Miyakogusa Predicted Gene
- Lj4g3v1389240.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1389240.1 Non Characterized Hit- tr|I1K074|I1K074_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53699
PE,79.03,2e-18,AvrRpt-cleavage,Pathogenic type III effector avirulence
factor Avr cleavage
site,gene.Ljchr4_pseudomol_20120830.path1.gene4386.1
(73 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g104085.1 | RPM1-interacting protein 4 (RIN4) family prote... 102 1e-22
Medtr3g086160.1 | RPM1-interacting protein 4 (RIN4) family prote... 77 2e-15
Medtr5g096030.1 | RPM1-interacting protein 4 (RIN4) family prote... 77 4e-15
Medtr8g089560.1 | RPM1-interacting protein 4 (RIN4) family prote... 76 8e-15
Medtr8g012960.2 | RPM1 interacting protein 4 transcript protein ... 57 3e-09
Medtr8g012960.1 | RPM1 interacting protein 4 transcript protein ... 57 3e-09
Medtr7g056147.3 | RPM1 interacting protein 4 transcript protein ... 53 6e-08
Medtr7g056147.2 | RPM1 interacting protein 4 transcript protein ... 53 7e-08
Medtr7g056147.1 | RPM1 interacting protein 4 transcript protein ... 53 7e-08
Medtr2g025170.1 | RPM1-interacting protein 4 (RIN4) family prote... 49 1e-06
Medtr5g098260.1 | RPM1-interacting protein 4 (RIN4) family prote... 48 2e-06
>Medtr4g104085.1 | RPM1-interacting protein 4 (RIN4) family
protein | HC | chr4:43086977-43089894 | 20130731
Length = 108
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 1 MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSATNMATPRKSDSESKNA 60
+ QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT++S NMATPR +D KN
Sbjct: 15 LKEQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTS-INMATPRTADPVFKND 73
Query: 61 NYAQFP 66
N+ ++P
Sbjct: 74 NHPKYP 79
>Medtr3g086160.1 | RPM1-interacting protein 4 (RIN4) family
protein | HC | chr3:38988227-38988508 | 20130731
Length = 93
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 3 SQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSATNMATPRKSDSESKNAN 61
S+ G+PLPKFGEWDVN+P+SAEGFTVIFNKARD+KK +S++ + R+ DS + N
Sbjct: 6 SEQDGKPLPKFGEWDVNDPSSAEGFTVIFNKARDDKKIASASGRFPSQRRYDSRTGRTN 64
>Medtr5g096030.1 | RPM1-interacting protein 4 (RIN4) family
protein | HC | chr5:41984600-41987102 | 20130731
Length = 76
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/38 (89%), Positives = 36/38 (94%)
Query: 5 DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSS 42
DKGRPLPKFGEWDVN+PASAEG+TVIFNKARDEKKT
Sbjct: 2 DKGRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGG 39
>Medtr8g089560.1 | RPM1-interacting protein 4 (RIN4) family
protein | HC | chr8:37224822-37225345 | 20130731
Length = 75
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 1 MAS-QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSATNMATPRKSDS 55
MAS ++ GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT + ++ S
Sbjct: 1 MASYENNGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGGGSGRVNSQRLRS 56
>Medtr8g012960.2 | RPM1 interacting protein 4 transcript protein |
HC | chr8:3947090-3941471 | 20130731
Length = 260
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 5 DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKK 39
DKG +PKFG+WDV+NPASA+G+T IFNK R+E++
Sbjct: 191 DKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQ 225
>Medtr8g012960.1 | RPM1 interacting protein 4 transcript protein |
HC | chr8:3947114-3943191 | 20130731
Length = 260
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 5 DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKK 39
DKG +PKFG+WDV+NPASA+G+T IFNK R+E++
Sbjct: 191 DKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQ 225
>Medtr7g056147.3 | RPM1 interacting protein 4 transcript protein |
HC | chr7:19567292-19571440 | 20130731
Length = 211
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 5 DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSAT 45
DK +PKFGEWD ++PASA+G+T IFNK R+EK ++ T
Sbjct: 141 DKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNT 181
>Medtr7g056147.2 | RPM1 interacting protein 4 transcript protein |
HC | chr7:19567302-19571423 | 20130731
Length = 249
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 5 DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSAT 45
DK +PKFGEWD ++PASA+G+T IFNK R+EK ++ T
Sbjct: 179 DKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNT 219
>Medtr7g056147.1 | RPM1 interacting protein 4 transcript protein |
HC | chr7:19567292-19571440 | 20130731
Length = 248
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 5 DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSAT 45
DK +PKFGEWD ++PASA+G+T IFNK R+EK ++ T
Sbjct: 178 DKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNT 218
>Medtr2g025170.1 | RPM1-interacting protein 4 (RIN4) family protein
| HC | chr2:8954695-8955548 | 20130731
Length = 192
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 10 LPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSATN--MATPRKSDSESKNAN 61
+P+FG+WDV +P S EG+TV+F+K ++EK+ SS + TP + S KN +
Sbjct: 119 IPEFGKWDVTDPKSGEGYTVMFSKIKEEKQIMSSRISGLRTTPHNNGSNIKNQH 172
>Medtr5g098260.1 | RPM1-interacting protein 4 (RIN4) family
protein | HC | chr5:43039189-43038020 | 20130731
Length = 98
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 25/29 (86%)
Query: 11 PKFGEWDVNNPASAEGFTVIFNKARDEKK 39
PKFGEWD N+ +SA G+TVIFNK ++EK+
Sbjct: 4 PKFGEWDANDSSSANGYTVIFNKIKEEKR 32