Miyakogusa Predicted Gene

Lj4g3v1388320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1388320.1 tr|G7JLF1|G7JLF1_MEDTR Chromatin remodeling
complex subunit OS=Medicago truncatula GN=MTR_4g103600 P,70.1,0,SWI
complex, BAF60b domains,SWIB domain; coiled-coil,NULL; SWIB,SWIB/MDM2
domain; SUBFAMILY NOT NAME,CUFF.49113.1
         (538 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g103600.1 | chromatin remodeling complex subunit | HC | ch...   716   0.0  
Medtr3g089140.1 | chromatin remodeling complex subunit | HC | ch...   565   e-161
Medtr6g023835.1 | chromatin remodeling complex subunit | HC | ch...   540   e-153
Medtr6g023835.2 | chromatin remodeling complex subunit | HC | ch...   540   e-153
Medtr6g023835.3 | chromatin remodeling complex subunit | HC | ch...   540   e-153

>Medtr4g103600.1 | chromatin remodeling complex subunit | HC |
           chr4:42821855-42817823 | 20130731
          Length = 528

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/525 (68%), Positives = 408/525 (77%), Gaps = 28/525 (5%)

Query: 15  FQLLTQSQPQIQGAVQFPGHFQLSQPQT--HLIAQQ-AQYAXXXXXXXXXXXXXXXXXXX 71
             LLTQS PQ+Q   QFPGHFQLSQPQ   H+I+QQ +Q+                    
Sbjct: 28  IHLLTQSHPQMQNPSQFPGHFQLSQPQPQPHVISQQQSQFVNPRSHPQTLQQHHQQHQQQ 87

Query: 72  XXXXXXXXXXXXXXXXXXXVGLLHNSGNTHVGTAAPGTASAKRANQKPPSRGPQGSPSAN 131
                                      N      A  T+S KR++ K  SR PQGSPS N
Sbjct: 88  Q-----------------------QQQNVASPATASTTSSVKRSHHKANSR-PQGSPSGN 123

Query: 132 QSSAFKTMELTPAPLRRKRSYPEKQIPERVAKLVPECAVYTRLRELEAQIDAALFRKKID 191
           Q+SAFKTMELTPAPLR+KR+ PE  IPE+VAK+VPE A+YTRL ELEAQIDAAL RKK+D
Sbjct: 124 QTSAFKTMELTPAPLRKKRTLPENLIPEKVAKIVPESAIYTRLIELEAQIDAALNRKKVD 183

Query: 192 VQEAVRNPTCVQKTMRVYVYNTFSNQNKMDSGKNDAEEPSWSLKITGRLLEDG-KDPVVA 250
           VQEAV+NPT V+KT+RVYVYNTFSNQ K        E PSWSL+ITGR+LE+G KDPVV 
Sbjct: 184 VQEAVKNPTSVRKTLRVYVYNTFSNQTKESGKVGGVELPSWSLRITGRILEEGGKDPVVG 243

Query: 251 GVSQRESPPCPKFSAFFKKITIYLDQGFYPDNHVIVWESGRSPNQRDGFEVKRKGDKEFT 310
           G+S+R S   PKFSAFFKKIT+YLDQGFYPD HVIVW+S RSP Q+DGFEVKRKGDKEFT
Sbjct: 244 GISKRGSIVYPKFSAFFKKITVYLDQGFYPDKHVIVWDSARSPVQQDGFEVKRKGDKEFT 303

Query: 311 AVIRLTMNYSPEKFMVSTQLSKVLGIEFDTRPRIIAALWHYVKSKKLQSPNDPSFFMCDA 370
           AVIRL +NYSPEKFMVST L+KVLGIEFDTRPRI+AALW+YVK +KLQSPNDPSFFMCDA
Sbjct: 304 AVIRLGVNYSPEKFMVSTPLAKVLGIEFDTRPRIMAALWNYVKFRKLQSPNDPSFFMCDA 363

Query: 371 PLQRVFGEEKMKFSMASQKISQHLSLPQPIHLEHKLKFSGTCPVGTACYDIQVDVPLPLE 430
            LQ+VFGEEKMKFSMASQKISQHLS PQ IHLEHK+K SG  P GT CYD+QVDVPL LE
Sbjct: 364 SLQKVFGEEKMKFSMASQKISQHLSQPQHIHLEHKIKLSGNSPAGTTCYDVQVDVPLSLE 423

Query: 431 KDMSAFLTSIESHKEIDNFDEVICSSIKKIQGHLRRRAFFLGFSQSPAEFINSLITSQSK 490
           KDMSAFLTS+E HKEID FDEVI +S+KKI  HL+RR+F LGFSQSPAEFIN+LI SQSK
Sbjct: 424 KDMSAFLTSMERHKEIDAFDEVISASVKKIHEHLKRRSFLLGFSQSPAEFINALIASQSK 483

Query: 491 DLKVVAGDASHSADNERRSEFYNQSWVEDAIIRYLSRKTARSDAP 535
           DLK+VAGDASH+A+NE+RSEFYN+ WVEDA+IRYLSRK+AR+DAP
Sbjct: 484 DLKLVAGDASHNAENEKRSEFYNKPWVEDAVIRYLSRKSARTDAP 528


>Medtr3g089140.1 | chromatin remodeling complex subunit | HC |
           chr3:33895286-33892496 | 20130731
          Length = 536

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/523 (56%), Positives = 367/523 (70%), Gaps = 31/523 (5%)

Query: 17  LLTQSQPQIQGAVQFPGHFQLSQPQTHLIA-QQAQYAXXXXXXXXXXXXXXXXXXXXXXX 75
           L+++S PQ     QF G FQ S+PQ H     QA YA                       
Sbjct: 36  LVSRSHPQ----TQFHGQFQFSEPQLHPQGFAQAHYAQLQSQAALASLQSSQTQP----- 86

Query: 76  XXXXXXXXXXXXXXXVGLLHNSGNTHVGTAAPGTASAKRAN-QKPPSRGPQGSPSANQSS 134
                          V  LHN+       + P T  +KRA  Q+   R P GS  ANQ+ 
Sbjct: 87  ---------------VTPLHNANTNTNVVSTPATGGSKRAGTQRNLLRTP-GSSGANQNV 130

Query: 135 AFKTMELTPAPLRRKRSYPEKQIPERVAKLVPECAVYTRLRELEAQIDAALFRKKIDVQE 194
             KTMELTPA  RR R  PEKQ+ E+VA ++PE A+YT+L + EAQ+DAAL ++K+ +QE
Sbjct: 131 PDKTMELTPASRRRMRELPEKQMLEKVATILPESALYTQLLDFEAQMDAALAKRKLGMQE 190

Query: 195 AVRNPTCVQKTMRVYVYNTFSNQNKMDSGKND-AEEPSWSLKITGRLLEDGKDPVVAGVS 253
           A+R+P  VQKT+RVYV+NTFS   K DS ++   EE SWSLKI GR+LEDG D +++G+ 
Sbjct: 191 AIRSPPHVQKTLRVYVFNTFSKHTKTDSEEDKTVEESSWSLKIIGRVLEDGND-LLSGIL 249

Query: 254 QRESPPCPKFSAFFKKITIYLDQGFYPDNHVIVWESGRSPNQRDGFEVKRKGDKEFTAVI 313
           QR SP   KFS FFKKITI LDQ  YP+NH+IVW+S  SP Q+DGFEVKRKGDKEFTAVI
Sbjct: 250 QRSSPSDTKFSDFFKKITICLDQNLYPENHIIVWDSAHSPKQQDGFEVKRKGDKEFTAVI 309

Query: 314 RLTMNYSPEKFMVSTQLSKVLGIEFDTRPRIIAALWHYVKSKKLQSPNDPSFFMCDAPLQ 373
           +L + YSPEKFMVS  LS++LG+E +TRPRIIAALWHYVKS+KLQ  ++PSFF+CD  LQ
Sbjct: 310 KLDLKYSPEKFMVSAPLSRLLGVEVETRPRIIAALWHYVKSRKLQCADEPSFFICDPYLQ 369

Query: 374 RVFGEEKMKFSMASQKISQHLSLPQPIHLEHKLKFSGTCPVGTACYDIQVDVPLPLEKDM 433
           RVFGEEKM F+ A+QK+ +HLS P+PI+LEH +K SG CP GTACYD+QVD+P+P++K+M
Sbjct: 370 RVFGEEKMGFTTAAQKLLEHLSQPKPIYLEHNIKLSGDCPSGTACYDVQVDMPIPMQKEM 429

Query: 434 SAFL--TSIESHKEIDNFDEVICSSIKKIQGHLRRRAFFLGFSQSPAEFINSLITSQSKD 491
           SAFL   SIES+KEI+  DE+I +++KKIQ H RRRAFFL FSQSPAEFIN+ I SQSK 
Sbjct: 430 SAFLASNSIESNKEIETQDEMISANLKKIQEHRRRRAFFLSFSQSPAEFINATIASQSKG 489

Query: 492 LKVVAGDASHSADNERRSEFYNQSWVEDAIIRYLSRKTARSDA 534
            K+VAGDA  +++ E+  EFYNQ WVEDA+IRYL+RK A  DA
Sbjct: 490 PKLVAGDAGRNSEKEQCPEFYNQPWVEDAVIRYLNRKGAGRDA 532


>Medtr6g023835.1 | chromatin remodeling complex subunit | HC |
           chr6:8385402-8388774 | 20130731
          Length = 558

 Score =  540 bits (1392), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/449 (58%), Positives = 340/449 (75%), Gaps = 3/449 (0%)

Query: 91  VGLLHNSGNTHVGTAAPGTASAKRANQKPPSRGPQGSPSANQSSAFKTMELTPAPLRRKR 150
           VG L N G +    + PG+ SAKR   KPP R P G P  N  S  + MELTPA  RRK+
Sbjct: 110 VGGLGNLGVSSSSMSTPGSGSAKRGPLKPPMR-PVGFPPQNNFSPLRPMELTPAAARRKK 168

Query: 151 -SYPEKQIPERVAKLVPECAVYTRLRELEAQIDAALFRKKIDVQEAVRNPTCVQKTMRVY 209
              PEK + ERVA ++PE A+YT+L E E+++DAAL RKK+D+QEA++NP C+QKT+R+Y
Sbjct: 169 QKLPEKPMQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIY 228

Query: 210 VYNTFSNQNKMDSGKNDAEEPSWSLKITGRLLEDGKDPVVAGVSQRESPPCPKFSAFFKK 269
           V+NTF+NQ +    K +AE P+W+LKI GR+LEDG DP   GV Q+ SP  PKFSAFFKK
Sbjct: 229 VFNTFANQIRTIPKKPNAEPPTWTLKIVGRVLEDGVDPDQPGVVQKSSPMYPKFSAFFKK 288

Query: 270 ITIYLDQGFYPDNHVIVWESGRSPNQRDGFEVKRKGDKEFTAVIRLTMNYSPEKFMVSTQ 329
           + I LD   YP+N+ I+W+S RSP  ++GFEVKRKGDKEF+  I+  MNY+PEKF +S  
Sbjct: 289 VIITLDPRLYPENNTIMWDSYRSPAPQEGFEVKRKGDKEFSVNIQFYMNYAPEKFKLSPA 348

Query: 330 LSKVLGIEFDTRPRIIAALWHYVKSKKLQSPNDPSFFMCDAPLQRVFGEEKMKFSMASQK 389
           L++VL I+ DTRPRIIAA+WHYVK++KLQ+P+DPSFF CD PLQ+VFGEEK+KF+  SQK
Sbjct: 349 LTEVLAIDVDTRPRIIAAIWHYVKARKLQNPSDPSFFHCDQPLQKVFGEEKVKFTTVSQK 408

Query: 390 ISQHLSLPQPIHLEHKLKFSGTCPVGTACYDIQVDVPLPLEKDMSAFLTSIESHKEIDNF 449
           IS HL  P PI +EH++K SG  P G+ACYD  +D+P P+++++SA L ++E +KEI+  
Sbjct: 409 ISPHLFPPPPIVVEHQIKLSGNSPAGSACYDAMIDIPFPIQRELSALLANVEKNKEIETC 468

Query: 450 DEVICSSIKKIQGHLRRRAFFLGFSQSPAEFINSLITSQSKDLKVVAGDASHSADNERRS 509
           DE IC  I+KI  H RRRAFFLGFSQSP EFIN+LI SQS+DLK  AG+ S SA+ ERR+
Sbjct: 469 DESICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKAAAGEPSRSAEKERRA 528

Query: 510 EFYNQSWVEDAIIRYLSRK-TARSDAPGN 537
           +F+NQ WVEDA+IRYL+RK  A SDAPG+
Sbjct: 529 DFFNQPWVEDAVIRYLNRKPAAGSDAPGS 557


>Medtr6g023835.2 | chromatin remodeling complex subunit | HC |
           chr6:8385402-8388774 | 20130731
          Length = 558

 Score =  540 bits (1392), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/449 (58%), Positives = 340/449 (75%), Gaps = 3/449 (0%)

Query: 91  VGLLHNSGNTHVGTAAPGTASAKRANQKPPSRGPQGSPSANQSSAFKTMELTPAPLRRKR 150
           VG L N G +    + PG+ SAKR   KPP R P G P  N  S  + MELTPA  RRK+
Sbjct: 110 VGGLGNLGVSSSSMSTPGSGSAKRGPLKPPMR-PVGFPPQNNFSPLRPMELTPAAARRKK 168

Query: 151 -SYPEKQIPERVAKLVPECAVYTRLRELEAQIDAALFRKKIDVQEAVRNPTCVQKTMRVY 209
              PEK + ERVA ++PE A+YT+L E E+++DAAL RKK+D+QEA++NP C+QKT+R+Y
Sbjct: 169 QKLPEKPMQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIY 228

Query: 210 VYNTFSNQNKMDSGKNDAEEPSWSLKITGRLLEDGKDPVVAGVSQRESPPCPKFSAFFKK 269
           V+NTF+NQ +    K +AE P+W+LKI GR+LEDG DP   GV Q+ SP  PKFSAFFKK
Sbjct: 229 VFNTFANQIRTIPKKPNAEPPTWTLKIVGRVLEDGVDPDQPGVVQKSSPMYPKFSAFFKK 288

Query: 270 ITIYLDQGFYPDNHVIVWESGRSPNQRDGFEVKRKGDKEFTAVIRLTMNYSPEKFMVSTQ 329
           + I LD   YP+N+ I+W+S RSP  ++GFEVKRKGDKEF+  I+  MNY+PEKF +S  
Sbjct: 289 VIITLDPRLYPENNTIMWDSYRSPAPQEGFEVKRKGDKEFSVNIQFYMNYAPEKFKLSPA 348

Query: 330 LSKVLGIEFDTRPRIIAALWHYVKSKKLQSPNDPSFFMCDAPLQRVFGEEKMKFSMASQK 389
           L++VL I+ DTRPRIIAA+WHYVK++KLQ+P+DPSFF CD PLQ+VFGEEK+KF+  SQK
Sbjct: 349 LTEVLAIDVDTRPRIIAAIWHYVKARKLQNPSDPSFFHCDQPLQKVFGEEKVKFTTVSQK 408

Query: 390 ISQHLSLPQPIHLEHKLKFSGTCPVGTACYDIQVDVPLPLEKDMSAFLTSIESHKEIDNF 449
           IS HL  P PI +EH++K SG  P G+ACYD  +D+P P+++++SA L ++E +KEI+  
Sbjct: 409 ISPHLFPPPPIVVEHQIKLSGNSPAGSACYDAMIDIPFPIQRELSALLANVEKNKEIETC 468

Query: 450 DEVICSSIKKIQGHLRRRAFFLGFSQSPAEFINSLITSQSKDLKVVAGDASHSADNERRS 509
           DE IC  I+KI  H RRRAFFLGFSQSP EFIN+LI SQS+DLK  AG+ S SA+ ERR+
Sbjct: 469 DESICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKAAAGEPSRSAEKERRA 528

Query: 510 EFYNQSWVEDAIIRYLSRK-TARSDAPGN 537
           +F+NQ WVEDA+IRYL+RK  A SDAPG+
Sbjct: 529 DFFNQPWVEDAVIRYLNRKPAAGSDAPGS 557


>Medtr6g023835.3 | chromatin remodeling complex subunit | HC |
           chr6:8385403-8388774 | 20130731
          Length = 558

 Score =  540 bits (1392), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/449 (58%), Positives = 340/449 (75%), Gaps = 3/449 (0%)

Query: 91  VGLLHNSGNTHVGTAAPGTASAKRANQKPPSRGPQGSPSANQSSAFKTMELTPAPLRRKR 150
           VG L N G +    + PG+ SAKR   KPP R P G P  N  S  + MELTPA  RRK+
Sbjct: 110 VGGLGNLGVSSSSMSTPGSGSAKRGPLKPPMR-PVGFPPQNNFSPLRPMELTPAAARRKK 168

Query: 151 -SYPEKQIPERVAKLVPECAVYTRLRELEAQIDAALFRKKIDVQEAVRNPTCVQKTMRVY 209
              PEK + ERVA ++PE A+YT+L E E+++DAAL RKK+D+QEA++NP C+QKT+R+Y
Sbjct: 169 QKLPEKPMQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIY 228

Query: 210 VYNTFSNQNKMDSGKNDAEEPSWSLKITGRLLEDGKDPVVAGVSQRESPPCPKFSAFFKK 269
           V+NTF+NQ +    K +AE P+W+LKI GR+LEDG DP   GV Q+ SP  PKFSAFFKK
Sbjct: 229 VFNTFANQIRTIPKKPNAEPPTWTLKIVGRVLEDGVDPDQPGVVQKSSPMYPKFSAFFKK 288

Query: 270 ITIYLDQGFYPDNHVIVWESGRSPNQRDGFEVKRKGDKEFTAVIRLTMNYSPEKFMVSTQ 329
           + I LD   YP+N+ I+W+S RSP  ++GFEVKRKGDKEF+  I+  MNY+PEKF +S  
Sbjct: 289 VIITLDPRLYPENNTIMWDSYRSPAPQEGFEVKRKGDKEFSVNIQFYMNYAPEKFKLSPA 348

Query: 330 LSKVLGIEFDTRPRIIAALWHYVKSKKLQSPNDPSFFMCDAPLQRVFGEEKMKFSMASQK 389
           L++VL I+ DTRPRIIAA+WHYVK++KLQ+P+DPSFF CD PLQ+VFGEEK+KF+  SQK
Sbjct: 349 LTEVLAIDVDTRPRIIAAIWHYVKARKLQNPSDPSFFHCDQPLQKVFGEEKVKFTTVSQK 408

Query: 390 ISQHLSLPQPIHLEHKLKFSGTCPVGTACYDIQVDVPLPLEKDMSAFLTSIESHKEIDNF 449
           IS HL  P PI +EH++K SG  P G+ACYD  +D+P P+++++SA L ++E +KEI+  
Sbjct: 409 ISPHLFPPPPIVVEHQIKLSGNSPAGSACYDAMIDIPFPIQRELSALLANVEKNKEIETC 468

Query: 450 DEVICSSIKKIQGHLRRRAFFLGFSQSPAEFINSLITSQSKDLKVVAGDASHSADNERRS 509
           DE IC  I+KI  H RRRAFFLGFSQSP EFIN+LI SQS+DLK  AG+ S SA+ ERR+
Sbjct: 469 DESICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKAAAGEPSRSAEKERRA 528

Query: 510 EFYNQSWVEDAIIRYLSRK-TARSDAPGN 537
           +F+NQ WVEDA+IRYL+RK  A SDAPG+
Sbjct: 529 DFFNQPWVEDAVIRYLNRKPAAGSDAPGS 557