Miyakogusa Predicted Gene

Lj4g3v1389190.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1389190.2 tr|J3SF18|J3SF18_CROAD Prefoldin subunit 6
OS=Crotalus adamanteus PE=2 SV=1,44.83,4e-19,Prefoldin_2,Prefoldin
beta-like; coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; PREFOLDIN
SUBUNIT 6,NUL,CUFF.49169.2
         (129 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g055650.1 | prefoldin | HC | chr5:22903827-22908443 | 2013...   239   4e-64
Medtr3g462870.1 | hypothetical protein | LC | chr3:25161249-2515...    55   1e-08

>Medtr5g055650.1 | prefoldin | HC | chr5:22903827-22908443 |
           20130731
          Length = 129

 Score =  239 bits (611), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/129 (93%), Positives = 127/129 (98%)

Query: 1   MSSSNIRDLQRELENKANDLSKLQKDIAKNHQVRKKYTVQLGENELVLKELDLLKQDANV 60
           MSSSNIRDLQRELENKANDL+KLQKDIAKNHQVRKKYT+QLGENELVLKELDLL +DANV
Sbjct: 1   MSSSNIRDLQRELENKANDLNKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLNEDANV 60

Query: 61  YKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKEAIMKVQQRIQ 120
           YKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKE IMK+QQ++Q
Sbjct: 61  YKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKETIMKLQQKMQ 120

Query: 121 SLQAGKGKA 129
           SLQAGKGKA
Sbjct: 121 SLQAGKGKA 129


>Medtr3g462870.1 | hypothetical protein | LC |
           chr3:25161249-25159410 | 20130731
          Length = 129

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 32/38 (84%)

Query: 92  KRLDATVQDLEEKQNSKKEAIMKVQQRIQSLQAGKGKA 129
           K L   VQ LEEKQNSKKE I+K+QQ++QSLQAGKGKA
Sbjct: 92  KFLILRVQVLEEKQNSKKETILKLQQKMQSLQAGKGKA 129