Miyakogusa Predicted Gene

Lj4g3v1389230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1389230.1 tr|Q42061|Q42061_ARATH Ribosomal protein PO
(Fragment) OS=Arabidopsis thaliana PE=2
SV=1,62.32,1e-17,Ribosomal_L10,Ribosomal protein L10/acidic P0; 60S
ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL,CUFF.49161.1
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g022400.1 | ribosomal protein L10 family protein | HC | ch...   336   9e-93
Medtr7g112750.1 | ribosomal protein L10 family protein | HC | ch...   271   2e-73
Medtr3g108280.1 | 60S acidic ribosomal protein P0-1 | HC | chr3:...   157   5e-39
Medtr5g082180.1 | 60S acidic ribosomal protein P0-1 | HC | chr5:...   157   7e-39

>Medtr7g022400.1 | ribosomal protein L10 family protein | HC |
           chr7:7219598-7222153 | 20130731
          Length = 188

 Score =  336 bits (861), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 161/188 (85%), Positives = 177/188 (94%), Gaps = 1/188 (0%)

Query: 1   MAGKVSKAAYDSKMCKLLREYSQVLVVSADNVGSNQLQGIRRALHGDSVVVMGKNSLMKR 60
           MAGKV+KAAYD+KM KLLREY+QVLVVS+DNVGSNQLQGIRRALH DSVVVMGKNSLMKR
Sbjct: 1   MAGKVAKAAYDAKMGKLLREYTQVLVVSSDNVGSNQLQGIRRALHEDSVVVMGKNSLMKR 60

Query: 61  SIIDDAEKTGNK-AFLNLVPLLVGNVALIFTKGDLREVSEQVAKYKVVDPILMCPKYMTY 119
           SII  AEKTGN  AFLNLVPLLVGNVALIFTKGDLR+VSE++AK KVV+PILMCPKYM+Y
Sbjct: 61  SIIQAAEKTGNSHAFLNLVPLLVGNVALIFTKGDLRDVSERIAKLKVVNPILMCPKYMSY 120

Query: 120 DSYRTCSYLQSGQLPLGLTCCNQQSAQTSEPFLVCSKFLPHQHCHLMRSRQFLMTSIWAP 179
           DSY+TCSY+QSGQLPLGLTCCNQQS+Q SEPFLV SKF P QHC++MRSRQFL+TSIW+P
Sbjct: 121 DSYKTCSYMQSGQLPLGLTCCNQQSSQASEPFLVSSKFSPPQHCYMMRSRQFLLTSIWSP 180

Query: 180 FLLLAGNL 187
           FLLLAGNL
Sbjct: 181 FLLLAGNL 188


>Medtr7g112750.1 | ribosomal protein L10 family protein | HC |
           chr7:46395958-46397028 | 20130731
          Length = 203

 Score =  271 bits (694), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/187 (72%), Positives = 152/187 (81%), Gaps = 19/187 (10%)

Query: 1   MAGKVSKAAYDSKMCKLLREYSQVLVVSADNVGSNQLQGIRRALHGDSVVVMGKNSLMKR 60
           MAGKV+K+AY +KM KLLREY+QVLVVS+DNVGSNQLQGIRRALH DSVVVMGKNSLMK 
Sbjct: 1   MAGKVAKSAYYAKMAKLLREYTQVLVVSSDNVGSNQLQGIRRALHEDSVVVMGKNSLMKH 60

Query: 61  SIIDDAEKTGNK-AFLNLVPLLVGNVALIFTKGDLREVSEQVAKYKVVDPILMCPKYMTY 119
           SI   AEKTGN  AFLNL PLLVGN                    KVV+PILMCPKYM+Y
Sbjct: 61  SINQAAEKTGNNDAFLNLGPLLVGNFL------------------KVVNPILMCPKYMSY 102

Query: 120 DSYRTCSYLQSGQLPLGLTCCNQQSAQTSEPFLVCSKFLPHQHCHLMRSRQFLMTSIWAP 179
           DSY+TCS++QSGQLPLGLTCCNQQS+Q SEPFL+CSKF P QHC++MRSRQFL+TSI +P
Sbjct: 103 DSYKTCSFMQSGQLPLGLTCCNQQSSQASEPFLICSKFTPPQHCYMMRSRQFLLTSILSP 162

Query: 180 FLLLAGN 186
           FLLLA N
Sbjct: 163 FLLLAAN 169


>Medtr3g108280.1 | 60S acidic ribosomal protein P0-1 | HC |
           chr3:50021185-50023906 | 20130731
          Length = 323

 Score =  157 bits (397), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 114/170 (67%), Gaps = 18/170 (10%)

Query: 1   MAGKVSKAA----YDSKMCKLLREYSQVLVVSADNVGSNQLQGIRRALHGDSVVVMGKNS 56
           MA K +KA     YD+K+C+L+ EY+Q+LVV+ADNVGS QLQ IR+ L GDSVV+MGKN+
Sbjct: 1   MAVKPTKAEKKQNYDAKLCQLIDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNT 60

Query: 57  LMKRSIIDDAEKTGNKAFLNLVPLLVGNVALIFTKGDLREVSEQVAKYKVVDP------- 109
           +MKRS+   AEKTGN AFLNL+PLLVGNV LIFTKGDL+EVSE+VAKYKV  P       
Sbjct: 61  MMKRSVRMHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 110 ---ILMCPKYMTYDSYRTCSYLQSGQLPLGLTCCNQQSAQTSEPFLVCSK 156
              +++ P     D  +T S+ Q   +P   T  N+ + +   P  +  K
Sbjct: 121 PIDVVVPPGNTGLDPSQT-SFFQVLNIP---TKINKGTVEIITPVELIKK 166


>Medtr5g082180.1 | 60S acidic ribosomal protein P0-1 | HC |
           chr5:35301210-35298120 | 20130731
          Length = 323

 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 113/170 (66%), Gaps = 18/170 (10%)

Query: 1   MAGKVSKA----AYDSKMCKLLREYSQVLVVSADNVGSNQLQGIRRALHGDSVVVMGKNS 56
           MA K +KA    AYD K+C+LL E++Q+L+V+ADNVGS QLQ IR  L GDSVV+MGKN+
Sbjct: 1   MAPKPTKAEKKQAYDVKLCQLLDEFTQILIVNADNVGSKQLQNIRGGLRGDSVVLMGKNT 60

Query: 57  LMKRSIIDDAEKTGNKAFLNLVPLLVGNVALIFTKGDLREVSEQVAKYKVVDP------- 109
           +MKRS+   AEKTGN AFLNL+PLLVGNV LIFTKGDL+EVSE+VAKYKV  P       
Sbjct: 61  MMKRSVRMHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 110 ---ILMCPKYMTYDSYRTCSYLQSGQLPLGLTCCNQQSAQTSEPFLVCSK 156
              +++ P     D  +T S+ Q   +P   T  N+ + +   P  +  K
Sbjct: 121 PIDVVVPPGNTGLDPSQT-SFFQVLNIP---TKINKGTVEIITPVELIKK 166