I ++ T +
Sbjct: 86 DEEEREKHDELLSR--PPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGE 143
Query: 160 SRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXX 219
S+G+ FV T E +KA++ E G+ L + K
Sbjct: 144 SKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKH------------------- 184
Query: 220 XXXVYVGNLP--WSVDTARLEEIFREHGNVENARIVMD-RETGRSRGFGFVTMSSE--AD 274
+++GN+P W+ D R + + VE+ ++ D + R+RGF FV + AD
Sbjct: 185 --RLFIGNIPKTWTEDEFR-KAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACAD 241
Query: 275 INGAIAALDGQSLDGRTIRVSVAEGRS 301
+ + G LDG T V+ A+ ++
Sbjct: 242 FSRQKMSSVGFKLDGITPTVTWADPKT 268
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAG-SVEFAEVIYNKATNQSR--GFGFVIM--STAEDLE 175
++F+GN+P + E G VE ++I + NQSR GF FV+ + D
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKD-PQNQSRNRGFAFVLYYNNACADFS 243
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
+ G++LDG TV A PK T +YV N+P +V T
Sbjct: 244 RQKMSSVGFKLDGITPTVTWADPK---------TSPDQSAAASQVKALYVKNIPENVTTE 294
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
+L+E+FR HG V + + +G+ R FGF+ + + A+ + +DG+ + V
Sbjct: 295 QLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKETEKYEIDGQALEVV 353
Query: 296 VAE 298
+A+
Sbjct: 354 IAK 356
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 29/207 (14%)
Query: 100 DSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQ 159
D +E E +E+++ P ++F+G LP D +++ L E G + ++I ++ T +
Sbjct: 86 DEEEREKHDELLSR--PPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGE 143
Query: 160 SRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXX 219
S+G+ FV T E +KA++ E G+ L + K
Sbjct: 144 SKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKH------------------- 184
Query: 220 XXXVYVGNLP--WSVDTARLEEIFREHGNVENARIVMD-RETGRSRGFGFVTMSSE--AD 274
+++GN+P W+ D R + + VE+ ++ D + R+RGF FV + AD
Sbjct: 185 --RLFIGNIPKTWTEDEFR-KAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACAD 241
Query: 275 INGAIAALDGQSLDGRTIRVSVAEGRS 301
+ + G LDG T V+ A+ ++
Sbjct: 242 FSRQKMSSVGFKLDGITPTVTWADPKT 268
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAG-SVEFAEVIYNKATNQSR--GFGFVIM--STAEDLE 175
++F+GN+P + E G VE ++I + NQSR GF FV+ + D
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKD-PQNQSRNRGFAFVLYYNNACADFS 243
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
+ G++LDG TV A PK T +YV N+P +V T
Sbjct: 244 RQKMSSVGFKLDGITPTVTWADPK---------TSPDQSAAASQVKALYVKNIPENVTTE 294
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
+L+E+FR HG V + + +G+ R FGF+ + + A+ + +DG+ + V
Sbjct: 295 QLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKETEKYEIDGQALEVV 353
Query: 296 VAE 298
+A+
Sbjct: 354 IAK 356
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 29/207 (14%)
Query: 100 DSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQ 159
D +E E +E+++ P ++F+G LP D +++ L E G + ++I ++ T +
Sbjct: 86 DEEEREKHDELLSR--PPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGE 143
Query: 160 SRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXX 219
S+G+ FV T E +KA++ E G+ L + K
Sbjct: 144 SKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKH------------------- 184
Query: 220 XXXVYVGNLP--WSVDTARLEEIFREHGNVENARIVMD-RETGRSRGFGFVTMSSE--AD 274
+++GN+P W+ D R + + VE+ ++ D + R+RGF FV + AD
Sbjct: 185 --RLFIGNIPKTWTEDEFR-KAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACAD 241
Query: 275 INGAIAALDGQSLDGRTIRVSVAEGRS 301
+ + G LDG T V+ A+ ++
Sbjct: 242 FSRQKMSSVGFKLDGITPTVTWADPKT 268
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G L ++VD L + F +G+V AR++ DRETGRSRGFGFV +SE A+ ++
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SM 96
Query: 283 DGQ 285
DGQ
Sbjct: 97 DGQ 99
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG++P E++ LFEE G+V +I ++ T Q +G F+ +T+E+ ++A+
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 181 FSG-YELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEE 239
+ L G V + + A ER ++VG+L +EE
Sbjct: 149 LHNRHTLPGGVGPIQV---RYADGER--------ERLGAVEYKLFVGSLNKQASVKEVEE 197
Query: 240 IFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
+F ++G +E+ ++ D + +SRG GFV S AI AL+G
Sbjct: 198 VFSKYGRIEDVYLMRDDQK-QSRGCGFVKYSHRDMALAAINALNG 241
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 11/177 (6%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K++VG +P+ +++ FE G++ + T + RG + T ++AL
Sbjct: 221 KVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRAL-A 279
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
G ++ G L + +P + + +YVG+L W + L +
Sbjct: 280 LDGADMGGLFLKI--------QPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKF 331
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
F + NV+ R+ MD+ETG RG+ V + A+ ALD L GR +R+S A
Sbjct: 332 FS-NCNVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTAL-ALDQSVLFGRPVRISCA 386
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+Y+G LP +++ L ++F++ G + A+++ DR TG S+G+GFV + N AI A+
Sbjct: 453 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAM 512
Query: 283 DGQSLDGRTIRVSVA 297
+G L+GRTI V VA
Sbjct: 513 NGYRLEGRTIAVRVA 527
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 94 PTWANEDSD---ETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAE 150
P WAN + G A + +D +++G LP +E + L LF++ G + A+
Sbjct: 422 PPWANNSGSGGSTPQAGLGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAK 481
Query: 151 VIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKA 196
VI ++ T S+G+GFV + A+ +GY L+GR + V A
Sbjct: 482 VIKDRITGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVA 527
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 21/194 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEE------AGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+++VG LP +++A F + S + + N N + F FV M T E+
Sbjct: 59 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEA 118
Query: 175 EKALNKFSGYELDGRVLTVNKAT---PKEAR---PERPPRTFXXXXXXXXXXXX------ 222
A+ G +G + V + T P A P +P
Sbjct: 119 SNAM-ALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAEGL 177
Query: 223 --VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
++VG LP+ ++ E+ + G + + IV D+ETG S+G+GF A + A A
Sbjct: 178 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 237
Query: 281 ALDGQSLDGRTIRV 294
AL+G + +T+ V
Sbjct: 238 ALNGLKMGDKTLTV 251
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 21/194 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEE------AGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+++VG LP +++A F + S + + N N + F FV M T E+
Sbjct: 16 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEA 75
Query: 175 EKALNKFSGYELDGRVLTVNKAT---PKEAR---PERPPRTFXXXXXXXXXXXX------ 222
A+ G +G + V + T P A P +P
Sbjct: 76 SNAM-ALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAEGL 134
Query: 223 --VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
++VG LP+ ++ E+ + G + + IV D+ETG S+G+GF A + A A
Sbjct: 135 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 194
Query: 281 ALDGQSLDGRTIRV 294
AL+G + +T+ V
Sbjct: 195 ALNGLKMGDKTLTV 208
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD +E L F + G +E + + +KA+ +S+G+ F++ +AL +
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+ R + A+ ++V N+ +D +L E
Sbjct: 226 PQKV-IGNRTTSCQLASAGPVP----APPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEF 280
Query: 241 FREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
F++ G V++ + +D+ TG+ +GF FV + E+
Sbjct: 281 FKQFGEVDDGPLGLDKATGKPKGFALFVYKTVES 314
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD +E L F + G +E + + +KA+ +S+G+ F++ +AL +
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+ R + A+ ++V N+ +D +L E
Sbjct: 226 PQKV-IGNRTTSCQLASAGPVP----APPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEF 280
Query: 241 FREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
F++ G V++ + +D+ TG+ +GF FV + E+
Sbjct: 281 FKQFGEVDDGPLGLDKATGKPKGFALFVYKTVES 314
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD +E L F + G +E + + +KA+ +S+G+ F++ +AL +
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+ R + A+ ++V N+ +D +L E
Sbjct: 226 PQKV-IGNRTTSCQLASAGPVP----APPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEF 280
Query: 241 FREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
F++ G V++ + +D+ TG+ +GF FV + E+
Sbjct: 281 FKQFGEVDDGPLGLDKATGKPKGFALFVYKTVES 314
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 21/197 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEE------AGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+++VG LP +++A F + S + + N N + F FV M T E+
Sbjct: 179 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEA 238
Query: 175 EKALNKFSGYELDGRVLTVNKAT---PKEAR---PERPPRTFXXXXXXXXXXX------- 221
A+ G +G + V + T P A P +P
Sbjct: 239 SNAM-ALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAEGL 297
Query: 222 -XVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
++VG LP+ ++ E+ + G + + IV D+ETG S+G+GF A + A A
Sbjct: 298 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 357
Query: 281 ALDGQSLDGRTIRVSVA 297
AL+G + +T+ V A
Sbjct: 358 ALNGLKMGDKTLTVRRA 374
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P KIFVG L V + F++ G++ V+Y+ T + RGFGF+ + E +E
Sbjct: 32 PIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVE 91
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPR 208
K L+K + +EL+G+++ V +A PK+ P P R
Sbjct: 92 KVLHK-TFHELNGKMVEVKRAVPKDLSPS-PSR 122
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 21/197 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEE------AGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+++VG LP +++A F + S + + N N + F FV M T E+
Sbjct: 164 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEA 223
Query: 175 EKALNKFSGYELDGRVLTVNKAT---PKEAR---PERPPRTFXXXXXXXXXXX------- 221
A+ G +G + V + T P A P +P
Sbjct: 224 SNAM-ALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAEGL 282
Query: 222 -XVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
++VG LP+ ++ E+ + G + + IV D+ETG S+G+GF A + A A
Sbjct: 283 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 342
Query: 281 ALDGQSLDGRTIRVSVA 297
AL+G + +T+ V A
Sbjct: 343 ALNGLKMGDKTLTVRRA 359
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 100 DSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQ 159
D DE E EVV ++ ++FVG L D ++L +F E G V ++ N T +
Sbjct: 195 DVDEEEH-REVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKK 253
Query: 160 SRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXX 219
++GF F+ E ++A+ + ++G+ V TP +
Sbjct: 254 NKGFAFLRFENVEQAKRAVAELKNPVINGKQCGV---TPSQ------------------D 292
Query: 220 XXXVYVGNLPWSVDTARLEEIFREHG--NVENARIVMD-RETGRSRGFGFVTMSSEADIN 276
+Y+GN+ + L+E + +G NVE+ +V D + G +RGF F+ SS +D
Sbjct: 293 SDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAM 352
Query: 277 GAIAAL 282
A L
Sbjct: 353 DAFKRL 358
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 100 DSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQ 159
D DE E EVV ++ ++FVG L D ++L +F E G V ++ N T +
Sbjct: 195 DVDEEEH-REVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKK 253
Query: 160 SRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXX 219
++GF F+ E ++A+ + ++G+ V TP +
Sbjct: 254 NKGFAFLRFENVEQAKRAVAELKNPVINGKQCGV---TPSQ------------------D 292
Query: 220 XXXVYVGNLPWSVDTARLEEIFREHG--NVENARIVMD-RETGRSRGFGFVTMSSEADIN 276
+Y+GN+ + L+E + +G NVE+ +V D + G +RGF F+ SS +D
Sbjct: 293 SDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAM 352
Query: 277 GAIAAL 282
A L
Sbjct: 353 DAFKRL 358
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 100 DSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQ 159
D DE E EVV ++ ++FVG L D ++L +F E G V ++ N T +
Sbjct: 196 DVDEEEH-REVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKK 254
Query: 160 SRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXX 219
++GF F+ E ++A+ + ++G+ V TP +
Sbjct: 255 NKGFAFLRFENVEQAKRAVAELKNPVINGKQCGV---TPSQ------------------D 293
Query: 220 XXXVYVGNLPWSVDTARLEEIFREHG--NVENARIVMD-RETGRSRGFGFVTMSSEADIN 276
+Y+GN+ + L+E + +G NVE+ +V D + G +RGF F+ SS +D
Sbjct: 294 SDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAM 353
Query: 277 GAIAAL 282
A L
Sbjct: 354 DAFKRL 359
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 100 DSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQ 159
D DE E EVV ++ ++FVG L D ++L +F E G V ++ N T +
Sbjct: 196 DVDEEEH-REVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKK 254
Query: 160 SRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXX 219
++GF F+ E ++A+ + ++G+ V TP +
Sbjct: 255 NKGFAFLRFENVEQAKRAVAELKNPVINGKQCGV---TPSQ------------------D 293
Query: 220 XXXVYVGNLPWSVDTARLEEIFREHG--NVENARIVMD-RETGRSRGFGFVTMSSEADIN 276
+Y+GN+ + L+E + +G NVE+ +V D + G +RGF F+ SS +D
Sbjct: 294 SDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAM 353
Query: 277 GAIAAL 282
A L
Sbjct: 354 DAFKRL 359
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+ V NL D +L LF GSV V +K T SRGFGFV ED ++A+NK
Sbjct: 201 VRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINKL 260
Query: 182 SGYELDGRVLTVNKATPK 199
+GY D +L V ATP+
Sbjct: 261 NGYGYDNLILKVEWATPR 278
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E +K+FVG +P + + L LF+E V+ +I +KAT SRG FVI + ++ +KA
Sbjct: 14 ESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKA 73
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+N NK T A P + +++G LP ++ +
Sbjct: 74 VNACH-----------NKKTLPGA--SSPLQVKYADGELERLEHKLFIGMLPKNISEVEV 120
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ-SLDGRTIRVSV 296
+F ++G +++ +I+ + S+G F+ ++ A+ A++G+ ++G ++ + V
Sbjct: 121 SALFSKYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 179
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E +K+FVG +P + + L LF+E V+ +I +KAT SRG FVI + ++ +KA
Sbjct: 14 ESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKA 73
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+N NK T A P + +++G LP ++ +
Sbjct: 74 VNACH-----------NKKTLPGA--SSPLQVKYADGELERLEHKLFIGMLPKNISEVEV 120
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ-SLDGRTIRVSV 296
+F ++G +++ +I+ + G F+ ++ A+ A++G+ ++G ++ + V
Sbjct: 121 SALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 180
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E +K+FVG +P + + L LF+E V+ +I +KAT SRG FVI + ++ +KA
Sbjct: 14 ESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKA 73
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+N NK T A P + +++G LP ++ +
Sbjct: 74 VNACH-----------NKKTLPGA--SSPLQVKYADGELERLEHKLFIGMLPKNISEVEV 120
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ-SLDGRTIRVSV 296
+F ++G +++ +I+ + S+G F+ ++ A+ A++G+ ++G ++ + V
Sbjct: 121 SALFSKYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 179
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+ V NL D +L LF G+V V ++ T SRGFGFV + ED ++A+NK
Sbjct: 213 VRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKL 272
Query: 182 SGYELDGRVLTVNKATPK 199
+GY D +L V ATP+
Sbjct: 273 NGYGYDNLILRVEWATPR 290
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 39/79 (49%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V V NL L E+FR G V + +D++TG SRGFGFV S D AI L
Sbjct: 213 VRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKL 272
Query: 283 DGQSLDGRTIRVSVAEGRS 301
+G D +RV A R+
Sbjct: 273 NGYGYDNLILRVEWATPRT 291
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++ L ++ + L + F +HG + +++ + TG S+G+GFV +SE A L
Sbjct: 35 LFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKEL 94
Query: 283 DGQSLDGRTIRVSVAE 298
GQ +DGR IRV A
Sbjct: 95 HGQIVDGRRIRVGYAH 110
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L + E LA F + G+V A+++ NKA + +GFG+V + E+ KA
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 181 FSGYELDGRVLTVNKATPKEAR 202
+G L GRVL V+ P E +
Sbjct: 93 MNGKILHGRVLYVDMDPPNEQK 114
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L +S +L E F ++GNV A IV+++ R +GFG+VT + E + A +
Sbjct: 34 IFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGM 93
Query: 283 DGQSLDGRTIRVSV 296
+G+ L GR + V +
Sbjct: 94 NGKILHGRVLYVDM 107
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ +SE + FE+ G + A VI +K T +S+G+GFV E +A
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTF 210
S +DGR N A+ RP PP ++
Sbjct: 90 PSP-VIDGRRANCNLAS--HGRPRGPPISY 116
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ +SE + FE+ G + A VI +K T +S+G+GFV E +A
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTF 210
S +DGR N A+ RP PP ++
Sbjct: 90 PSP-VIDGRRANCNLAS--HGRPRGPPISY 116
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADING----- 277
+++G + ++ L + F +G V +A+I+ DRETGR RGFGFVT ++ + +
Sbjct: 36 LFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTM 91
Query: 278 --AIAALDGQSLDGRTIRVSVAEGRSG 302
AI ++ Q L GR +RV+ A +SG
Sbjct: 92 SLAIKSMKNQDLYGRKVRVNYATEKSG 118
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YV L + L F+ G + + +VMD+ R RGF F+ ++E + AI +
Sbjct: 97 LYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEGM 156
Query: 283 DGQSLDGRTIRVSVAEGRSGGR 304
G+ LDGR I V VA+ RS R
Sbjct: 157 HGKFLDGRVIFVEVAKPRSELR 178
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++V L + E+L F+ G + ++ +K N+ RGF F+ +T E+ +KA+
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 181 FSGYELDGRVLTVNKATPK 199
G LDGRV+ V A P+
Sbjct: 156 MHGKFLDGRVIFVEVAKPR 174
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 120 LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALN 179
K+FVG L + + L+ F G V A+VI ++ + +S+G+GFV ++ ++ EKA+
Sbjct: 32 FKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAIT 91
Query: 180 KFSGYELDGRVLTVNKATPKEAR 202
+ + L+GRV+ V+ A P R
Sbjct: 92 EMNEKALNGRVVFVDYAKPDTKR 114
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L + L + F +G V A+++ DR + +S+G+GFVT +S+ + AI +
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 283 DGQSLDGRTIRVSVAE 298
+ ++L+GR + V A+
Sbjct: 94 NEKALNGRVVFVDYAK 109
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 19/191 (9%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAG----SVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
++F+GN+P ++L + + G +VE + + N + N RG+ F+ + E
Sbjct: 431 RLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNISNN--RGYAFIDYHNNQCAEY 488
Query: 177 ALNKFSG--YELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
+ K + ++L TVN A PK A VYV NLP +V
Sbjct: 489 SRQKMTSPSFKLGDNFPTVNWAEPKNA-----------DSSASSQVKEVYVKNLPKNVTK 537
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
+L+++F HG + + + GFV + ++ A+ + LDG+ +
Sbjct: 538 EQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKALKNTEKYVLDGQILEC 597
Query: 295 SVAEGRSGGRS 305
S+A+ ++ ++
Sbjct: 598 SLAKQQADPKA 608
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 25/171 (14%)
Query: 99 EDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATN 158
+D DE + E+++ P +++VG +P D ++E+L E G V + K +
Sbjct: 331 DDDDEKKKHAELLSL--PHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDAS 388
Query: 159 QSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXX 218
++RGF FV + E KA+ + + E + +K+ K
Sbjct: 389 ENRGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAK------------------- 429
Query: 219 XXXXVYVGNLPWSVDTARLEEIFREHG-NVENARIVMD-RETGRSRGFGFV 267
+++GN+P S L+++ + G V ++ D + +RG+ F+
Sbjct: 430 --SRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAFI 478
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 15/190 (7%)
Query: 121 KIFVGNLP--WDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
++F+G++P W VE + G + + ++++++RGF F+ E +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 179 NKFSG--YELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
K S ++LD V+ A P+ + VYV NLP ++ R
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNS-----------ESSSSSQVKAVYVKNLPENITQNR 287
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
L+E+F HG + + + +GFV + + A+ + ++G+T+ S+
Sbjct: 288 LKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSL 347
Query: 297 AEGRSGGRSS 306
A+ ++ +SS
Sbjct: 348 AKPQADQKSS 357
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 15/190 (7%)
Query: 121 KIFVGNLP--WDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
++F+G++P W VE + G + + ++++++RGF F+ E +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 179 NKFSG--YELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
K S ++LD V+ A P+ + VYV NLP ++ R
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNS-----------ESSSSSQVKAVYVKNLPENITQNR 287
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
L+E+F HG + + + +GFV + + A+ + ++G+T+ S+
Sbjct: 288 LKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSL 347
Query: 297 AEGRSGGRSS 306
A+ ++ +SS
Sbjct: 348 AKPQADQKSS 357
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 15/190 (7%)
Query: 121 KIFVGNLP--WDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
++F+G++P W VE + G + + ++++++RGF F+ E +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 179 NKFSG--YELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
K S ++LD V+ A P+ + VYV NLP ++ R
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNS-----------ESSSSSQVKAVYVKNLPENITQNR 287
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
L+E+F HG + + + +GFV + + A+ + ++G+T+ S+
Sbjct: 288 LKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSL 347
Query: 297 AEGRSGGRSS 306
A+ ++ +SS
Sbjct: 348 AKPQADQKSS 357
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 15/190 (7%)
Query: 121 KIFVGNLP--WDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
++F+G++P W VE + G + + ++++++RGF F+ E +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 179 NKFSG--YELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
K S ++LD V+ A P+ + VYV NLP ++ R
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNS-----------ESSSSSQVKAVYVKNLPENITQNR 287
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
L+E+F HG + + + +GFV + + A+ + ++G+T+ S+
Sbjct: 288 LKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSL 347
Query: 297 AEGRSGGRSS 306
A+ ++ +SS
Sbjct: 348 AKPQADQKSS 357
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD S L F + G +E + + +K + +S+G+GF++ AL K
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNAL-K 186
Query: 181 FSGYELDGRVLTVNKAT---PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
++ R+ A+ ++ +Y+ N+ +D +L
Sbjct: 187 EPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKL 246
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
F G +E + +D+ TG+ +GF FV S+E+
Sbjct: 247 FGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAES 283
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 25/172 (14%)
Query: 98 NEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKAT 157
N D DE + E+++ P +++VG +P D +SE+L E G V ++ K
Sbjct: 90 NLDDDEKKKHAELLSL--PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDA 147
Query: 158 NQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXX 217
++++GF FV E KA+ + + E GR + + + K
Sbjct: 148 SENKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKN----------------- 190
Query: 218 XXXXXVYVGNLPWSVDTARLEEIFREHG-NVENARIVMD-RETGRSRGFGFV 267
+++GN+P S L+++ + G V +V D + +RGF F+
Sbjct: 191 ----RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFI 238
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 19/184 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAG----SVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
++F+GN+P ++L + + G +VE + + N + N RGF F+ + E
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNN--RGFAFIDYHNNQCAEY 248
Query: 177 ALNKF--SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
K ++L TV+ A PK + VYV NLP +V
Sbjct: 249 GRQKMMSPSFKLGDNSPTVSWADPKNS-----------DSSASSQVKAVYVKNLPKNVTQ 297
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
+L+++F HG + + + GFV + ++ A+ + LDG+ +
Sbjct: 298 EQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLEC 357
Query: 295 SVAE 298
S+A+
Sbjct: 358 SLAK 361
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 25/172 (14%)
Query: 98 NEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKAT 157
N D DE + E+++ P +++VG +P D +SE+L E G V ++ K
Sbjct: 90 NLDDDEKKKHAELLSL--PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDA 147
Query: 158 NQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXX 217
++++GF FV E KA+ + + E GR + + + K
Sbjct: 148 SENKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKN----------------- 190
Query: 218 XXXXXVYVGNLPWSVDTARLEEIFREHG-NVENARIVMD-RETGRSRGFGFV 267
+++GN+P S L+++ + G V +V D + +RGF F+
Sbjct: 191 ----RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFI 238
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 19/184 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAG----SVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
++F+GN+P ++L + + G +VE + + N + N RGF F+ + E
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNN--RGFAFIDYHNNQCAEY 248
Query: 177 ALNKF--SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
K ++L TV+ A PK + VYV NLP +V
Sbjct: 249 GRQKMMSPSFKLGDNSPTVSWADPKNS-----------DSSASSQVKAVYVKNLPKNVTQ 297
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
+L+++F HG + + + GFV + ++ A+ + LDG+ +
Sbjct: 298 EQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLEC 357
Query: 295 SVAE 298
S+A+
Sbjct: 358 SLAK 361
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 25/172 (14%)
Query: 98 NEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKAT 157
N D DE + E+++ P +++VG +P D +SE+L E G V ++ K
Sbjct: 90 NLDDDEKKKHAELLSL--PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDA 147
Query: 158 NQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXX 217
++++GF FV E KA+ + + E GR + + + K
Sbjct: 148 SENKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKN----------------- 190
Query: 218 XXXXXVYVGNLPWSVDTARLEEIFREHG-NVENARIVMD-RETGRSRGFGFV 267
+++GN+P S L+++ + G V +V D + +RGF F+
Sbjct: 191 ----RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFI 238
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 19/184 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAG----SVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
++F+GN+P ++L + + G +VE + + N + N RGF F+ + E
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNN--RGFAFIDYHNNQCAEY 248
Query: 177 ALNKF--SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
K ++L TV+ A PK + VYV NLP +V
Sbjct: 249 GRQKMMSPSFKLGDNSPTVSWADPKNS-----------DSSASSQVKAVYVKNLPKNVTQ 297
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
+L+++F HG + + + GFV + ++ A+ + LDG+ +
Sbjct: 298 EQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLEC 357
Query: 295 SVAE 298
S+A+
Sbjct: 358 SLAK 361
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 25/172 (14%)
Query: 98 NEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKAT 157
N D DE + E+++ P +++VG +P D +SE+L E G V ++ K
Sbjct: 90 NLDDDEKKKHAELLSL--PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDA 147
Query: 158 NQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXX 217
++++GF FV E KA+ + + E GR + + + K
Sbjct: 148 SENKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKN----------------- 190
Query: 218 XXXXXVYVGNLPWSVDTARLEEIFREHG-NVENARIVMD-RETGRSRGFGFV 267
+++GN+P S L+++ + G V +V D + +RGF F+
Sbjct: 191 ----RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFI 238
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD S L F + G +E + + +K + +S+G+GF++ AL K
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNAL-K 186
Query: 181 FSGYELDGRVLTVNKAT---PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
++ R+ A+ ++ +Y+ N+ +D +L
Sbjct: 187 EPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKL 246
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
F G +E + +D+ TG+ +GF FV S+E+
Sbjct: 247 FGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAES 283
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD S L F + G +E + + +K + +S+G+GF++ AL K
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNAL-K 186
Query: 181 FSGYELDGRVLTVNKAT---PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
++ R+ A+ ++ +Y+ N+ +D +L
Sbjct: 187 EPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKL 246
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
F G +E + +D+ TG+ +GF FV S+E+
Sbjct: 247 FGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAES 283
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD S L F + G +E + + +K + +S+G+GF++ AL K
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNAL-K 186
Query: 181 FSGYELDGRVLTVNKAT---PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
++ R+ A+ ++ +Y+ N+ +D +L
Sbjct: 187 EPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKL 246
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
F G +E + +D+ TG+ +GF FV S+E+
Sbjct: 247 FGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAES 283
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD S L F + G +E + + +K + +S+G+GF++ AL K
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNAL-K 186
Query: 181 FSGYELDGRVLTVNKAT---PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
++ R+ A+ ++ +Y+ N+ +D +L
Sbjct: 187 EPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKL 246
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
F G +E + +D+ TG+ +GF FV S+E+
Sbjct: 247 FGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAES 283
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L T L E F++ G V +AR+V DR +G S+GFGFV ++ D I +
Sbjct: 53 LFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGM 112
Query: 283 DGQSLDGRTIRVSVAEGR 300
DG+ L+G I A R
Sbjct: 113 DGKFLEGWVIFAEYARPR 130
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 114 AEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAED 173
AEPS +L FV L +E L F++ G V A V+ ++ + S+GFGFV +T ED
Sbjct: 47 AEPSTNL--FVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLED 104
Query: 174 LEKALNKFSGYELDGRVLTVNKATPKEARPERPP 207
K + G L+G V+ + ARP PP
Sbjct: 105 AAKGIEGMDGKFLEGWVIFA-----EYARPRPPP 133
>Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49069532-49073325 | 20130731
Length = 345
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
VYV NLP S DT L +F HG V + + + ETG S+G +VTM S A+AAL
Sbjct: 45 VYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNALAAL 104
Query: 283 DGQSLDGRTIRVSVA 297
DG + GR + V +
Sbjct: 105 DGSDVGGREMLVKFS 119
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ + E + M FE+ G + A VI +K T +S+G+GFV E +A
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQN 85
Query: 181 FSGYELDGRVLTVNKAT 197
S +DGR N A+
Sbjct: 86 PSP-VIDGRRANCNIAS 101
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L W + F + G + A ++ D+ TGRS+G+GFVT D AI A
Sbjct: 27 LFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFK---DPEAAIRAC 83
Query: 283 DGQS--LDGRTIRVSVA 297
S +DGR ++A
Sbjct: 84 QNPSPVIDGRRANCNIA 100
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ + E + M FE+ G + A VI +K T +S+G+GFV E +A
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQN 85
Query: 181 FSGYELDGRVLTVNKAT 197
S +DGR N A+
Sbjct: 86 PSP-VIDGRRANCNIAS 101
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L W + F + G + A ++ D+ TGRS+G+GFVT D AI A
Sbjct: 27 LFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFK---DPEAAIRAC 83
Query: 283 DGQS--LDGRTIRVSVA 297
S +DGR ++A
Sbjct: 84 QNPSPVIDGRRANCNIA 100
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L W L+ F + G++ A ++ DR TG+S+G+GFVT D N AI A
Sbjct: 28 IFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFK---DPNSAILAC 84
Query: 283 DGQS--LDGRTIRVSVA 297
+ +DGR ++A
Sbjct: 85 QNPNPMIDGRRANCNLA 101
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L W L+ F + G++ A ++ DR TG+S+G+GFVT D N AI A
Sbjct: 28 IFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFK---DPNSAILAC 84
Query: 283 DGQS--LDGRTIRVSVA 297
+ +DGR ++A
Sbjct: 85 QNPNPMIDGRRANCNLA 101
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L W L+ F + G++ A ++ DR TG+S+G+GFVT D N AI A
Sbjct: 28 IFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFK---DPNSAILAC 84
Query: 283 DGQS--LDGRTIRVSVA 297
+ +DGR ++A
Sbjct: 85 QNPNPMIDGRRANCNLA 101
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L W L+ F + G++ A ++ DR TG+S+G+GFVT D N AI A
Sbjct: 28 IFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFK---DPNSAILAC 84
Query: 283 DGQS--LDGRTIRVSVA 297
+ +DGR ++A
Sbjct: 85 QNPNPMIDGRRANCNLA 101
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L + +LE +F G + A ++ D+ T R +GFGFV+ SE + A AL
Sbjct: 9 LFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKAL 68
Query: 283 DGQSLDGRTIRVSVAE 298
+G+ +DGR I V A+
Sbjct: 69 NGRIVDGRLIFVEHAK 84
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FV L + + L LF G + A +I ++ T + +GFGFV + + EKA
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 181 FSGYELDGRVLTVNKATPKEA 201
+G +DGR++ V A PK++
Sbjct: 68 LNGRIVDGRLIFVEHAKPKDS 88
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+ V NL +SV+ +E+IF++ G V + R DRE GR RGFG+V + A+ L
Sbjct: 164 ICVRNLSYSVERTDMEDIFKDCGEVVDVRFNTDRE-GRFRGFGYVEFGTAEAAKKAL-KL 221
Query: 283 DGQSLDGRTIRVSVAEGRSG 302
D L R +RV +A +SG
Sbjct: 222 DSTELLNRRMRVDIAIEKSG 241
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
SE ++FV NLP+ E L F + GSV A ++ +K T +S+G ++ S E +
Sbjct: 326 SEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAAR 385
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPE 204
AL + GR+L V A P+ + E
Sbjct: 386 ALEESDNSIFQGRLLHVMPAIPRHSNNE 413
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 15/187 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAG------SVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
+FV NL + E L F E SV+ + + N N S GFGFV + E
Sbjct: 643 LFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKN-GKNVSMGFGFVEFDSTETAT 701
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
N G LDG L + K + + + V N+ +
Sbjct: 702 SVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKV-----EKDKSSTKLLVKNVAFEATEK 756
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
L ++F G +++ R+ M + G RGF FV ++ + A+ AL L GR + +
Sbjct: 757 DLRQLFSPFGQIKSLRLPM--KFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIE 814
Query: 296 VA-EGRS 301
A EG S
Sbjct: 815 RAKEGES 821
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V NLP+S LEE F + G+V A +V+D++T RS+G ++ S+ A+
Sbjct: 331 LFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEES 390
Query: 283 DGQSLDGRTIRV 294
D GR + V
Sbjct: 391 DNSIFQGRLLHV 402
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V+V L + L E F++ G V+ R+V DR +G S+GFG+V ++ D I +
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGM 105
Query: 283 DGQSLDG 289
DG+ L+G
Sbjct: 106 DGKFLEG 112
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VG L +V L F G ++ + ++AT + R FGFV ED A++
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 182 SGYELDGRVLTVNKATPKEAR 202
G EL GRVLTVN A P++ +
Sbjct: 72 DGAELYGRVLTVNYALPEKIK 92
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVG L V+ + L F G++++ + +D+ T + R FGFVT D + A+ +
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 283 DGQSLDGRTIRVSVA--EGRSGGRSSF 307
DG L GR + V+ A E GG +
Sbjct: 72 DGAELYGRVLTVNYALPEKIKGGEQGW 98
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V+VG L W T + F + G++ A I+ D+ TG+S+G+GFVT A A
Sbjct: 18 VFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADP 77
Query: 283 DGQSLDGRTIRVSVA 297
+ +DGR ++A
Sbjct: 78 N-PVIDGRRANCNIA 91
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ ++ + FE+ G + A +I +K T +S+G+GFV E +A
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 181 FSGYELDGRVLTVNKAT 197
+ +DGR N A+
Sbjct: 77 PNP-VIDGRRANCNIAS 92
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+ L E L F G + A+VI ++ + +S+GF FV ST E+ EKA
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 181 FSGYELDGRVLTVNKATPKEAR 202
+ LDG V+ V+ A P+E R
Sbjct: 96 MNAKFLDGWVIFVDPAKPREPR 117
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L + +R++ F +G ++ R+V D E+ + RG+ F+ D+ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 283 DGQSLDGRTIRVSVAEGRS 301
DG+ ++GR + V V GR+
Sbjct: 197 DGRKIEGRRVLVDVERGRT 215
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L + +R++ F +G ++ R+V D E+ + RG+ F+ D+ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 283 DGQSLDGRTIRVSVAEGRS 301
DG+ ++GR + V V GR+
Sbjct: 197 DGRKIEGRRVLVDVERGRT 215
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L + +R++ F +G ++ R+V D E+ + RG+ F+ D+ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 283 DGQSLDGRTIRVSVAEGRS 301
DG+ ++GR + V V GR+
Sbjct: 197 DGRKIEGRRVLVDVERGRT 215
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L + +R++ F +G ++ R+V D E+ + RG+ F+ D+ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 283 DGQSLDGRTIRVSVAEGRS 301
DG+ ++GR + V V GR+
Sbjct: 197 DGRKIEGRRVLVDVERGRT 215
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 120 LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALN 179
L +FV NLP+ + L F E G V ++ K + Q RGFG+V + +D +A+
Sbjct: 21 LTLFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDANQAIE 80
Query: 180 KFSGYELDGRVLTVNKATPKEARPERPPR 208
+ + R + V A P RPPR
Sbjct: 81 LKNSSLVGDRKIVVKHAIP------RPPR 103
>Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr8:20148291-20144393 | 20130731
Length = 303
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
VYVGNLP + +E++F ++G++ + + + R G+ FV D AI
Sbjct: 9 VYVGNLPGDIREREVEDLFMKYGHITHIDLKV---PPRPPGYAFVEFEDVQDAEDAIRGR 65
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
DG DG +RV A G G SS
Sbjct: 66 DGYDFDGHRLRVEAAHGGRGNSSS 89
>Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:44331530-44321717 | 20130731
Length = 401
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
VYVGNLP + +E++F ++G++ + + + R G+ FV D AI
Sbjct: 110 VYVGNLPGDIREREVEDLFMKYGHITHIDLKV---PPRPPGYAFVEFEDVQDAEDAIRGR 166
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
DG DG +RV A G G SS
Sbjct: 167 DGYDFDGHRLRVEAAHGGRGNSSS 190
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 98 NEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKAT 157
+E+ DE E + ++ +IFVG L D E+L +F+ G V + N +T
Sbjct: 396 DEEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSST 455
Query: 158 NQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXX 217
+++RG+ V + E +KAL++ + G+ +P E
Sbjct: 456 SKNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGT---SPSE----------------- 495
Query: 218 XXXXXVYVGNLPWSVDTARLEEIFREHG--NVENARIVMD-RETGRSRGFGFVTMSSEAD 274
+++GN+ + +++ +++G VEN +V D + G SRGF F+ S AD
Sbjct: 496 -DNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHAD 554
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 98 NEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKAT 157
+E+ DE E + ++ +IFVG L D E+L +F+ G V + N +T
Sbjct: 396 DEEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSST 455
Query: 158 NQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXX 217
+++RG+ V + E +KAL++ + G+ +P E
Sbjct: 456 SKNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGT---SPSE----------------- 495
Query: 218 XXXXXVYVGNLPWSVDTARLEEIFREHG--NVENARIVMD-RETGRSRGFGFVTMSSEAD 274
+++GN+ + +++ +++G VEN +V D + G SRGF F+ S AD
Sbjct: 496 -DNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHAD 554
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 47/78 (60%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++ G+L V+ L + F + AR+V D+ TG+++G+GF++ ++ AD+ A+ +
Sbjct: 134 LFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKEM 193
Query: 283 DGQSLDGRTIRVSVAEGR 300
+G+ + R I++ ++ R
Sbjct: 194 NGKYVGNRPIKLRKSKWR 211
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%)
Query: 105 EGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFG 164
+ E+ + + P +D ++F G+L +V + L+ F S A V+ +K T +++G+G
Sbjct: 117 QAWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYG 176
Query: 165 FVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKE 200
F+ + DL AL + +G + R + + K+ +E
Sbjct: 177 FISFANPADLAAALKEMNGKYVGNRPIKLRKSKWRE 212
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 98 NEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKAT 157
+E+ DE E + ++ +IFVG L D E+L +F+ G V + N +T
Sbjct: 396 DEEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSST 455
Query: 158 NQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXX 217
+++RG+ V + E +KAL++ + G+ +P E
Sbjct: 456 SKNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGT---SPSE----------------- 495
Query: 218 XXXXXVYVGNLPWSVDTARLEEIFREHG--NVENARIVMD-RETGRSRGFGFVTMSSEAD 274
+++GN+ + +++ +++G VEN +V D + G SRGF F+ S AD
Sbjct: 496 -DNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHAD 554
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 113 SAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAE 172
S+ PS +L +V NL DV +L LF + G+++ + + +R + FV +
Sbjct: 22 SSTPSNNL--YVANLSPDVTDSDLMDLFVQYGALD------SVTSYSARNYAFVFFKRID 73
Query: 173 DLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSV 232
D + A N G+ G L + A RP +T ++VG + +V
Sbjct: 74 DAKAAKNALQGFNFRGNSLRIEFA--------RPAKT----------CKQLWVGGISPAV 115
Query: 233 DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTI 292
LE FR+ G VE+ + DR T F D A+ ++G+ + G I
Sbjct: 116 TKEDLEADFRKFGKVEDFKFFRDRNTACVEFFNL------DDAIQAMKIMNGKHIGGENI 169
Query: 293 RV 294
RV
Sbjct: 170 RV 171
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 113 SAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAE 172
S+ PS +L +V NL DV +L LF + G+++ + + +R + FV +
Sbjct: 22 SSTPSNNL--YVANLSPDVTDSDLMDLFVQYGALD------SVTSYSARNYAFVFFKRID 73
Query: 173 DLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSV 232
D + A N G+ G L + A RP +T ++VG + +V
Sbjct: 74 DAKAAKNALQGFNFRGNSLRIEFA--------RPAKT----------CKQLWVGGISPAV 115
Query: 233 DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTI 292
LE FR+ G VE+ + DR T F D A+ ++G+ + G I
Sbjct: 116 TKEDLEADFRKFGKVEDFKFFRDRNTACVEFFNL------DDAIQAMKIMNGKHIGGENI 169
Query: 293 RV 294
RV
Sbjct: 170 RV 171
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ + E + FE+ G + A VI +KAT +S+G+GFV + +A
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 181 FSGYELDGRVLTVNKAT 197
+ +DGR N A+
Sbjct: 77 -AAPIIDGRRANCNLAS 92
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ + E + FE+ G + A VI +KAT +S+G+GFV + +A
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 181 FSGYELDGRVLTVNKAT 197
+ +DGR N A+
Sbjct: 77 -AAPIIDGRRANCNLAS 92
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V+VG L W L E F ++G++ A I+ D+ TGRS+G+GFVT D + A A
Sbjct: 20 VFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFK---DADSAKKAC 76
Query: 283 DGQS--LDGRTIRVSVA 297
+ + ++GR ++A
Sbjct: 77 EEPTVIINGRRANCNIA 93
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
K+FVG L W+ + L FE+ G + A +I +K T +S+G+GFV A+ +KA
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKAC 76
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V+VG L W L E F ++G++ A I+ D+ TGRS+G+GFVT D + A A
Sbjct: 20 VFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFK---DADSAKKAC 76
Query: 283 DGQS--LDGRTIRVSVA 297
+ + ++GR ++A
Sbjct: 77 EEPTVIINGRRANCNIA 93
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
K+FVG L W+ + L FE+ G + A +I +K T +S+G+GFV A+ +KA
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKAC 76
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V L + L F G V ++ + T +SRGFGFV M T E+ ++ +
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 182 SGYELDGRVLTVNKA 196
+ L+GRV+TV KA
Sbjct: 107 NRSVLEGRVITVEKA 121
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
SE ++FV NLP+ E L F + GSV ++ +K T +S+G F+ S E +
Sbjct: 896 SEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAAR 955
Query: 177 ALNKFSGYELDGRVLTVNKATP 198
AL + GR+L V A P
Sbjct: 956 ALEESDNSIFQGRLLHVIAAIP 977
>Medtr1g048080.1 | pentatricopeptide (PPR) repeat protein | HC |
chr1:18204785-18193518 | 20130731
Length = 952
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIY-NKATNQSRGFGFVIMS--TAEDLEKA 177
KIF+GNLP V+ + ++ F + G + +I + +++ GFGFVI TAE+
Sbjct: 160 KIFIGNLPGWVKKQEVSEFFRQFGPINSVILIRGHNDVSRNAGFGFVIYEGETAENSAMK 219
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERPPR 208
+F G E G+VLTV K R +R R
Sbjct: 220 AVEFDGVEFHGKVLTVKLDDGKRWREKRSER 250